Rh5CG299800

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004883
Physical Location & Seq
Reverse (-)
33021119 .. 33031578
10460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG299800.1

Sequence Viewer

Length: 537 bp
ATGAGAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCAGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGCGCAGGAGCTTACTGATCTGTCAGAATTTTACAATCCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGACCCGAAAAGAGTTAATTGAGGTACTAGCTGATAAGATAAATCTTCCATGTATGTTGGTCAAAGGTAGCTACTACACGGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATCGGAAGTGAATATATTATTAATCTGATGGGTGCTTCTGGAACACTAATTCCTGCTAAGGCCATAGCCCGTCTTATCATCACTACTAGATGCCTAGCTAGCGAACAAATTCCAGGCCCCGAGAAGTGGGAATCAACTGGTGTATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.98

Weight (kDa)

5.44

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 87 - 146 9.8e-15 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 170
AcsI RAATTY 2 cut(s) 209, 495
AfaI GTAC 2 cut(s) 288, 346
AfiI CCNNNNNNNGG 1 cut(s) 513
AgsI TTSAA 5 cut(s) 89, 94, 137, 164, 232
AjnI CCWGG 1 cut(s) 499
AloI GAACNNNNNNTCC 2 cut(s) 421, 453
AluBI AGCT 8 cut(s) 70, 103, 193, 256, 293, 333, 359, 485
AluI AGCT 8 cut(s) 70, 103, 193, 256, 293, 333, 359, 485
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 2 cut(s) 447, 502
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 2 cut(s) 209, 495
AseI ATTAAT 1 cut(s) 408
Asp700I GAANNNNTTC 1 cut(s) 495
AspLEI GCGC 2 cut(s) 37, 187
AspS9I GGNCC 2 cut(s) 264, 503
AsuNHI GCTAGC 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 1 cut(s) 264
BaeI ACNNNNGTAYC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 243
BccI CCATC 2 cut(s) 347, 409
BciT130I CCWGG 1 cut(s) 501
BfaI CTAG 4 cut(s) 290, 474, 482, 486
BfmI CTRYAG 1 cut(s) 257
BglI GCCNNNNNGGC 1 cut(s) 116
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 264, 503
BmiI GGNNCC 3 cut(s) 265, 266, 505
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 467
BmtI GCTAGC 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 1 cut(s) 529
BseBI CCWGG 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 243
BshFI GGCC 2 cut(s) 449, 504
BsiHKCI CYCGRG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 2 cut(s) 449, 504
BsoBI CYCGRG 1 cut(s) 506
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 2 cut(s) 449, 504
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 3 cut(s) 265, 266, 505
BspMAI CTGCAG 1 cut(s) 261
BspOI GCTAGC 1 cut(s) 489
BsrI ACTGG 1 cut(s) 529
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 39, 487
BstDEI CTNAG 2 cut(s) 76, 444
BstHHI GCGC 2 cut(s) 37, 187
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 116, 486
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 243
BsuRI GGCC 2 cut(s) 449, 504
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 221
Cac8I GCNNGC 2 cut(s) 39, 487
CfoI GCGC 2 cut(s) 37, 187
Cfr13I GGNCC 2 cut(s) 264, 503
Csp6I GTAC 2 cut(s) 287, 345
CviAII CATG 1 cut(s) 312
CviQI GTAC 2 cut(s) 287, 345
DdeI CTNAG 2 cut(s) 76, 444
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 506
EcoO109I RGGNCCY 2 cut(s) 264, 503
EcoRII CCWGG 1 cut(s) 499
FaeI CATG 1 cut(s) 315
FaiI YATR 4 cut(s) 313, 317, 402, 452
FaqI GGGAC 1 cut(s) 277
FatI CATG 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 4 cut(s) 290, 474, 482, 486
GlaI GCGC 2 cut(s) 36, 186
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 2 cut(s) 449, 504
HhaI GCGC 2 cut(s) 37, 187
Hin1II CATG 1 cut(s) 315
Hin6I GCGC 2 cut(s) 35, 185
HinP1I GCGC 2 cut(s) 35, 185
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 387, 518
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 5 cut(s) 30, 79, 208, 392, 414
Hpy188III TCNNGA 1 cut(s) 426
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 486
HpyF3I CTNAG 2 cut(s) 76, 444
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 1 cut(s) 315
HspAI GCGC 2 cut(s) 35, 185
KflI GGGWCCC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 4 cut(s) 108, 190, 240, 356
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 467
MaeI CTAG 4 cut(s) 290, 474, 482, 486
MaeII ACGT 1 cut(s) 170
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 4 cut(s) 25, 157, 160, 299
MluCI AATT 7 cut(s) 84, 89, 209, 279, 375, 435, 495
MnlI CCTC 3 cut(s) 121, 231, 277
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 5 cut(s) 153, 173, 278, 372, 408
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 116, 486
NdeII GATC 1 cut(s) 199
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 1 cut(s) 315
NlaIV GGNNCC 3 cut(s) 265, 266, 505
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 387, 518
PkrI GCNGC 1 cut(s) 258
PpuMI RGGWCCY 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 170
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 3 cut(s) 265, 266, 505
PspPI GGNCC 2 cut(s) 264, 503
PspPPI RGGWCCY 1 cut(s) 264
PstI CTGCAG 1 cut(s) 261
RsaI GTAC 2 cut(s) 288, 346
RsaNI GTAC 2 cut(s) 287, 345
SaqAI TTAA 5 cut(s) 153, 173, 278, 372, 408
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 2 cut(s) 264, 503
ScrFI CCNGG 1 cut(s) 501
SfaNI GCATC 1 cut(s) 467
SfcI CTRYAG 1 cut(s) 257
SinI GGWCC 1 cut(s) 264
Sse9I AATT 7 cut(s) 84, 89, 209, 279, 375, 435, 495
SspMI CTAG 4 cut(s) 290, 474, 482, 486
StyD4I CCNGG 1 cut(s) 499
TaiI ACGT 1 cut(s) 173
TasI AATT 7 cut(s) 84, 89, 209, 279, 375, 435, 495
TfiI GAWTC 2 cut(s) 387, 518
Tru1I TTAA 5 cut(s) 153, 173, 278, 372, 408
Tru9I TTAA 5 cut(s) 153, 173, 278, 372, 408
TscAI CASTG 2 cut(s) 126, 228
TseI GCWGC 1 cut(s) 256
TspRI CASTG 2 cut(s) 126, 228
VpaK11BI GGWCC 1 cut(s) 264
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 2 cut(s) 209, 495
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 4 cut(s) 290, 474, 482, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.