Rorug02G0160000

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004883
Physical Location & Seq
Forward (+)
14258665 .. 14259733
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0160000.1

Sequence Viewer

Length: 891 bp
ATGAAAAAAAGTGATTTTACAGAACTATTCAAGAAATTAAAGTACCGTGATCAGCTGGATCTCCTTTCCGAAGTTTTGCAGAAACTCAAGTATGAAAGGCTAATACCTTCATTCAAGCAACTAGACGCGAAGCATCAGCAACAAGTGATTCAACAACTGGCTCGTGTTACCCCATCCTCATCCCGCTTGTGGAGTCTAGATAGGGACAGCAAGGCCGAGAATCTTCGCCGGGGCCCCGAGGAAACTAAAGAGGATTTCAGACTCAGAAGATTTACACAGCTGTGTACAGATCGTGCCCGGGATGCTCACAAGCTTATTGTTTCCTGGAAAAGTGAAGATGATGATGAACAGGAGAACACATCTGATGATGATAACGAAAACAATTCGGATTGGAAGTCGCGTTTTTCTGAATTTTTCTTAGGTTTCTCAATTATTTGGTTCCAGGGACAATGGGCCAGTGGTCAAGACATGCTGATTGAACAACTCTCCAAGGAATTTACAGGTGTTGTGATCGAGAAAAGTCTGCAGAACGAATCTGAGGAGGATTTCAAACTCAGAACATTCAAAGAGTTATGCACCAAAGTAATTGACTTTCGGGTCCAAGAGCAATTCCTTGACAATGCTGTAGGGAAACTAGAAAGACGGAGATTCACAGAGTCGTTCACTTCCAAAGAAAGTGTCGTCCGCTACATTCATGAAACATTATTTGATGAGCCTCACAGCATCAAACCACCGGCTGAAGGAAGGGGTTCGTTTGATTCTGAATGGATCAAGATGAAACTTCCAAATCTACAAGGTCAGGGAGCAACAGCAACTACTCCTCAAGGAGCACCAGTGGGTGGATCAGCAACTACGACTCAAGCAGGAGGAGGAATAGTCAACCGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

296

Amino Acids

34.31

Weight (kDa)

