Rh6CG198100

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004883
Physical Location & Seq
Reverse (-)
33055325 .. 33055600
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG198100.1

Sequence Viewer

Length: 276 bp
ATGCCGTTGTTGGTGGAATTTCAAGCTGTATCAGTTTCAGATAATGTCGACTACGATGTCATATTAGTTAACAGGTTTGTTGATACTGAACTCCAACAACTCGAGAAAAGAGCATATGCTGCATCTCTAGAGTGGATTTCTCAACATGGTCTACTTTTAAGTGGCTTGATTCAGAAGATTGCTGATATTGTTGTTGATAGAATGGGTCGTCCAGTTGGAGATGCGGATGAGATTTTAAGAAGGTGGAAAATAAGGAGGCATGAGTTGCGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

91

Amino Acids

10.52

Weight (kDa)

5.6

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 1 - 90 8.9e-18 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccI GTMKAC 2 cut(s) 48, 151
AciI CCGC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 17
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 101
BbvI GCAGC 1 cut(s) 106
BfaI CTAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 101
BmsI GCATC 2 cut(s) 131, 211
Bse1I ACTGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 101
BspACI CCGC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 212
BstAPI GCANNNNNTGC 2 cut(s) 119, 265
BstF5I GGATG 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 119, 265
BstV1I GCAGC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 232
CviAII CATG 2 cut(s) 146, 260
CviJI RGCY 2 cut(s) 26, 165
CviKI_1 RGCY 2 cut(s) 26, 165
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 101
FaeI CATG 2 cut(s) 149, 263
FaiI YATR 5 cut(s) 62, 115, 117, 147, 261
FatI CATG 2 cut(s) 145, 259
FauNDI CATATG 1 cut(s) 115
FblI GTMKAC 2 cut(s) 48, 151
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 149, 263
HincII GTYRAC 2 cut(s) 49, 70
HindII GTYRAC 2 cut(s) 49, 70
HinfI GANTC 1 cut(s) 169
HpaI GTTAAC 1 cut(s) 70
Hpy166II GTNNAC 3 cut(s) 49, 70, 152
Hpy188I TCNGA 2 cut(s) 40, 174
Hpy188III TCNNGA 2 cut(s) 103, 128
Hpy8I GTNNAC 3 cut(s) 49, 70, 152
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 265
Hsp92II CATG 2 cut(s) 149, 263
KspAI GTTAAC 1 cut(s) 70
LpnPI CCDG 2 cut(s) 58, 225
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 131, 211
MaeI CTAG 1 cut(s) 128
MboII GAAGA 1 cut(s) 187
MluCI AATT 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 118, 196
MnlI CCTC 1 cut(s) 249
MseI TTAA 3 cut(s) 69, 158, 236
MwoI GCNNNNNNNGC 2 cut(s) 119, 265
NdeI CATATG 1 cut(s) 115
NlaIII CATG 2 cut(s) 149, 263
PaeR7I CTCGAG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 121
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 3 cut(s) 69, 158, 236
SatI GCNGC 1 cut(s) 120
SetI ASST 3 cut(s) 28, 77, 245
SfaNI GCATC 2 cut(s) 131, 211
Sfr274I CTCGAG 1 cut(s) 101
SgeI CNNG 9 cut(s) 35, 85, 113, 115, 140, 158, 178, 224, 272
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 128
TaqI TCGA 2 cut(s) 48, 102
TasI AATT 1 cut(s) 17
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 69, 158, 236
Tru9I TTAA 3 cut(s) 69, 158, 236
TseI GCWGC 1 cut(s) 119
XapI RAATTY 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 2 cut(s) 48, 151
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.