XH domain
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0426011 RchiOBHm_Chr5g0048351 RchiOBHm_Chr6g0274051 |
| rosa_multiflora | Rmu_sc0001334.1_g000028 Rmu_sc0002563.1_g000054 |
| rosa_roxburghii | Rroxscaffold_3G00221250 Rroxscaffold_3G00222960 Rroxscaffold_3G00272430 |
| rosa_rugosa | Rorug02G0083800 Rorug02G0160000 Rorug05G0351600 |
| rosa_samantha | Rh1AG405000 Rh2AG259700 Rh3AG030900 Rh3AG031200 Rh3BG031700 Rh3CG030500 Rh3DG031100 Rh3DG031400 Rh4AG058600 Rh4BG057400 Rh4BG113000 Rh5AG212400 Rh5AG317000 Rh5AG447100 Rh5AG447200 Rh5AG542200 Rh5CG299800 Rh6CG198100 Rh6DG189600 Rh7AG437200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 46 |
| AciI | CCGC | 1 cut(s) | 46 |
| AclI | AACGTT | 1 cut(s) | 206 |
| AcsI | RAATTY | 2 cut(s) | 8, 245 |
| AgsI | TTSAA | 4 cut(s) | 125, 130, 200, 268 |
| AluBI | AGCT | 4 cut(s) | 106, 139, 229, 292 |
| AluI | AGCT | 4 cut(s) | 106, 139, 229, 292 |
| AoxI | GGCC | 1 cut(s) | 300 |
| ApaI | GGGCCC | 1 cut(s) | 304 |
| ApeKI | GCWGC | 1 cut(s) | 292 |
| ApoI | RAATTY | 2 cut(s) | 8, 245 |
| AspLEI | GCGC | 2 cut(s) | 73, 223 |
| AspS9I | GGNCC | 2 cut(s) | 300, 301 |
| BaeGI | GKGCMC | 1 cut(s) | 304 |
| BanII | GRGCYC | 1 cut(s) | 304 |
| BbvI | GCAGC | 1 cut(s) | 279 |
| BfmI | CTRYAG | 1 cut(s) | 293 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 152 |
| BisI | GCNGC | 1 cut(s) | 293 |
| BlsI | GCNGC | 1 cut(s) | 294 |
| BmgT120I | GGNCC | 2 cut(s) | 300, 301 |
| BmiI | GGNNCC | 2 cut(s) | 301, 302 |
| BseMII | CTCAG | 1 cut(s) | 126 |
| BseRI | GAGGAG | 1 cut(s) | 289 |
| BseSI | GKGCMC | 1 cut(s) | 304 |
| BseXI | GCAGC | 1 cut(s) | 279 |
| BshFI | GGCC | 1 cut(s) | 302 |
| BsnI | GGCC | 1 cut(s) | 302 |
| Bsp120I | GGGCCC | 1 cut(s) | 300 |
| Bsp1286I | GDGCHC | 1 cut(s) | 304 |
| Bsp143I | GATC | 1 cut(s) | 235 |
| BspACI | CCGC | 1 cut(s) | 46 |
| BspANI | GGCC | 1 cut(s) | 302 |
| BspCNI | CTCAG | 1 cut(s) | 125 |
| BspLI | GGNNCC | 2 cut(s) | 301, 302 |
| BspMAI | CTGCAG | 1 cut(s) | 297 |
| BsrBI | CCGCTC | 1 cut(s) | 46 |
| BssMI | GATC | 1 cut(s) | 235 |
| BstC8I | GCNNGC | 1 cut(s) | 75 |
| BstDEI | CTNAG | 1 cut(s) | 112 |
| BstHHI | GCGC | 2 cut(s) | 73, 223 |
| BstKTI | GATC | 1 cut(s) | 238 |
| BstMBI | GATC | 1 cut(s) | 235 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 152 |
| BstSFI | CTRYAG | 1 cut(s) | 293 |
| BstSLI | GKGCMC | 1 cut(s) | 304 |
| BstV1I | GCAGC | 1 cut(s) | 279 |
| BsuRI | GGCC | 1 cut(s) | 302 |
| BtgZI | GCGATG | 1 cut(s) | 170 |
| BtsIMutI | CAGTG | 1 cut(s) | 257 |
| Cac8I | GCNNGC | 1 cut(s) | 75 |
| CfoI | GCGC | 2 cut(s) | 73, 223 |
| Cfr13I | GGNCC | 2 cut(s) | 300, 301 |
| CviJI | RGCY | 7 cut(s) | 106, 139, 146, 176, 229, 292, 302 |
