Rh3BG031700

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004883
Physical Location & Seq
Reverse (-)
2098270 .. 2103393
5124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG031700.1

Sequence Viewer

Length: 561 bp
ATGACTTTGGGTCATGTTGGAAGTAGCGCTAAGCTTTGGAGTGAATGCTACTTCTGCAGCGGGGTCATGAAGATTTGCAGCTTTGATCGAGTAGTGGTCATCCTGATGCATATCCCTATTATTGTTCATAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGAGCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGTAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGTGAATATATTATTGATCTGATGGGTGCTTCTGGAACACTAATTCCTGCTAAGATGTGGTTCATGATGTGTCTCAGCATATGGAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.1

Weight (kDa)

5.63

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 110 - 171 4.7e-16 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AclI AACGTT 1 cut(s) 245
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 2 cut(s) 363, 421
AfeI AGCGCT 1 cut(s) 28
AgsI TTSAA 5 cut(s) 164, 169, 212, 239, 307
AhdI GACNNNNNGTC 1 cut(s) 9
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
Alw26I GTCTC 1 cut(s) 545
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 1 cut(s) 339
ApaI GGGCCC 1 cut(s) 343
ApeKI GCWGC 3 cut(s) 57, 78, 331
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 2 cut(s) 29, 262
AspS9I GGNCC 2 cut(s) 339, 340
BaeGI GKGCMC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 343
BbvI GCAGC 3 cut(s) 69, 90, 318
BccI CCATC 2 cut(s) 422, 484
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 2 cut(s) 55, 332
BfoI RGCGCY 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 3 cut(s) 58, 79, 332
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 3 cut(s) 59, 80, 333
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 339, 340
BmiI GGNNCC 2 cut(s) 340, 341
BmsI GCATC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 110
Bse8I GATNNNNATC 1 cut(s) 110
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 110
BseMII CTCAG 3 cut(s) 165, 264, 556
BseRI GAGGAG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 3 cut(s) 69, 90, 318
BshFI GGCC 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 1 cut(s) 341
Bsp120I GGGCCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 85, 484
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 3 cut(s) 164, 265, 555
BspHI TCATGA 2 cut(s) 66, 531
BspLI GGNNCC 2 cut(s) 340, 341
BspMAI CTGCAG 2 cut(s) 59, 336
BssMI GATC 2 cut(s) 85, 484
Bst6I CTCTTC 1 cut(s) 548
BstDEI CTNAG 5 cut(s) 30, 151, 273, 519, 542
BstF5I GGATG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 29, 262
BstKTI GATC 2 cut(s) 88, 487
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 2 cut(s) 85, 484
BstMWI GCNNNNNNNGC 3 cut(s) 54, 191, 274
BstSFI CTRYAG 2 cut(s) 55, 332
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 3 cut(s) 69, 90, 318
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 296
CciI TCATGA 2 cut(s) 66, 531
CfoI GCGC 2 cut(s) 29, 262
Cfr13I GGNCC 2 cut(s) 339, 340
Csp6I GTAC 2 cut(s) 362, 420
CviAII CATG 4 cut(s) 14, 67, 387, 532
CviQI GTAC 2 cut(s) 362, 420
DdeI CTNAG 5 cut(s) 30, 151, 273, 519, 542
DpnI GATC 2 cut(s) 87, 486
DpnII GATC 2 cut(s) 85, 484
DriI GACNNNNNGTC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 548
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 343
Eco47III AGCGCT 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 343
FaeI CATG 4 cut(s) 17, 70, 390, 535
FatI CATG 4 cut(s) 13, 66, 386, 531
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 548
Fnu4HI GCNGC 3 cut(s) 58, 79, 332
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 3 cut(s) 58, 79, 332
FspBI CTAG 1 cut(s) 365
GlaI GCGC 2 cut(s) 28, 261
GluI GCNGC 3 cut(s) 58, 79, 332
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 341
HhaI GCGC 2 cut(s) 29, 262
Hin1II CATG 4 cut(s) 17, 70, 390, 535
Hin6I GCGC 2 cut(s) 27, 260
HinP1I GCGC 2 cut(s) 27, 260
HindIII AAGCTT 2 cut(s) 32, 143
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 154, 283, 489
Hpy188III TCNNGA 4 cut(s) 67, 103, 501, 532
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 57, 78, 109, 334
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 191, 274
HpyF3I CTNAG 5 cut(s) 30, 151, 273, 519, 542
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 4 cut(s) 17, 70, 390, 535
HspAI GCGC 2 cut(s) 27, 260
Kzo9I GATC 2 cut(s) 85, 484
LmnI GCTCC 3 cut(s) 183, 265, 431
LpnPI CCDG 9 cut(s) 116, 176, 188, 230, 248, 320, 380, 486, 528
Lsp1109I GCAGC 3 cut(s) 69, 90, 318
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 245
MalI GATC 2 cut(s) 87, 486
MboI GATC 2 cut(s) 85, 484
MboII GAAGA 4 cut(s) 82, 232, 235, 374
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 7 cut(s) 159, 164, 284, 354, 450, 462, 510
MnlI CCTC 4 cut(s) 196, 306, 352, 549
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 4 cut(s) 228, 248, 353, 447
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 54, 191, 274
NdeI CATATG 1 cut(s) 548
NdeII GATC 2 cut(s) 85, 484
NlaIII CATG 4 cut(s) 17, 70, 390, 535
NlaIV GGNNCC 2 cut(s) 340, 341
NsiI ATGCAT 1 cut(s) 111
PagI TCATGA 2 cut(s) 66, 531
PctI GAATGC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 59, 80, 333
Psp1406I AACGTT 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 340, 341
PspOMI GGGCCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 339, 340
PstI CTGCAG 2 cut(s) 59, 336
RsaI GTAC 2 cut(s) 363, 421
RsaNI GTAC 2 cut(s) 362, 420
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 4 cut(s) 228, 248, 353, 447
SatI GCNGC 3 cut(s) 58, 79, 332
Sau3AI GATC 2 cut(s) 85, 484
Sau96I GGNCC 2 cut(s) 339, 340
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 2 cut(s) 55, 332
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 7 cut(s) 159, 164, 284, 354, 450, 462, 510
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 365
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 88
TasI AATT 7 cut(s) 159, 164, 284, 354, 450, 462, 510
Tru1I TTAA 4 cut(s) 228, 248, 353, 447
Tru9I TTAA 4 cut(s) 228, 248, 353, 447
TscAI CASTG 2 cut(s) 201, 303
TseI GCWGC 3 cut(s) 57, 78, 331
TspDTI ATGAA 3 cut(s) 83, 116, 520
TspRI CASTG 2 cut(s) 201, 303
XapI RAATTY 1 cut(s) 284
XspI CTAG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.