Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002563.1

Orthogroup ID

OG0004883

Physical Location & Seq

Genomic Coordinates Forward (+)

185990 .. 190079

Gene Structure 4090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002563.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgagattgtggttcaaggaagatgggagatgggagatatcttatagaggtgaaaagagaaaaaggaagatggacaaagttggaagtttgaggataaaaaaattcagaggaggtctagatatcaactatggaggtatggatagaaccactcttgtgttagatcaggctgtccaacaattgcacatgccttcctgtccaattcaactggcttttggagatcggtcggtttttgatgtgacggaaggaaagtctcattacagtgatgataatgttgactacgatgtcatattagttaaccggtttgttgatactaaactccaacaactcgagaaaagagcatatgctgcatctctagagtggatttctcaacatggtctacttttaagtggcttgattcagaagattgctgatattgttgttgatagaatgggtggtccggttggagatgcggatgagattttaagaaggtggaaaataaggaggcatgagttgctgagttcaatgaacactatcattcttcccctcagaagaattgatgttggactttcacgccaccggacccttctctttaaggtactagctgataagataaatcttccatgtatgctggtcaaaggtagctactacacggatactgatgatggagttgtaaacttgattaaaattgatagtggaattggaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

EDR1 Pkinase_Tyr

Protein Analysis

228

Amino Acids

26.15

Weight (kDa)

