Rh5AG317000

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004883
Physical Location & Seq
Reverse (-)
46576702 .. 46577840
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG317000.1

Sequence Viewer

Length: 273 bp
ATGAACACTATCATTCTTCCCCTCAGAAGAATTGATGTTGGACTTTCACGCCACCGGGCCCTTCTCTTTAAGGTACTAGCTGATAAGATAAATCTTCCATGTATTCTGGTCAAAGGTAGCTACTACACGGATACTGATGATGGAGTTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGTGAATATATTATTGATCTGATGGGTGCTCCTGGAACACTAATTCCTGCTGAGATGTGGTTCATGATGTGTCTCAGCATATGGAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

90

Amino Acids

10.13

Weight (kDa)

7.78

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 2 - 75 2e-29 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 75
AjnI CCWGG 1 cut(s) 211
AloI GAACNNNNNNTCC 2 cut(s) 208, 240
AluBI AGCT 2 cut(s) 80, 120
AluI AGCT 2 cut(s) 80, 120
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 257
AoxI GGCC 1 cut(s) 57
ApaI GGGCCC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 57, 58
AsuC2I CCSGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 211
BccI CCATC 2 cut(s) 134, 196
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 124
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 77
BfuI GTATCC 1 cut(s) 124
Bme1390I CCNGG 2 cut(s) 56, 213
BmgT120I GGNCC 2 cut(s) 57, 58
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 56, 213
BpuMI CCSGG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 37, 222, 268
BseSI GKGCMC 1 cut(s) 61
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 59
Bsp120I GGGCCC 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 61, 211
Bsp143I GATC 1 cut(s) 196
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 3 cut(s) 36, 223, 267
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 59
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 260
BstDEI CTNAG 3 cut(s) 23, 231, 254
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 54, 211
BstSLI GKGCMC 1 cut(s) 61
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 59
CciI TCATGA 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 57, 58
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 99, 244
CviJI RGCY 3 cut(s) 59, 80, 120
CviKI_1 RGCY 3 cut(s) 59, 80, 120
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 3 cut(s) 23, 231, 254
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 2 cut(s) 102, 247
FaiI YATR 5 cut(s) 100, 189, 245, 260, 262
FatI CATG 2 cut(s) 98, 243
FauNDI CATATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 61
FspBI CTAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 55
Hin1II CATG 2 cut(s) 102, 247
HpaII CCGG 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 26, 201
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 71
HpyF3I CTNAG 3 cut(s) 23, 231, 254
Hsp92II CATG 2 cut(s) 102, 247
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 68, 92, 198, 225, 240
MaeI CTAG 1 cut(s) 77
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 8, 39, 86
MhlI GDGCHC 2 cut(s) 61, 211
MluCI AATT 4 cut(s) 30, 162, 174, 222
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 2 cut(s) 32, 261
MseI TTAA 2 cut(s) 69, 159
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 2 cut(s) 56, 213
MvaI CCWGG 1 cut(s) 213
NciI CCSGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 260
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 102, 247
NlaIV GGNNCC 1 cut(s) 59
PagI TCATGA 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 59
PspOMI GGGCCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 57, 58
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 69, 159
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 57, 58
ScrFI CCNGG 2 cut(s) 56, 213
SduI GDGCHC 2 cut(s) 61, 211
SetI ASST 5 cut(s) 75, 82, 118, 122, 272
Sse9I AATT 4 cut(s) 30, 162, 174, 222
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 54, 211
TasI AATT 4 cut(s) 30, 162, 174, 222
Tru1I TTAA 2 cut(s) 69, 159
Tru9I TTAA 2 cut(s) 69, 159
TspDTI ATGAA 2 cut(s) 17, 232
TspGWI ACGGA 1 cut(s) 143
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.