Rroxscaffold_3G00222960

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004883
Physical Location & Seq
Reverse (-)
6043398 .. 6048028
4631 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00222960.1

Sequence Viewer

Length: 453 bp
ATGTCAAACGAGAATGAGAGAGCAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCAGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGTAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGTGCAGGAGCTTACTGATCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGAGGTATGTTCATATTCTAAACATGAAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.17

Weight (kDa)

5.25

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 114 - 146 2.9e-09 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 194
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 2 cut(s) 342, 400
AgsI TTSAA 4 cut(s) 113, 118, 188, 256
AluBI AGCT 7 cut(s) 94, 127, 217, 280, 347, 387, 413
AluI AGCT 7 cut(s) 94, 127, 217, 280, 347, 387, 413
AoxI GGCC 1 cut(s) 288
ApaI GGGCCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 288, 289
BaeGI GKGCMC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 401
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 288, 289
BmiI GGNNCC 2 cut(s) 289, 290
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 1 cut(s) 267
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 290
BsnI GGCC 1 cut(s) 290
Bsp120I GGGCCC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 223
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 289, 290
BspMAI CTGCAG 1 cut(s) 285
BssMI GATC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 290
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 245
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 288, 289
Csp6I GTAC 2 cut(s) 341, 399
CviAII CATG 2 cut(s) 329, 366
CviQI GTAC 2 cut(s) 341, 399
DdeI CTNAG 1 cut(s) 100
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 292
FaeI CATG 2 cut(s) 332, 369
FaiI YATR 5 cut(s) 313, 319, 330, 367, 371
FatI CATG 2 cut(s) 328, 365
Fnu4HI GCNGC 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 281
HaeIII GGCC 1 cut(s) 290
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 332, 369
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 4 cut(s) 31, 54, 103, 232
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 199, 441
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 211, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 2 cut(s) 332, 369
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 4 cut(s) 132, 214, 264, 410
LpnPI CCDG 7 cut(s) 47, 125, 137, 179, 197, 269, 359
Lsp1109I GCAGC 1 cut(s) 267
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 194
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 4 cut(s) 49, 181, 184, 353
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 7 cut(s) 108, 113, 233, 303, 333, 429, 441
MnlI CCTC 4 cut(s) 145, 255, 301, 331
MseI TTAA 4 cut(s) 177, 197, 302, 426
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 332, 369
NlaIV GGNNCC 2 cut(s) 289, 290
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 282
Psp1406I AACGTT 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 289, 290
PspOMI GGGCCC 1 cut(s) 288
PspPI GGNCC 2 cut(s) 288, 289
PstI CTGCAG 1 cut(s) 285
RsaI GTAC 2 cut(s) 342, 400
RsaNI GTAC 2 cut(s) 341, 399
SaqAI TTAA 4 cut(s) 177, 197, 302, 426
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 288, 289
SduI GDGCHC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 281
Sse9I AATT 7 cut(s) 108, 113, 233, 303, 333, 429, 441
SspMI CTAG 1 cut(s) 344
TaiI ACGT 1 cut(s) 197
TasI AATT 7 cut(s) 108, 113, 233, 303, 333, 429, 441
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 4 cut(s) 177, 197, 302, 426
Tru9I TTAA 4 cut(s) 177, 197, 302, 426
TscAI CASTG 2 cut(s) 150, 252
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 306, 345
TspRI CASTG 2 cut(s) 150, 252
XapI RAATTY 1 cut(s) 233
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.