9.39

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004883)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426011 RchiOBHm_Chr5g0048351 RchiOBHm_Chr6g0274051
rosa_multiflora	Rmu_sc0001334.1_g000028 Rmu_sc0002563.1_g000054
rosa_roxburghii	Rroxscaffold_3G00221250 Rroxscaffold_3G00222960 Rroxscaffold_3G00272430
rosa_rugosa	Rorug02G0083800 Rorug02G0160000 Rorug05G0351600
rosa_samantha	Rh1AG405000 Rh2AG259700 Rh3AG030900 Rh3AG031200 Rh3BG031700 Rh3CG030500 Rh3DG031100 Rh3DG031400 Rh4AG058600 Rh4BG057400 Rh4BG113000 Rh5AG212400 Rh5AG317000 Rh5AG447100 Rh5AG447200 Rh5AG542200 Rh5CG299800 Rh6CG198100 Rh6DG189600 Rh7AG437200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	376
AciI	CCGC	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	1 cut(s)	576
AgeI	ACCGGT	1 cut(s)	297
AgsI	TTSAA	3 cut(s)	16, 203, 501
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	2 cut(s)	581, 621
AluI	AGCT	2 cut(s)	581, 621
Alw26I	GTCTC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	101
AsiGI	ACCGGT	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	434, 558
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	434, 558
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	4 cut(s)	17, 24, 64, 635
BciVI	GTATCC	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	3 cut(s)	116, 353, 578
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme18I	GGWCC	2 cut(s)	434, 558
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	434, 558
BmiI	GGNNCC	1 cut(s)	560
BmsI	GCATC	2 cut(s)	356, 436
BsaWI	WCCGGW	3 cut(s)	297, 436, 555
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	457
BseMII	CTCAG	2 cut(s)	485, 538
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	224
BshTI	ACCGGT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	3 cut(s)	298, 437, 556
BsmAI	GTCTC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	160, 217
BspACI	CCGC	1 cut(s)	449
BspCNI	CTCAG	2 cut(s)	486, 537
BspLI	GGNNCC	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	297
BssMI	GATC	2 cut(s)	160, 217
Bst4CI	ACNGT	1 cut(s)	260
BstAPI	GCANNNNNTGC	2 cut(s)	344, 490
BstDEI	CTNAG	2 cut(s)	494, 524
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	2 cut(s)	163, 220
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	160, 217
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 490
BstNSI	RCATGY	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	434, 558
Csp6I	GTAC	1 cut(s)	575
CspAI	ACCGGT	1 cut(s)	297
CviAII	CATG	4 cut(s)	184, 371, 485, 600
CviJI	RGCY	5 cut(s)	167, 209, 390, 581, 621
CviKI_1	RGCY	5 cut(s)	167, 209, 390, 581, 621
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	2 cut(s)	494, 524
DpnI	GATC	2 cut(s)	162, 219
DpnII	GATC	2 cut(s)	160, 217
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eco32I	GATATC	2 cut(s)	39, 121
Eco47I	GGWCC	2 cut(s)	434, 558
Eco88I	CYCGRG	1 cut(s)	326
EcoRV	GATATC	2 cut(s)	39, 121
FaeI	CATG	4 cut(s)	187, 374, 488, 603
FatI	CATG	4 cut(s)	183, 370, 484, 599
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	3 cut(s)	116, 353, 578
GluI	GCNGC	1 cut(s)	345
HapII	CCGG	3 cut(s)	298, 437, 556
Hin1II	CATG	4 cut(s)	187, 374, 488, 603
HincII	GTYRAC	2 cut(s)	274, 295
HindII	GTYRAC	2 cut(s)	274, 295
HinfI	GANTC	1 cut(s)	394
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	3 cut(s)	298, 437, 556
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	4 cut(s)	274, 295, 377, 652
Hpy188I	TCNGA	3 cut(s)	107, 399, 527
Hpy188III	TCNNGA	3 cut(s)	116, 328, 353
Hpy8I	GTNNAC	4 cut(s)	274, 295, 377, 652
HpyAV	CCTTC	4 cut(s)	198, 236, 459, 572
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	181, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 490
HpyF3I	CTNAG	2 cut(s)	494, 524
Hsp92II	CATG	4 cut(s)	187, 374, 488, 603
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	160, 217
LpnPI	CCDG	7 cut(s)	149, 191, 205, 311, 450, 569, 593
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	356, 436
MaeI	CTAG	3 cut(s)	116, 353, 578
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	162, 219
MboI	GATC	2 cut(s)	160, 217
MboII	GAAGA	6 cut(s)	32, 79, 412, 509, 540, 587
MfeI	CAATTG	1 cut(s)	176
MluCI	AATT	6 cut(s)	101, 176, 198, 531, 663, 675
MmeI	TCCRAC	5 cut(s)	61, 196, 343, 421, 520
MnlI	CCTC	7 cut(s)	41, 84, 101, 104, 125, 474, 533
MseI	TTAA	5 cut(s)	294, 383, 461, 570, 660
MslI	CAYNNNNRTG	2 cut(s)	152, 258
MspI	CCGG	3 cut(s)	298, 437, 556
MunI	CAATTG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	344, 490
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	2 cut(s)	160, 217
NlaIII	CATG	4 cut(s)	187, 374, 488, 603
NlaIV	GGNNCC	1 cut(s)	560
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	394
PinAI	ACCGGT	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	2 cut(s)	434, 558
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
RseI	CAYNNNNRTG	2 cut(s)	152, 258
SaqAI	TTAA	5 cut(s)	294, 383, 461, 570, 660
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	160, 217
Sau96I	GGNCC	2 cut(s)	434, 558
SetI	ASST	8 cut(s)	52, 115, 136, 470, 576, 583, 619, 623
SfaNI	GCATC	2 cut(s)	356, 436
Sfr274I	CTCGAG	1 cut(s)	326
SinI	GGWCC	2 cut(s)	434, 558
SlaI	CTCGAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	152, 258
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	6 cut(s)	101, 176, 198, 531, 663, 675
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	3 cut(s)	116, 353, 578
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	327
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	6 cut(s)	101, 176, 198, 531, 663, 675
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	5 cut(s)	294, 383, 461, 570, 660
Tru9I	TTAA	5 cut(s)	294, 383, 461, 570, 660
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	2 cut(s)	254, 644
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	2 cut(s)	434, 558
XapI	RAATTY	1 cut(s)	101
XbaI	TCTAGA	2 cut(s)	115, 352
XceI	RCATGY	1 cut(s)	187
XhoI	CTCGAG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	376
XspI	CTAG	3 cut(s)	116, 353, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.