Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861 |
| rosa_laevigata | RLG00000001228 RLG00000013425 RLG00000013426 |
| rosa_multiflora | Rmu_sc0002030.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770 |
| rosa_rugosa | Rorug06G0096800 Rorug06G0096900 |
| rosa_samantha | Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100 |
| rosa_wichuraiana | Rw6G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 113 |
| AciI | CCGC | 3 cut(s) | 113, 610, 616 |
| AclWI | GGATC | 4 cut(s) | 62, 295, 450, 491 |
| AcsI | RAATTY | 1 cut(s) | 770 |
| AcuI | CTGAAG | 2 cut(s) | 963, 1020 |
| AfaI | GTAC | 1 cut(s) | 466 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 913 |
| AflIII | ACRYGT | 1 cut(s) | 427 |
| AjiI | CACGTC | 1 cut(s) | 1063 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 359, 391 |
| AluBI | AGCT | 8 cut(s) | 312, 439, 458, 544, 811, 939, 988, 1074 |
| AluI | AGCT | 8 cut(s) | 312, 439, 458, 544, 811, 939, 988, 1074 |
| Alw26I | GTCTC | 3 cut(s) | 13, 248, 673 |
| AlwI | GGATC | 4 cut(s) | 62, 295, 450, 491 |
| Ama87I | CYCGRG | 1 cut(s) | 481 |
| AoxI | GGCC | 3 cut(s) | 567, 662, 904 |
| ApeKI | GCWGC | 2 cut(s) | 894, 1022 |
| ApoI | RAATTY | 1 cut(s) | 770 |
| AspS9I | GGNCC | 4 cut(s) | 115, 567, 583, 932 |
| AsuII | TTCGAA | 1 cut(s) | 1048 |
| AvaI | CYCGRG | 1 cut(s) | 481 |
| AvaII | GGWCC | 3 cut(s) | 115, 583, 932 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 274, 306 |
| BbsI | GAAGAC | 2 cut(s) | 374, 1065 |
| BbvCI | CCTCAGC | 1 cut(s) | 825 |
| BbvI | GCAGC | 2 cut(s) | 906, 1009 |
| BccI | CCATC | 1 cut(s) | 170 |
| BclI | TGATCA | 1 cut(s) | 502 |
| BcoDI | GTCTC | 3 cut(s) | 13, 248, 673 |
| BfaI | CTAG | 2 cut(s) | 936, 1055 |
| BfmI | CTRYAG | 1 cut(s) | 892 |
| BisI | GCNGC | 2 cut(s) | 895, 1023 |
| BlsI | GCNGC | 2 cut(s) | 896, 1024 |
| Bme18I | GGWCC | 3 cut(s) | 115, 583, 932 |
| BmeT110I | CYCGRG | 1 cut(s) | 481 |
| BmgBI | CACGTC | 1 cut(s) | 1063 |
| BmgT120I | GGNCC | 4 cut(s) | 115, 567, 583, 932 |
| BmiI | GGNNCC | 1 cut(s) | 996 |
| BmsI | GCATC | 3 cut(s) | 250, 292, 996 |
| BpiI | GAAGAC | 2 cut(s) | 374, 1065 |
| BpmI | CTGGAG | 3 cut(s) | 507, 587, 1010 |
| Bpu10I | CCTNAGC | 1 cut(s) | 825 |
| Bpu14I | TTCGAA | 1 cut(s) | 1048 |
| BpuEI | CTTGAG | 2 cut(s) | 746, 827 |
| BsaBI | GATNNNNATC | 2 cut(s) | 501, 1033 |
| BsaJI | CCNNGG | 1 cut(s) | 356 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 247, 277 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 913 |
| Bse1I | ACTGG | 2 cut(s) | 554, 862 |
