Rh6DG189600

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004883
Physical Location & Seq
Reverse (-)
33857757 .. 33866917
9161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG189600.1

Sequence Viewer

Length: 684 bp
ATGCCGTTGTTGGTGGAATTTCAAGCTGTATCAGTTTCAGATAATGTCGACTATGATGTCATATTAGTTAACAGGTTTGTTGATACTGAACTCCAACAACTCGAGAAAAGAGCATATGCTGCATCTCTAGAGTGGATTTCTCAACATGGTCTACTTTTAAGTGGCTTGATTAAGAAGATTGTTGATATTGTTGTTGATAGAATGGGTCGTCCAGTTGGAGATGCGGATGAGATTTTAAGAAGGTGGAAAATAAGGAGGCATGAGTTGCGAAATTCAATGAACACTATCATTCTTCCCCTTGGAAAAATTGATGTTGGACATTCACGCCACCGGGCCCTTCTCTTTAAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTAATGATGGAGCTGTAAAATTGATAGTGGAATTGGAAGTTGACATAGATATTGATAAGGGAAAAAATGGACATGATTATATCACTATGCCTTCTGGAGAGATCTCAAAGAAAGGTGCAAAGAGATCCAAAATACAAGATAAAGCTGCACATGCAGCTGATGTTTCAGCTAGGCAACACAAGCATAATCCCATGAGAAATTCTGAAGGAAATTTGAGTTCTCCGTCTCATATGCCAGCTGATGCAGAACTATATTACCCCAAAACCTTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

227

Amino Acids

25.43

Weight (kDa)