5.97

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 596
AccB7I CCANNNNNTGG 1 cut(s) 839
AccII CGCG 2 cut(s) 128, 400
AciI CCGC 2 cut(s) 184, 685
AclWI GGATC 3 cut(s) 66, 776, 850
AcsI RAATTY 2 cut(s) 410, 494
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 2 cut(s) 44, 286
AfiI CCNNNNNNNGG 3 cut(s) 189, 740, 839
AgsI TTSAA 6 cut(s) 31, 115, 152, 479, 550, 565
AjnI CCWGG 2 cut(s) 323, 441
AleI CACNNNNGTG 1 cut(s) 280
AluBI AGCT 3 cut(s) 55, 280, 313
AluI AGCT 3 cut(s) 55, 280, 313
Alw21I GWGCWC 1 cut(s) 832
AlwI GGATC 3 cut(s) 66, 776, 850
Ama87I CYCGRG 2 cut(s) 236, 297
AoxI GGCC 3 cut(s) 213, 232, 453
ApaI GGGCCC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 410, 494
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
Asp700I GAANNNNTTC 1 cut(s) 748
AspS9I GGNCC 4 cut(s) 232, 233, 453, 598
AsuC2I CCSGG 3 cut(s) 230, 298, 299
AvaI CYCGRG 2 cut(s) 236, 297
AvaII GGWCC 1 cut(s) 598
BaeGI GKGCMC 2 cut(s) 236, 298
BanII GRGCYC 1 cut(s) 236
BauI CACGAG 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 832
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 325, 443
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 3 cut(s) 230, 298, 299
BfaI CTAG 3 cut(s) 122, 197, 635
BfmI CTRYAG 2 cut(s) 524, 624
Bme1390I CCNGG 5 cut(s) 230, 298, 299, 325, 443
Bme18I GGWCC 1 cut(s) 598
BmeT110I CYCGRG 2 cut(s) 236, 297
BmgT120I GGNCC 4 cut(s) 232, 233, 453, 598
BmiI GGNNCC 5 cut(s) 233, 234, 235, 440, 599
BmrFI CCNGG 5 cut(s) 230, 298, 299, 325, 443
BmsI GCATC 3 cut(s) 142, 292, 732
BpuEI CTTGAG 3 cut(s) 71, 807, 843
BpuMI CCSGG 3 cut(s) 230, 298, 299
BsaJI CCNNGG 5 cut(s) 229, 237, 297, 442, 489
BsaWI WCCGGW 1 cut(s) 882
BsaXI ACNNNNNCTCC 4 cut(s) 819, 849, 861, 891
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 740, 839
Bse118I RCCGGY 1 cut(s) 733
Bse1I ACTGG 3 cut(s) 162, 456, 833
BseBI CCWGG 2 cut(s) 325, 443
BseDI CCNNGG 5 cut(s) 229, 237, 297, 442, 489
BseGI GGATG 3 cut(s) 173, 179, 307
BseLI CCNNNNNNNGG 3 cut(s) 189, 740, 839
BseMII CTCAG 3 cut(s) 277, 528, 568
BseNI ACTGG 3 cut(s) 162, 456, 833
BseRI GAGGAG 3 cut(s) 554, 810, 882
BseSI GKGCMC 2 cut(s) 236, 298
Bsh1236I CGCG 2 cut(s) 128, 400
BshFI GGCC 3 cut(s) 215, 234, 455
BsiHKAI GWGCWC 1 cut(s) 832
BsiHKCI CYCGRG 2 cut(s) 236, 297
BsiSI CCGG 4 cut(s) 229, 298, 734, 883
BslFI GGGAC 2 cut(s) 218, 459
BslI CCNNNNNNNGG 3 cut(s) 189, 740, 839
BsmFI GGGAC 2 cut(s) 218, 459
BsnI GGCC 3 cut(s) 215, 234, 455
BsoBI CYCGRG 2 cut(s) 236, 297
Bsp120I GGGCCC 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 236, 298, 832
Bsp1407I TGTACA 1 cut(s) 284
Bsp143I GATC 6 cut(s) 49, 58, 289, 510, 768, 842
BspACI CCGC 2 cut(s) 184, 685
BspANI GGCC 3 cut(s) 215, 234, 455
BspCNI CTCAG 3 cut(s) 276, 529, 567
BspFNI CGCG 2 cut(s) 128, 400
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 5 cut(s) 233, 234, 235, 440, 599
BspMAI CTGCAG 1 cut(s) 528
BspPI GGATC 3 cut(s) 66, 776, 850
BsrFI RCCGGY 1 cut(s) 733
BsrGI TGTACA 1 cut(s) 284
BsrI ACTGG 3 cut(s) 162, 456, 833
BssAI RCCGGY 1 cut(s) 733
BssECI CCNNGG 5 cut(s) 229, 237, 297, 442, 489
BssMI GATC 6 cut(s) 49, 58, 289, 510, 768, 842
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 325, 443
Bst4CI ACNGT 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 284
BstDEI CTNAG 4 cut(s) 263, 418, 537, 554
BstF5I GGATG 3 cut(s) 173, 179, 307
BstFNI CGCG 2 cut(s) 128, 400
BstKTI GATC 6 cut(s) 52, 61, 292, 513, 771, 845
BstMBI GATC 6 cut(s) 49, 58, 289, 510, 768, 842
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 2 cut(s) 325, 443
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 5 cut(s) 228, 296, 297, 323, 441
BstSFI CTRYAG 2 cut(s) 524, 624
BstSLI GKGCMC 2 cut(s) 236, 298
BstUI CGCG 2 cut(s) 128, 400
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 3 cut(s) 215, 234, 455
BtsCI GGATG 3 cut(s) 173, 179, 307
BtsIMutI CAGTG 2 cut(s) 463, 840
CciI TCATGA 1 cut(s) 694
Cfr10I RCCGGY 1 cut(s) 733
Cfr13I GGNCC 4 cut(s) 232, 233, 453, 598
Cfr9I CCCGGG 1 cut(s) 297
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 43, 285
CviAII CATG 2 cut(s) 469, 695
CviQI GTAC 2 cut(s) 43, 285
DdeI CTNAG 4 cut(s) 263, 418, 537, 554
DpnI GATC 6 cut(s) 51, 60, 291, 512, 770, 844
DpnII GATC 6 cut(s) 49, 58, 289, 510, 768, 842
DrdI GACNNNNNNGTC 1 cut(s) 596