| Bse8I | GATNNNNATC | 2 cut(s) | 501, 1033 |
| BseDI | CCNNGG | 1 cut(s) | 356 |
| BseGI | GGATG | 3 cut(s) | 186, 204, 307 |
| BseJI | GATNNNNATC | 2 cut(s) | 501, 1033 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 913 |
| BseMII | CTCAG | 5 cut(s) | 225, 269, 312, 753, 816 |
| BseNI | ACTGG | 2 cut(s) | 554, 862 |
| BseXI | GCAGC | 2 cut(s) | 906, 1009 |
| BshFI | GGCC | 3 cut(s) | 569, 664, 906 |
| BsiHKCI | CYCGRG | 1 cut(s) | 481 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 913 |
| BsmAI | GTCTC | 3 cut(s) | 13, 248, 673 |
| BsnI | GGCC | 3 cut(s) | 569, 664, 906 |
| BsoBI | CYCGRG | 1 cut(s) | 481 |
| Bsp119I | TTCGAA | 1 cut(s) | 1048 |
| Bsp143I | GATC | 7 cut(s) | 54, 287, 442, 496, 502, 526, 628 |
| BspACI | CCGC | 3 cut(s) | 113, 610, 616 |
| BspANI | GGCC | 3 cut(s) | 569, 664, 906 |
| BspCNI | CTCAG | 5 cut(s) | 226, 270, 313, 752, 817 |
| BspLI | GGNNCC | 1 cut(s) | 996 |
| BspMAI | CTGCAG | 1 cut(s) | 896 |
| BspPI | GGATC | 4 cut(s) | 62, 295, 450, 491 |
| BspT104I | TTCGAA | 1 cut(s) | 1048 |
| BsrBI | CCGCTC | 1 cut(s) | 113 |
| BsrI | ACTGG | 2 cut(s) | 554, 862 |
| BssECI | CCNNGG | 1 cut(s) | 356 |
| BssMI | GATC | 7 cut(s) | 54, 287, 442, 496, 502, 526, 628 |
| Bst4CI | ACNGT | 3 cut(s) | 297, 357, 684 |
| Bst6I | CTCTTC | 1 cut(s) | 996 |
| BstBI | TTCGAA | 1 cut(s) | 1048 |
| BstC8I | GCNNGC | 2 cut(s) | 859, 904 |
| BstDEI | CTNAG | 6 cut(s) | 234, 278, 321, 739, 825, 1077 |
| BstDSI | CCRYGG | 1 cut(s) | 356 |
| BstF5I | GGATG | 3 cut(s) | 186, 204, 307 |
| BstKTI | GATC | 7 cut(s) | 57, 290, 445, 499, 505, 529, 631 |
| BstMAI | GTCTC | 3 cut(s) | 13, 248, 673 |
| BstMBI | GATC | 7 cut(s) | 54, 287, 442, 496, 502, 526, 628 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 550, 607, 894, 903 |
| BstNSI | RCATGY | 2 cut(s) | 431, 861 |
| BstSFI | CTRYAG | 1 cut(s) | 892 |
| BstV1I | GCAGC | 2 cut(s) | 906, 1009 |
| BstV2I | GAAGAC | 2 cut(s) | 374, 1065 |
| BstX2I | RGATCY | 3 cut(s) | 287, 442, 496 |
| BstYI | RGATCY | 3 cut(s) | 287, 442, 496 |
| BsuRI | GGCC | 3 cut(s) | 569, 664, 906 |
| BtgI | CCRYGG | 1 cut(s) | 356 |
| BtgZI | GCGATG | 1 cut(s) | 195 |
| BtrI | CACGTC | 1 cut(s) | 1063 |
| BtsCI | GGATG | 3 cut(s) | 186, 204, 307 |
| Cac8I | GCNNGC | 2 cut(s) | 859, 904 |
| Cfr13I | GGNCC | 4 cut(s) | 115, 567, 583, 932 |
| CseI | GACGC | 1 cut(s) | 877 |
| Csp6I | GTAC | 1 cut(s) | 465 |
| CviAII | CATG | 7 cut(s) | 51, 85, 344, 428, 598, 668, 858 |
| CviQI | GTAC | 1 cut(s) | 465 |
| DdeI | CTNAG | 6 cut(s) | 234, 278, 321, 739, 825, 1077 |
