Rh3DG031100

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004883
Physical Location & Seq
Reverse (-)
2069501 .. 2073912
4412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG031100.1

Sequence Viewer

Length: 474 bp
ATGACTTTGGGTCATGTTGGAAGTAGCGCTAAGCTTTGGAGTGAATGCTACTTCTGCAGCGGGGTCATGAAGATTTGCAGCTTTGATCGAGTAGTGGTCATCCTGATGCATATCCCTATTATTGTTCATAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGAGCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGTAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.78

Weight (kDa)

5.61

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 108 - 153 2.2e-10 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AclI AACGTT 1 cut(s) 245
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 2 cut(s) 363, 421
AfeI AGCGCT 1 cut(s) 28
AgsI TTSAA 5 cut(s) 164, 169, 212, 239, 307
AhdI GACNNNNNGTC 1 cut(s) 9
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 1 cut(s) 339
ApaI GGGCCC 1 cut(s) 343
ApeKI GCWGC 3 cut(s) 57, 78, 331
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 2 cut(s) 29, 262
AspS9I GGNCC 2 cut(s) 339, 340
BaeGI GKGCMC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 343
BbvI GCAGC 3 cut(s) 69, 90, 318
BccI CCATC 1 cut(s) 422
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 2 cut(s) 55, 332
BfoI RGCGCY 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 3 cut(s) 58, 79, 332
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 3 cut(s) 59, 80, 333
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 339, 340
BmiI GGNNCC 2 cut(s) 340, 341
BmsI GCATC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 110
Bse8I GATNNNNATC 1 cut(s) 110
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 110
BseMII CTCAG 2 cut(s) 165, 264
BseRI GAGGAG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 3 cut(s) 69, 90, 318
BshFI GGCC 1 cut(s) 341
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 1 cut(s) 341
Bsp120I GGGCCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 85
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 2 cut(s) 164, 265
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 340, 341
BspMAI CTGCAG 2 cut(s) 59, 336
BssMI GATC 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 30, 151, 273
BstF5I GGATG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 29, 262
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 54, 191, 274
BstSFI CTRYAG 2 cut(s) 55, 332
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 3 cut(s) 69, 90, 318
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 296
CciI TCATGA 1 cut(s) 66
CfoI GCGC 2 cut(s) 29, 262
Cfr13I GGNCC 2 cut(s) 339, 340
Csp6I GTAC 2 cut(s) 362, 420
CviAII CATG 3 cut(s) 14, 67, 387
CviQI GTAC 2 cut(s) 362, 420
DdeI CTNAG 3 cut(s) 30, 151, 273
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DriI GACNNNNNGTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 343
Eco47III AGCGCT 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 343
FaeI CATG 3 cut(s) 17, 70, 390
FaiI YATR 6 cut(s) 15, 68, 111, 129, 388, 392
FatI CATG 3 cut(s) 13, 66, 386
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 3 cut(s) 58, 79, 332
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 3 cut(s) 58, 79, 332
FspBI CTAG 1 cut(s) 365
GlaI GCGC 2 cut(s) 28, 261
GluI GCNGC 3 cut(s) 58, 79, 332
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 341
HhaI GCGC 2 cut(s) 29, 262
Hin1II CATG 3 cut(s) 17, 70, 390
Hin6I GCGC 2 cut(s) 27, 260
HinP1I GCGC 2 cut(s) 27, 260
HindIII AAGCTT 2 cut(s) 32, 143
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 2 cut(s) 154, 283
Hpy188III TCNNGA 2 cut(s) 67, 103
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 250, 462
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 57, 78, 109, 334
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 191, 274
HpyF3I CTNAG 3 cut(s) 30, 151, 273
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 3 cut(s) 17, 70, 390
HspAI GCGC 2 cut(s) 27, 260
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 3 cut(s) 183, 265, 431
LpnPI CCDG 7 cut(s) 116, 176, 188, 230, 248, 320, 380
Lsp1109I GCAGC 3 cut(s) 69, 90, 318
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 245
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 4 cut(s) 82, 232, 235, 374
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 6 cut(s) 159, 164, 284, 354, 450, 462
MnlI CCTC 3 cut(s) 196, 306, 352
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 4 cut(s) 228, 248, 353, 447
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 54, 191, 274
NdeII GATC 1 cut(s) 85
NlaIII CATG 3 cut(s) 17, 70, 390
NlaIV GGNNCC 2 cut(s) 340, 341
NsiI ATGCAT 1 cut(s) 111
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 59, 80, 333
Psp1406I AACGTT 1 cut(s) 245
PspN4I GGNNCC 2 cut(s) 340, 341
PspOMI GGGCCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 339, 340
PstI CTGCAG 2 cut(s) 59, 336
RsaI GTAC 2 cut(s) 363, 421
RsaNI GTAC 2 cut(s) 362, 420
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 4 cut(s) 228, 248, 353, 447
SatI GCNGC 3 cut(s) 58, 79, 332
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 339, 340
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 2 cut(s) 55, 332
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 6 cut(s) 159, 164, 284, 354, 450, 462
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 365
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 88
TasI AATT 6 cut(s) 159, 164, 284, 354, 450, 462
Tru1I TTAA 4 cut(s) 228, 248, 353, 447
Tru9I TTAA 4 cut(s) 228, 248, 353, 447
TscAI CASTG 2 cut(s) 201, 303
TseI GCWGC 3 cut(s) 57, 78, 331
TspDTI ATGAA 2 cut(s) 83, 116
TspRI CASTG 2 cut(s) 201, 303
XapI RAATTY 1 cut(s) 284
XspI CTAG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.