Rh4BG057400

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004883
Physical Location & Seq
Reverse (-)
10205825 .. 10254398
48574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG057400.1

Sequence Viewer

Length: 690 bp
ATGAGGCTAGCGGTGGCACCGGAGATCAATCTGAGAACTTTATCGGATCCCAAAGCTTGGGCGGGCAACAGGGGTTCATGCAATGTCAAATCCACATATTCTGCCCCCTCCTCTTGGTCTGGATCCTTTATATCAATTGGTACAGCATTTTCTTCCACATTCTCATACAGATTCGGACGCAATGCCACGTCTTTCTCAACTACTTTGGGGCAGAATGAGAGAGCAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCAGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCGGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAACAATGATGAGCTGCAGGGGGCCCATAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGAAAGGTTTCCAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTCGCAAGCCTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.57

Weight (kDa)

5.77

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 168 - 207 4.8e-10 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 57
AciI CCGC 3 cut(s) 11, 62, 344
AclI AACGTT 1 cut(s) 395
AclWI GGATC 4 cut(s) 41, 54, 117, 130
AcsI RAATTY 1 cut(s) 434
AfaI GTAC 3 cut(s) 142, 513, 571
AfiI CCNNNNNNNGG 3 cut(s) 57, 114, 659
AgsI TTSAA 6 cut(s) 314, 319, 362, 389, 457, 617
AjiI CACGTC 1 cut(s) 189
AluBI AGCT 9 cut(s) 56, 295, 328, 418, 481, 518, 558, 584, 641
AluI AGCT 9 cut(s) 56, 295, 328, 418, 481, 518, 558, 584, 641
AlwI GGATC 4 cut(s) 41, 54, 117, 130
AoxI GGCC 1 cut(s) 489
ApaI GGGCCC 1 cut(s) 493
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 1 cut(s) 434
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 2 cut(s) 262, 412
AspS9I GGNCC 2 cut(s) 489, 490
AsuHPI GGTGA 1 cut(s) 358
AsuNHI GCTAGC 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 493
BamHI GGATCC 2 cut(s) 46, 122
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 572
BfaI CTAG 2 cut(s) 8, 515
BfmI CTRYAG 1 cut(s) 482
BglI GCCNNNNNGGC 1 cut(s) 341
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 489, 490
BmiI GGNNCC 5 cut(s) 18, 48, 124, 490, 491
BmsI GCATC 1 cut(s) 619
BmtI GCTAGC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 114, 659
Bse3DI GCAATG 2 cut(s) 88, 187
BseLI CCNNNNNNNGG 3 cut(s) 57, 114, 659
BseMI GCAATG 2 cut(s) 88, 187
BseMII CTCAG 2 cut(s) 23, 315
BseRI GAGGAG 2 cut(s) 100, 478
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 1 cut(s) 468
BshFI GGCC 1 cut(s) 491
BshNI GGYRCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 57, 114, 659
BsnI GGCC 1 cut(s) 491
Bsp120I GGGCCC 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 4 cut(s) 24, 46, 122, 424
BspACI CCGC 3 cut(s) 11, 62, 344
BspANI GGCC 1 cut(s) 491
BspCNI CTCAG 2 cut(s) 24, 314
BspLI GGNNCC 5 cut(s) 18, 48, 124, 490, 491
BspMAI CTGCAG 1 cut(s) 486
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 4 cut(s) 41, 54, 117, 130
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 2 cut(s) 88, 187
BssMI GATC 4 cut(s) 24, 46, 122, 424
BstC8I GCNNGC 4 cut(s) 9, 64, 264, 679
BstDEI CTNAG 2 cut(s) 32, 301
BstHHI GCGC 2 cut(s) 262, 412
BstKTI GATC 4 cut(s) 27, 49, 125, 427
BstMBI GATC 4 cut(s) 24, 46, 122, 424
BstMWI GCNNNNNNNGC 2 cut(s) 341, 638
BstSFI CTRYAG 1 cut(s) 482
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 468
BstX2I RGATCY 2 cut(s) 46, 122
BstYI RGATCY 2 cut(s) 46, 122
BsuRI GGCC 1 cut(s) 491
BtrI CACGTC 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 446
