Rh5AG212400

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004883
Physical Location & Seq
Forward (+)
25108172 .. 25112321
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG212400.1

Sequence Viewer

Length: 336 bp
ATGCTGGTCAAAGGAAGCTACTACACAGGTAGTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGTGAATATATTATTGATCTGATGGGTGCTCCTGGAACACTAATTCCTGCTGAGGGTGGCTCAGCCTCTTTGGAAGATCAGTTGTGCTCGCTAGGTGGCTGGTGCAAAAGTCGACTCGTGTCGATCGGTGTTCTAAGAGGAAGAGGAATTAGCAAAATGATGCTAACAAAAGCATTTGATGAATACCTAAAAGAGCAGAAACCGCGAGTTTTGAGGCAGTCTTTGTGCGCAATCATCCCTGATGGGAAAAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

111

Amino Acids

11.81

Weight (kDa)

7.66

Isoelectric Point (pI)

25.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 1 - 41 9.7e-10 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 307
AccI GTMKAC 1 cut(s) 190
AccII CGCG 1 cut(s) 283
AciI CCGC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 131
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 106, 138
AluBI AGCT 2 cut(s) 18, 44
AluI AGCT 2 cut(s) 18, 44
Alw21I GWGCWC 2 cut(s) 109, 167
AspLEI GCGC 1 cut(s) 308
BauI CACGAG 1 cut(s) 194
Bbv12I GWGCWC 2 cut(s) 109, 167
BbvCI CCTCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 32, 94, 314
BciT130I CCWGG 1 cut(s) 111
BfaI CTAG 1 cut(s) 170
BlpI GCTNAGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 228
BoxI GACNNNNGTC 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 122, 154
Bpu10I CCTNAGC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 120, 153
Bsh1236I CGCG 1 cut(s) 283
Bsh1285I CGRYCG 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 2 cut(s) 109, 167
BslI CCNNNNNNNGG 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 109, 167
Bsp143I GATC 3 cut(s) 94, 154, 201
Bsp1720I GCTNAGC 1 cut(s) 139
BspACI CCGC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 121, 152
BspFNI CGCG 1 cut(s) 283
BssMI GATC 3 cut(s) 94, 154, 201
BssSI CACGAG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 129, 139, 212
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 3 cut(s) 97, 157, 204
BstMBI GATC 3 cut(s) 94, 154, 201
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 111
BstPAI GACNNNNGTC 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 167
CfoI GCGC 1 cut(s) 308
CviJI RGCY 5 cut(s) 18, 44, 138, 143, 177
CviKI_1 RGCY 5 cut(s) 18, 44, 138, 143, 177
DdeI CTNAG 3 cut(s) 129, 139, 212
DpnI GATC 3 cut(s) 96, 156, 203
DpnII GATC 3 cut(s) 94, 154, 201
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 109
FaiI YATR 1 cut(s) 87
FblI GTMKAC 1 cut(s) 190
FokI GGATG 1 cut(s) 299
FspBI CTAG 1 cut(s) 170
FspI TGCGCA 1 cut(s) 307
GlaI GCGC 1 cut(s) 307
HhaI GCGC 1 cut(s) 308
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HinfI GANTC 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 49, 191
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 2 cut(s) 49, 191
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 3 cut(s) 129, 139, 212
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 3 cut(s) 94, 154, 201
LmnI GCTCC 2 cut(s) 41, 112
LpnPI CCDG 6 cut(s) 12, 96, 123, 138, 163, 330
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 170
MalI GATC 3 cut(s) 96, 156, 203
MboI GATC 3 cut(s) 94, 154, 201
MboII GAAGA 2 cut(s) 164, 231
MhlI GDGCHC 2 cut(s) 109, 167
MluCI AATT 4 cut(s) 60, 72, 120, 225
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 5 cut(s) 124, 154, 209, 215, 285
MseI TTAA 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 3 cut(s) 94, 154, 201
NsbI TGCGCA 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 109
Ple19I CGATCG 1 cut(s) 204
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PshAI GACNNNNGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PvuI CGATCG 1 cut(s) 204
SalI GTCGAC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 3 cut(s) 94, 154, 201
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 2 cut(s) 109, 167
SetI ASST 5 cut(s) 20, 31, 46, 175, 267
SfaNI GCATC 1 cut(s) 228
Sse9I AATT 4 cut(s) 60, 72, 120, 225
SsiI CCGC 1 cut(s) 281
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 190, 200
TasI AATT 4 cut(s) 60, 72, 120, 225
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 190
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.