| DpnI | GATC | 7 cut(s) | 56, 289, 444, 498, 504, 528, 630 |
| DpnII | GATC | 7 cut(s) | 54, 287, 442, 496, 502, 526, 628 |
| Eam1104I | CTCTTC | 1 cut(s) | 996 |
| EarI | CTCTTC | 1 cut(s) | 996 |
| Eco47I | GGWCC | 3 cut(s) | 115, 583, 932 |
| Eco57I | CTGAAG | 2 cut(s) | 963, 1020 |
| Eco88I | CYCGRG | 1 cut(s) | 481 |
| FaeI | CATG | 7 cut(s) | 54, 88, 347, 431, 601, 671, 861 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1050 |
| FatI | CATG | 7 cut(s) | 50, 84, 343, 427, 597, 667, 857 |
| FauI | CCCGC | 1 cut(s) | 609 |
| FauNDI | CATATG | 1 cut(s) | 160 |
| FbaI | TGATCA | 1 cut(s) | 502 |
| Fnu4HI | GCNGC | 2 cut(s) | 895, 1023 |
| FokI | GGATG | 3 cut(s) | 173, 211, 314 |
| Fsp4HI | GCNGC | 2 cut(s) | 895, 1023 |
| FspBI | CTAG | 2 cut(s) | 936, 1055 |
| GluI | GCNGC | 2 cut(s) | 895, 1023 |
| GsuI | CTGGAG | 3 cut(s) | 507, 587, 1010 |
| HaeIII | GGCC | 3 cut(s) | 569, 664, 906 |
| HgaI | GACGC | 1 cut(s) | 877 |
| Hin1II | CATG | 7 cut(s) | 54, 88, 347, 431, 601, 671, 861 |
| HincII | GTYRAC | 1 cut(s) | 204 |
| HindII | GTYRAC | 1 cut(s) | 204 |
| HinfI | GANTC | 2 cut(s) | 370, 653 |
| Hpy166II | GTNNAC | 3 cut(s) | 148, 204, 465 |
| Hpy188I | TCNGA | 9 cut(s) | 59, 110, 191, 235, 322, 639, 742, 943, 1039 |
| Hpy8I | GTNNAC | 3 cut(s) | 148, 204, 465 |
| HpyAV | CCTTC | 4 cut(s) | 54, 83, 240, 654 |
| HpyCH4III | ACNGT | 3 cut(s) | 297, 357, 684 |
| HpyCH4IV | ACGT | 3 cut(s) | 759, 870, 1062 |
| HpyCH4V | TGCA | 6 cut(s) | 136, 424, 894, 920, 958, 1025 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 550, 607, 894, 903 |
| HpyF3I | CTNAG | 6 cut(s) | 234, 278, 321, 739, 825, 1077 |
| HpySE526I | ACGT | 3 cut(s) | 759, 870, 1062 |
| Hsp92II | CATG | 7 cut(s) | 54, 88, 347, 431, 601, 671, 861 |
| Ksp22I | TGATCA | 1 cut(s) | 502 |
| Kzo9I | GATC | 7 cut(s) | 54, 287, 442, 496, 502, 526, 628 |
| LmnI | GCTCC | 2 cut(s) | 268, 606 |
| Lsp1109I | GCAGC | 2 cut(s) | 906, 1009 |
| LweI | GCATC | 3 cut(s) | 250, 292, 996 |
| MaeI | CTAG | 2 cut(s) | 936, 1055 |
| MaeII | ACGT | 3 cut(s) | 759, 870, 1062 |
| MaeIII | GTNAC | 4 cut(s) | 163, 346, 684, 798 |
| MalI | GATC | 7 cut(s) | 56, 289, 444, 498, 504, 528, 630 |
| MbiI | CCGCTC | 1 cut(s) | 113 |
| MboI | GATC | 7 cut(s) | 54, 287, 442, 496, 502, 526, 628 |
| MboII | GAAGA | 9 cut(s) | 379, 437, 524, 702, 709, 842, 956, 1013, 1070 |
| MfeI | CAATTG | 3 cut(s) | 36, 272, 328 |
| MflI | RGATCY | 3 cut(s) | 287, 442, 496 |
| MluCI | AATT | 7 cut(s) | 36, 218, 272, 328, 620, 770, 959 |