Cac8I GCNNGC 4 cut(s) 9, 64, 264, 679
CfoI GCGC 2 cut(s) 262, 412
Cfr13I GGNCC 2 cut(s) 489, 490
CseI GACGC 1 cut(s) 186
Csp6I GTAC 3 cut(s) 141, 512, 570
CviAII CATG 3 cut(s) 78, 537, 665
CviQI GTAC 3 cut(s) 141, 512, 570
DdeI CTNAG 2 cut(s) 32, 301
DpnI GATC 4 cut(s) 26, 48, 124, 426
DpnII GATC 4 cut(s) 24, 46, 122, 424
Eco24I GRGCYC 1 cut(s) 493
EcoO109I RGGNCCY 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 3 cut(s) 81, 540, 668
FatI CATG 3 cut(s) 77, 536, 664
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 482
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 2 cut(s) 8, 515
GlaI GCGC 2 cut(s) 261, 411
GluI GCNGC 1 cut(s) 482
HaeIII GGCC 1 cut(s) 491
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 186
HhaI GCGC 2 cut(s) 262, 412
Hin1II CATG 3 cut(s) 81, 540, 668
Hin6I GCGC 2 cut(s) 260, 410
HinP1I GCGC 2 cut(s) 260, 410
HindIII AAGCTT 2 cut(s) 54, 293
HinfI GANTC 2 cut(s) 171, 227
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 7 cut(s) 33, 46, 176, 232, 255, 304, 433
Hpy188III TCNNGA 2 cut(s) 120, 626
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 188, 395
HpyCH4V TGCA 2 cut(s) 81, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 638
HpyF3I CTNAG 2 cut(s) 32, 301
HpySE526I ACGT 2 cut(s) 188, 395
Hsp92II CATG 3 cut(s) 81, 540, 668
HspAI GCGC 2 cut(s) 260, 410
Kzo9I GATC 4 cut(s) 24, 46, 122, 424
LmnI GCTCC 5 cut(s) 333, 415, 465, 581, 638
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 1 cut(s) 619
MaeI CTAG 2 cut(s) 8, 515
MaeII ACGT 2 cut(s) 188, 395
MalI GATC 4 cut(s) 26, 48, 124, 426
MboI GATC 4 cut(s) 24, 46, 122, 424
MboII GAAGA 5 cut(s) 144, 250, 382, 385, 524
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 46, 122
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 7 cut(s) 135, 309, 314, 434, 504, 600, 612
MnlI CCTC 5 cut(s) 118, 121, 346, 456, 502
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 4 cut(s) 378, 398, 503, 597
MspI CCGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 341, 638
NdeII GATC 4 cut(s) 24, 46, 122, 424
NheI GCTAGC 1 cut(s) 7
NlaIII CATG 3 cut(s) 81, 540, 668
NlaIV GGNNCC 5 cut(s) 18, 48, 124, 490, 491
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 2 cut(s) 171, 227
PflMI CCANNNNNTGG 1 cut(s) 57
PkrI GCNGC 1 cut(s) 483
Psp1406I AACGTT 1 cut(s) 395
PspN4I GGNNCC 5 cut(s) 18, 48, 124, 490, 491
PspOMI GGGCCC 1 cut(s) 489
PspPI GGNCC 2 cut(s) 489, 490
PstI CTGCAG 1 cut(s) 486
PsuI RGATCY 2 cut(s) 46, 122
RsaI GTAC 3 cut(s) 142, 513, 571
RsaNI GTAC 3 cut(s) 141, 512, 570
SaqAI TTAA 4 cut(s) 378, 398, 503, 597
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 4 cut(s) 24, 46, 122, 424
Sau96I GGNCC 2 cut(s) 489, 490
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 482
Sse9I AATT 7 cut(s) 135, 309, 314, 434, 504, 600, 612
SsiI CCGC 3 cut(s) 11, 62, 344
SspMI CTAG 2 cut(s) 8, 515
TaiI ACGT 2 cut(s) 191, 398
TasI AATT 7 cut(s) 135, 309, 314, 434, 504, 600, 612
TfiI GAWTC 2 cut(s) 171, 227
Tru1I TTAA 4 cut(s) 378, 398, 503, 597
Tru9I TTAA 4 cut(s) 378, 398, 503, 597
TscAI CASTG 1 cut(s) 453
TseI GCWGC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 1 cut(s) 453
Van91I CCANNNNNTGG 1 cut(s) 57
XapI RAATTY 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 2 cut(s) 8, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.