| CviKI_1 | RGCY | 7 cut(s) | 106, 139, 146, 176, 229, 292, 302 |
| DdeI | CTNAG | 1 cut(s) | 112 |
| DpnI | GATC | 1 cut(s) | 237 |
| DpnII | GATC | 1 cut(s) | 235 |
| Eco24I | GRGCYC | 1 cut(s) | 304 |
| EcoO109I | RGGNCCY | 1 cut(s) | 300 |
| EcoRI | GAATTC | 1 cut(s) | 8 |
| EcoT38I | GRGCYC | 1 cut(s) | 304 |
| FaiI | YATR | 1 cut(s) | 306 |
| Fnu4HI | GCNGC | 1 cut(s) | 293 |
| FriOI | GRGCYC | 1 cut(s) | 304 |
| Fsp4HI | GCNGC | 1 cut(s) | 293 |
| GlaI | GCGC | 2 cut(s) | 72, 222 |
| GluI | GCNGC | 1 cut(s) | 293 |
| HaeIII | GGCC | 1 cut(s) | 302 |
| HhaI | GCGC | 2 cut(s) | 73, 223 |
| Hin6I | GCGC | 2 cut(s) | 71, 221 |
| HinP1I | GCGC | 2 cut(s) | 71, 221 |
| HindIII | AAGCTT | 1 cut(s) | 104 |
| HinfI | GANTC | 1 cut(s) | 38 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 66, 115, 244 |
| HpyAV | CCTTC | 1 cut(s) | 211 |
| HpyCH4IV | ACGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 19, 295 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 152 |
| HpyF3I | CTNAG | 1 cut(s) | 112 |
| HpySE526I | ACGT | 1 cut(s) | 206 |
| HspAI | GCGC | 2 cut(s) | 71, 221 |
| Kzo9I | GATC | 1 cut(s) | 235 |
| LmnI | GCTCC | 3 cut(s) | 144, 226, 276 |
| LpnPI | CCDG | 6 cut(s) | 59, 137, 149, 191, 209, 281 |
| Lsp1109I | GCAGC | 1 cut(s) | 279 |
| MaeII | ACGT | 1 cut(s) | 206 |
| MalI | GATC | 1 cut(s) | 237 |
| MbiI | CCGCTC | 1 cut(s) | 46 |
| MboI | GATC | 1 cut(s) | 235 |
| MboII | GAAGA | 4 cut(s) | 34, 61, 193, 196 |
| MhlI | GDGCHC | 1 cut(s) | 304 |
| MluCI | AATT | 4 cut(s) | 8, 120, 125, 245 |
| MnlI | CCTC | 2 cut(s) | 157, 267 |
| MseI | TTAA | 2 cut(s) | 189, 209 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 152 |
| NdeII | GATC | 1 cut(s) | 235 |
| NlaIV | GGNNCC | 2 cut(s) | 301, 302 |
| PfeI | GAWTC | 1 cut(s) | 38 |
| PkrI | GCNGC | 1 cut(s) | 294 |
| Psp1406I | AACGTT | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 2 cut(s) | 301, 302 |
| PspOMI | GGGCCC | 1 cut(s) | 300 |
| PspPI | GGNCC | 2 cut(s) | 300, 301 |
| PstI | CTGCAG | 1 cut(s) | 297 |
| SaqAI | TTAA | 2 cut(s) | 189, 209 |
| SatI | GCNGC | 1 cut(s) | 293 |
| Sau3AI | GATC | 1 cut(s) | 235 |
| Sau96I | GGNCC | 2 cut(s) | 300, 301 |
| SduI | GDGCHC | 1 cut(s) | 304 |
| SetI | ASST | 5 cut(s) | 108, 141, 209, 231, 294 |
| SfcI | CTRYAG | 1 cut(s) | 293 |
| Sse9I | AATT | 4 cut(s) | 8, 120, 125, 245 |
| SsiI | CCGC | 1 cut(s) | 46 |
| TaiI | ACGT | 1 cut(s) | 209 |
| TasI | AATT | 4 cut(s) | 8, 120, 125, 245 |
| TfiI | GAWTC | 1 cut(s) | 38 |
| Tru1I | TTAA | 2 cut(s) | 189, 209 |
| Tru9I | TTAA | 2 cut(s) | 189, 209 |
| TscAI | CASTG | 1 cut(s) | 264 |
| TseI | GCWGC | 1 cut(s) | 292 |
| TspDTI | ATGAA | 1 cut(s) | 173 |
| TspRI | CASTG | 1 cut(s) | 264 |
| XapI | RAATTY | 2 cut(s) | 8, 245 |