| MlyI | GAGTC | 1 cut(s) | 364 |
| MmeI | TCCRAC | 1 cut(s) | 279 |
| MseI | TTAA | 1 cut(s) | 1068 |
| MunI | CAATTG | 3 cut(s) | 36, 272, 328 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 550, 607, 894, 903 |
| NdeI | CATATG | 1 cut(s) | 160 |
| NdeII | GATC | 7 cut(s) | 54, 287, 442, 496, 502, 526, 628 |
| NlaIII | CATG | 7 cut(s) | 54, 88, 347, 431, 601, 671, 861 |
| NlaIV | GGNNCC | 1 cut(s) | 996 |
| NmuCI | GTSAC | 3 cut(s) | 163, 346, 684 |
| NspI | RCATGY | 2 cut(s) | 431, 861 |
| NspV | TTCGAA | 1 cut(s) | 1048 |
| PaeI | GCATGC | 1 cut(s) | 861 |
| PciI | ACATGT | 1 cut(s) | 427 |
| PfeI | GAWTC | 1 cut(s) | 653 |
| PflFI | GACNNNGTC | 1 cut(s) | 344 |
| PkrI | GCNGC | 2 cut(s) | 896, 1024 |
| PleI | GAGTC | 1 cut(s) | 364 |
| PpsI | GAGTC | 1 cut(s) | 364 |
| PscI | ACATGT | 1 cut(s) | 427 |
| PspN4I | GGNNCC | 1 cut(s) | 996 |
| PspPI | GGNCC | 4 cut(s) | 115, 567, 583, 932 |
| PstI | CTGCAG | 1 cut(s) | 896 |
| PsuI | RGATCY | 3 cut(s) | 287, 442, 496 |
| PsyI | GACNNNGTC | 1 cut(s) | 344 |
| RsaI | GTAC | 1 cut(s) | 466 |
| RsaNI | GTAC | 1 cut(s) | 465 |
| SaqAI | TTAA | 1 cut(s) | 1068 |
| SatI | GCNGC | 2 cut(s) | 895, 1023 |
| Sau3AI | GATC | 7 cut(s) | 54, 287, 442, 496, 502, 526, 628 |
| Sau96I | GGNCC | 4 cut(s) | 115, 567, 583, 932 |
| SchI | GAGTC | 1 cut(s) | 364 |
| SfaNI | GCATC | 3 cut(s) | 250, 292, 996 |
| SfcI | CTRYAG | 1 cut(s) | 892 |
| SfuI | TTCGAA | 1 cut(s) | 1048 |
| SinI | GGWCC | 3 cut(s) | 115, 583, 932 |
| SmlI | CTYRAG | 2 cut(s) | 725, 806 |
| SmoI | CTYRAG | 2 cut(s) | 725, 806 |
| SphI | GCATGC | 1 cut(s) | 861 |
| Sse9I | AATT | 7 cut(s) | 36, 218, 272, 328, 620, 770, 959 |
| SsiI | CCGC | 3 cut(s) | 113, 610, 616 |
| SspMI | CTAG | 2 cut(s) | 936, 1055 |
| TaaI | ACNGT | 3 cut(s) | 297, 357, 684 |
| TaiI | ACGT | 3 cut(s) | 762, 873, 1065 |
| TaqI | TCGA | 3 cut(s) | 208, 588, 1048 |
| TasI | AATT | 7 cut(s) | 36, 218, 272, 328, 620, 770, 959 |
| TfiI | GAWTC | 1 cut(s) | 653 |
| Tru1I | TTAA | 1 cut(s) | 1068 |
| Tru9I | TTAA | 1 cut(s) | 1068 |
| TseFI | GTSAC | 3 cut(s) | 163, 346, 684 |
| TseI | GCWGC | 2 cut(s) | 894, 1022 |
| Tsp45I | GTSAC | 3 cut(s) | 163, 346, 684 |
| TspDTI | ATGAA | 4 cut(s) | 39, 731, 763, 989 |
| TspGWI | ACGGA | 1 cut(s) | 438 |
| Tth111I | GACNNNGTC | 1 cut(s) | 344 |
| VpaK11BI | GGWCC | 3 cut(s) | 115, 583, 932 |
| XapI | RAATTY | 1 cut(s) | 770 |
| XceI | RCATGY | 2 cut(s) | 431, 861 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 577 |
| XspI | CTAG | 2 cut(s) | 936, 1055 |