DseDI GACNNNNNNGTC 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 759
Eco88I CYCGRG 2 cut(s) 236, 297
EcoO109I RGGNCCY 2 cut(s) 232, 233
EcoRII CCWGG 2 cut(s) 323, 441
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 2 cut(s) 472, 698
FaiI YATR 4 cut(s) 93, 470, 574, 696
FaqI GGGAC 2 cut(s) 218, 459
FatI CATG 2 cut(s) 468, 694
FauI CCCGC 1 cut(s) 191
FbaI TGATCA 1 cut(s) 49
FokI GGATG 3 cut(s) 160, 166, 314
FriOI GRGCYC 1 cut(s) 236
FspBI CTAG 3 cut(s) 122, 197, 635
HaeIII GGCC 3 cut(s) 215, 234, 455
HapII CCGG 4 cut(s) 229, 298, 734, 883
HgaI GACGC 1 cut(s) 134
Hin1II CATG 2 cut(s) 472, 698
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 9 cut(s) 148, 193, 220, 261, 533, 648, 656, 758, 856
HpaII CCGG 4 cut(s) 229, 298, 734, 883
Hpy166II GTNNAC 3 cut(s) 285, 663, 880
Hpy188I TCNGA 9 cut(s) 70, 260, 266, 364, 388, 409, 538, 557, 763
Hpy188III TCNNGA 6 cut(s) 31, 197, 464, 514, 695, 772
Hpy8I GTNNAC 3 cut(s) 285, 663, 880
HpyAV CCTTC 3 cut(s) 117, 734, 738
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 79, 526, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 4 cut(s) 263, 418, 537, 554
Hsp92II CATG 2 cut(s) 472, 698
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 6 cut(s) 49, 58, 289, 510, 768, 842
LmnI GCTCC 2 cut(s) 803, 827
LweI GCATC 3 cut(s) 142, 292, 732
MaeI CTAG 3 cut(s) 122, 197, 635
MaeIII GTNAC 1 cut(s) 166
MalI GATC 6 cut(s) 51, 60, 291, 512, 770, 844
MboI GATC 6 cut(s) 49, 58, 289, 510, 768, 842
MboII GAAGA 3 cut(s) 215, 279, 347
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 3 cut(s) 236, 298, 832
MluCI AATT 7 cut(s) 35, 382, 410, 429, 494, 585, 608
MlyI GAGTC 4 cut(s) 202, 255, 665, 850
MnlI CCTC 9 cut(s) 187, 232, 244, 532, 535, 726, 831, 860, 863
MroXI GAANNNNTTC 1 cut(s) 748
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 2 cut(s) 55, 280
MspI CCGG 4 cut(s) 229, 298, 734, 883
MspR9I CCNGG 5 cut(s) 230, 298, 299, 325, 443
MvaI CCWGG 2 cut(s) 325, 443
MvnI CGCG 2 cut(s) 128, 400
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 3 cut(s) 230, 298, 299
NdeII GATC 6 cut(s) 49, 58, 289, 510, 768, 842
NlaIII CATG 2 cut(s) 472, 698
NlaIV GGNNCC 5 cut(s) 233, 234, 235, 440, 599
NmeAIII GCCGAG 1 cut(s) 241
NspI RCATGY 1 cut(s) 472
OliI CACNNNNGTG 1 cut(s) 280
PagI TCATGA 1 cut(s) 694
PdmI GAANNNNTTC 1 cut(s) 748
PfeI GAWTC 5 cut(s) 148, 220, 533, 648, 758
PflMI CCANNNNNTGG 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 323
PleI GAGTC 4 cut(s) 201, 255, 664, 850
PpsI GAGTC 4 cut(s) 201, 255, 664, 850
Psp6I CCWGG 2 cut(s) 323, 441
PspGI CCWGG 2 cut(s) 323, 441
PspN4I GGNNCC 5 cut(s) 233, 234, 235, 440, 599
PspOMI GGGCCC 1 cut(s) 232
PspPI GGNCC 4 cut(s) 232, 233, 453, 598
PstI CTGCAG 1 cut(s) 528
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 2 cut(s) 55, 280
RsaI GTAC 2 cut(s) 44, 286
RsaNI GTAC 2 cut(s) 43, 285
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 38
Sau3AI GATC 6 cut(s) 49, 58, 289, 510, 768, 842
Sau96I GGNCC 4 cut(s) 232, 233, 453, 598
SchI GAGTC 4 cut(s) 202, 255, 665, 850
ScrFI CCNGG 5 cut(s) 230, 298, 299, 325, 443
SduI GDGCHC 3 cut(s) 236, 298, 832
SetI ASST 7 cut(s) 57, 109, 282, 315, 424, 505, 799
SfaNI GCATC 3 cut(s) 142, 292, 732
SfcI CTRYAG 2 cut(s) 524, 624
SinI GGWCC 1 cut(s) 598
SmaI CCCGGG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 3 cut(s) 86, 822, 858
SmoI CTYRAG 3 cut(s) 86, 822, 858
Sse9I AATT 7 cut(s) 35, 382, 410, 429, 494, 585, 608
SsiI CCGC 2 cut(s) 184, 685
SspMI CTAG 3 cut(s) 122, 197, 635
StyD4I CCNGG 5 cut(s) 228, 296, 297, 323, 441
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 513
TasI AATT 7 cut(s) 35, 382, 410, 429, 494, 585, 608
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 5 cut(s) 148, 220, 533, 648, 758
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 463, 840
TspDTI ATGAA 7 cut(s) 17, 99, 108, 360, 683, 711, 791
TspGWI ACGGA 1 cut(s) 658
TspMI CCCGGG 1 cut(s) 297
TspRI CASTG 2 cut(s) 463, 840
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 598
XapI RAATTY 2 cut(s) 410, 494
XbaI TCTAGA 1 cut(s) 196
XceI RCATGY 1 cut(s) 472
XmaI CCCGGG 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 748
XspI CTAG 3 cut(s) 122, 197, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.