Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

OG0004883

Physical Location & Seq

Genomic Coordinates Reverse (-)

186607 .. 187122

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgatgcagagccataatgttgtagattataatgaaaaagtggtggatggattttacgatgtgtatggaattaccttgaattcctttagacaagggaagatgccgttgttggtggaatttcgagctgtatcagtttcagataatgtcgactatgatgtcatattagttaaccggtttgttgatactgaactccaacaactcgagaaaagagactatgctgcttctctagagtggatttctcaacatggtctacttttaagtggcttgattcagaagattgctgatattgttgttggtagaatgggtggtccagttggagatgaggatgagattttaagaaggtggaaaataaggaggcatgagttgcggagttcaatgaacactatcattcttcccctcggaaaaattgatgttggactttcacgccaccgggcccttctctttaaggttttgacagtttttaaaactcaccttaattgtcaatctgaatcattggaaaattatgtgcactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

EDR1 Pkinase_Tyr

Protein Analysis

171

Amino Acids

19.71

Weight (kDa)

6.29

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004883)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426011 RchiOBHm_Chr5g0048351 RchiOBHm_Chr6g0274051
rosa_multiflora	Rmu_sc0001334.1_g000028 Rmu_sc0002563.1_g000054
rosa_roxburghii	Rroxscaffold_3G00221250 Rroxscaffold_3G00222960 Rroxscaffold_3G00272430
rosa_rugosa	Rorug02G0083800 Rorug02G0160000 Rorug05G0351600
rosa_samantha	Rh1AG405000 Rh2AG259700 Rh3AG030900 Rh3AG031200 Rh3BG031700 Rh3CG030500 Rh3DG031100 Rh3DG031400 Rh4AG058600 Rh4BG057400 Rh4BG113000 Rh5AG212400 Rh5AG317000 Rh5AG447100 Rh5AG447200 Rh5AG542200 Rh5CG299800 Rh6CG198100 Rh6DG189600 Rh7AG437200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
AasI	GACNNNNNNGTC	1 cut(s)	155
AccI	GTMKAC	2 cut(s)	147, 250
AciI	CCGC	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	79, 116
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	79, 375
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	204
Alw44I	GTGCAC	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	432
ApaI	GGGCCC	1 cut(s)	436
ApaLI	GTGCAC	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	79, 116
AsiGI	ACCGGT	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	308, 432, 433
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	308
BaeGI	GKGCMC	2 cut(s)	436, 510
BanII	GRGCYC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	3 cut(s)	308, 432, 433
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	171
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	52, 331
BseNI	ACTGG	1 cut(s)	311
BseSI	GKGCMC	2 cut(s)	436, 510
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	434
BshTI	ACCGGT	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	510
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	172, 430
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	200
Bsp120I	GGGCCC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	436, 510
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	434
BspLI	GGNNCC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	52, 331
BstMAI	GTCTC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	429
BstSLI	GKGCMC	2 cut(s)	436, 510
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	52, 331
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	308, 432, 433
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	2 cut(s)	245, 359
CviJI	RGCY	4 cut(s)	12, 125, 264, 434
CviKI_1	RGCY	4 cut(s)	12, 125, 264, 434
DraI	TTTAAA	1 cut(s)	463
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	436
FaeI	CATG	2 cut(s)	248, 362
FaiI	YATR	9 cut(s)	15, 30, 66, 153, 161, 216, 246, 360, 504
FatI	CATG	2 cut(s)	244, 358
FblI	GTMKAC	2 cut(s)	147, 250
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	2 cut(s)	59, 338
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	2 cut(s)	172, 430
Hin1II	CATG	2 cut(s)	248, 362
HincII	GTYRAC	2 cut(s)	148, 169
HindII	GTYRAC	2 cut(s)	148, 169
HinfI	GANTC	2 cut(s)	268, 488
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	172, 430
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	4 cut(s)	148, 169, 251, 508
Hpy188I	TCNGA	4 cut(s)	139, 273, 401, 487
Hpy188III	TCNNGA	2 cut(s)	202, 227
Hpy8I	GTNNAC	4 cut(s)	148, 169, 251, 508
HpyAV	CCTTC	2 cut(s)	333, 446
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	2 cut(s)	7, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	248, 362
KspAI	GTTAAC	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	185, 324, 443
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	227
MboII	GAAGA	3 cut(s)	109, 286, 383
MhlI	GDGCHC	2 cut(s)	436, 510
MluCI	AATT	6 cut(s)	69, 79, 116, 405, 475, 499
MmeI	TCCRAC	3 cut(s)	217, 295, 394
MnlI	CCTC	3 cut(s)	316, 348, 407
MseI	TTAA	7 cut(s)	168, 257, 335, 444, 462, 474, 514
MspI	CCGG	2 cut(s)	172, 430
MspR9I	CCNGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	431
NlaIII	CATG	2 cut(s)	248, 362
NlaIV	GGNNCC	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	268, 488
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	434
PspOMI	GGGCCC	1 cut(s)	432
PspPI	GGNCC	3 cut(s)	308, 432, 433
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	7 cut(s)	168, 257, 335, 444, 462, 474, 514
SatI	GCNGC	1 cut(s)	219
Sau96I	GGNCC	3 cut(s)	308, 432, 433
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	436, 510
SetI	ASST	5 cut(s)	77, 127, 344, 450, 474
SfaNI	GCATC	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	6 cut(s)	69, 79, 116, 405, 475, 499
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	121, 147, 201
TasI	AATT	6 cut(s)	69, 79, 116, 405, 475, 499
TfiI	GAWTC	2 cut(s)	268, 488
Tru1I	TTAA	7 cut(s)	168, 257, 335, 444, 462, 474, 514
Tru9I	TTAA	7 cut(s)	168, 257, 335, 444, 462, 474, 514
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	48, 392
VneI	GTGCAC	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	79, 116
XbaI	TCTAGA	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	200
XmiI	GTMKAC	2 cut(s)	147, 250
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.