8.84

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 1 - 151 2.6e-45 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccI GTMKAC 2 cut(s) 48, 151
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 528
AcsI RAATTY 4 cut(s) 17, 271, 607, 619
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 2 cut(s) 351, 409
AgsI TTSAA 2 cut(s) 23, 276
AluBI AGCT 8 cut(s) 26, 356, 396, 422, 554, 566, 578, 647
AluI AGCT 8 cut(s) 26, 356, 396, 422, 554, 566, 578, 647
Alw26I GTCTC 1 cut(s) 639
AlwI GGATC 1 cut(s) 528
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 333
ApaI GGGCCC 1 cut(s) 337
ApeKI GCWGC 3 cut(s) 119, 554, 563
ApoI RAATTY 4 cut(s) 17, 271, 607, 619
AspS9I GGNCC 2 cut(s) 333, 334
AsuC2I CCSGG 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 337
BbvI GCAGC 3 cut(s) 106, 541, 575
BccI CCATC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 639
BfaI CTAG 3 cut(s) 128, 353, 579
BglII AGATCT 1 cut(s) 510
BisI GCNGC 3 cut(s) 120, 555, 564
BlsI GCNGC 3 cut(s) 121, 556, 565
Bme1390I CCNGG 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 333, 334
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 3 cut(s) 131, 211, 640
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 676
BpuMI CCSGG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 3 cut(s) 106, 541, 575
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 639
BsmBI CGTCTC 1 cut(s) 639
BsnI GGCC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 101
Bsp120I GGGCCC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 2 cut(s) 510, 533
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 335
BspPI GGATC 1 cut(s) 528
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 2 cut(s) 510, 533
BssT1I CCWWGG 1 cut(s) 298
BstAPI GCANNNNNTGC 2 cut(s) 119, 265
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 1 cut(s) 676
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 513, 536
BstMAI GTCTC 1 cut(s) 639
BstMBI GATC 2 cut(s) 510, 533
BstMWI GCNNNNNNNGC 5 cut(s) 119, 265, 560, 563, 589
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 3 cut(s) 106, 541, 575
BstX2I RGATCY 2 cut(s) 510, 533
BstYI RGATCY 2 cut(s) 510, 533
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 645
Cfr13I GGNCC 2 cut(s) 333, 334
Csp6I GTAC 2 cut(s) 350, 408
CviAII CATG 6 cut(s) 146, 260, 375, 482, 560, 601
CviQI GTAC 2 cut(s) 350, 408
DdeI CTNAG 1 cut(s) 676
DpnI GATC 2 cut(s) 512, 535
DpnII GATC 2 cut(s) 510, 533
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 639
FaeI CATG 6 cut(s) 149, 263, 378, 485, 563, 604
FatI CATG 6 cut(s) 145, 259, 374, 481, 559, 600
FauNDI CATATG 2 cut(s) 115, 639
FblI GTMKAC 2 cut(s) 48, 151
Fnu4HI GCNGC 3 cut(s) 120, 555, 564
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 3 cut(s) 120, 555, 564
FspBI CTAG 3 cut(s) 128, 353, 579
GluI GCNGC 3 cut(s) 120, 555, 564
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 1 cut(s) 335
HapII CCGG 1 cut(s) 331
Hin1II CATG 6 cut(s) 149, 263, 378, 485, 563, 604
HincII GTYRAC 3 cut(s) 49, 70, 451
HindII GTYRAC 3 cut(s) 49, 70, 451
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 1 cut(s) 331
Hpy166II GTNNAC 4 cut(s) 49, 70, 152, 451
Hpy188I TCNGA 2 cut(s) 40, 613
Hpy188III TCNNGA 3 cut(s) 103, 128, 504
Hpy8I GTNNAC 4 cut(s) 49, 70, 152, 451
HpyAV CCTTC 4 cut(s) 234, 347, 510, 608
HpyCH4V TGCA 5 cut(s) 122, 527, 557, 563, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 265, 560, 563, 589
HpyF3I CTNAG 1 cut(s) 676
Hsp92II CATG 6 cut(s) 149, 263, 378, 485, 563, 604
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 510, 533
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 6 cut(s) 58, 225, 344, 368, 489, 657
Lsp1109I GCAGC 3 cut(s) 106, 541, 575
LweI GCATC 3 cut(s) 131, 211, 640
MaeI CTAG 3 cut(s) 128, 353, 579
MalI GATC 2 cut(s) 512, 535
MboI GATC 2 cut(s) 510, 533
MboII GAAGA 3 cut(s) 187, 284, 362
MflI RGATCY 2 cut(s) 510, 533
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 7 cut(s) 17, 271, 306, 428, 440, 607, 619
MmeI TCCRAC 3 cut(s) 118, 196, 295
MnlI CCTC 1 cut(s) 249
MseI TTAA 5 cut(s) 69, 158, 171, 236, 345
MspA1I CMGCKG 2 cut(s) 566, 647
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 332
MwoI GCNNNNNNNGC 5 cut(s) 119, 265, 560, 563, 589
NciI CCSGG 1 cut(s) 332
NdeI CATATG 2 cut(s) 115, 639
NdeII GATC 2 cut(s) 510, 533
NlaIII CATG 6 cut(s) 149, 263, 378, 485, 563, 604
NlaIV GGNNCC 1 cut(s) 335
NspI RCATGY 1 cut(s) 563
PaeR7I CTCGAG 1 cut(s) 101
PkrI GCNGC 3 cut(s) 121, 556, 565
PspN4I GGNNCC 1 cut(s) 335
PspOMI GGGCCC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 333, 334
PsuI RGATCY 2 cut(s) 510, 533
PvuII CAGCTG 2 cut(s) 566, 647
RsaI GTAC 2 cut(s) 351, 409
RsaNI GTAC 2 cut(s) 350, 408
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 5 cut(s) 69, 158, 171, 236, 345
SatI GCNGC 3 cut(s) 120, 555, 564
Sau3AI GATC 2 cut(s) 510, 533
Sau96I GGNCC 2 cut(s) 333, 334
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 337
SfaNI GCATC 3 cut(s) 131, 211, 640
Sfr274I CTCGAG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 7 cut(s) 17, 271, 306, 428, 440, 607, 619
SsiI CCGC 1 cut(s) 224
SspMI CTAG 3 cut(s) 128, 353, 579
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 298
TaqI TCGA 2 cut(s) 48, 102
TasI AATT 7 cut(s) 17, 271, 306, 428, 440, 607, 619
Tru1I TTAA 5 cut(s) 69, 158, 171, 236, 345
Tru9I TTAA 5 cut(s) 69, 158, 171, 236, 345
TseI GCWGC 3 cut(s) 119, 554, 563
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 621
XapI RAATTY 4 cut(s) 17, 271, 607, 619
XbaI TCTAGA 1 cut(s) 127
XceI RCATGY 1 cut(s) 563
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 2 cut(s) 48, 151
XspI CTAG 3 cut(s) 128, 353, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.