Rh4BG113000

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004883
Physical Location & Seq
Reverse (-)
19135637 .. 19152542
16906 bp
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UTR
Exon/CDS
Intron
Rh4BG113000.1

Sequence Viewer

Length: 366 bp
ATGCAAAACCGGATACTCAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCATAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTCAGAATTTTACAATCCATTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACTGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.87

Weight (kDa)

5.48

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 76 - 117 1.7e-10 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 137
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 2 cut(s) 255, 313
AgsI TTSAA 5 cut(s) 56, 61, 104, 131, 199
AluBI AGCT 7 cut(s) 37, 70, 160, 223, 260, 300, 326
AluI AGCT 7 cut(s) 37, 70, 160, 223, 260, 300, 326
AoxI GGCC 1 cut(s) 231
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 176
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 231, 232
BaeGI GKGCMC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 314
BciVI GTATCC 1 cut(s) 6
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 224
BfuI GTATCC 1 cut(s) 6
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 231, 232
BmiI GGNNCC 2 cut(s) 232, 233
BsaWI WCCGGW 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 10
BsnI GGCC 1 cut(s) 233
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 232, 233
BspMAI CTGCAG 1 cut(s) 228
BsrI ACTGG 1 cut(s) 313
BssMI GATC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 210
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 306
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 231, 232
Csp6I GTAC 2 cut(s) 254, 312
CviAII CATG 1 cut(s) 279
CviQI GTAC 2 cut(s) 254, 312
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 235
FaeI CATG 1 cut(s) 282
FaiI YATR 3 cut(s) 111, 280, 284
FatI CATG 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 224
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 10
HhaI GCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 282
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 35
HpaII CCGG 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 2 cut(s) 46, 175
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 142, 354
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 4, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 1 cut(s) 282
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 4 cut(s) 75, 157, 207, 323
LpnPI CCDG 7 cut(s) 23, 68, 80, 140, 212, 272, 294
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 137
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 2 cut(s) 127, 266
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 6 cut(s) 51, 56, 176, 246, 342, 354
MnlI CCTC 3 cut(s) 88, 198, 244
MseI TTAA 4 cut(s) 120, 140, 245, 339
MspI CCGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 2 cut(s) 232, 233
PkrI GCNGC 1 cut(s) 225
Psp1406I AACGTT 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 232, 233
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 231, 232
PstI CTGCAG 1 cut(s) 228
RsaI GTAC 2 cut(s) 255, 313
RsaNI GTAC 2 cut(s) 254, 312
SaqAI TTAA 4 cut(s) 120, 140, 245, 339
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 2 cut(s) 231, 232
SduI GDGCHC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 6 cut(s) 51, 56, 176, 246, 342, 354
SspMI CTAG 1 cut(s) 257
TaiI ACGT 1 cut(s) 140
TasI AATT 6 cut(s) 51, 56, 176, 246, 342, 354
Tru1I TTAA 4 cut(s) 120, 140, 245, 339
Tru9I TTAA 4 cut(s) 120, 140, 245, 339
TscAI CASTG 2 cut(s) 93, 313
TseI GCWGC 1 cut(s) 223
TspRI CASTG 2 cut(s) 93, 313
XapI RAATTY 1 cut(s) 176
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.