Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006431

Physical Location & Seq

Genomic Coordinates Reverse (-)

40187159 .. 40187910

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG212700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAATATCAATGAGCTGGAGGAACCTGGAGAGATGCCACTGGACATTGCTGCAAGATTTACATGCGATATTTTTCGAACGCGGGAACACGTGCTTAAAGGAGCAAGGCTGTTAGCAGCTGTTGAGATTAGTTTGGAACCTATTATCTGGCAGTATATGCGAAGAAAATACTTTGACGCCCTTGTATTACGTGCAAGGCTATCAAGGAAGACAATGTGGCCTAAAGTAGGAAAGAGATCAAGTAAATTCAAGGACGAAGACTTGTTTCGTATCCAGAAGGCTAAAGATAATGGTACTCTTGATTTCACCATAAAGCTGCTGGATGATGATGTAGAAGCCTTGCATGATGATGATGATACAAATAACAACAATGATTTGACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

128

Amino Acids

14.97

Weight (kDa)

5.43

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006431)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861
rosa_laevigata	RLG00000001228 RLG00000013425 RLG00000013426
rosa_multiflora	Rmu_sc0002030.1_g000010
rosa_roxburghii	Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770
rosa_rugosa	Rorug06G0096800 Rorug06G0096900
rosa_samantha	Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100
rosa_wichuraiana	Rw6G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	245
AcvI	CACGTG	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	16, 119, 316
AluI	AGCT	3 cut(s)	16, 119, 316
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	50, 116, 316
ApoI	RAATTY	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	76
BbrPI	CACGTG	1 cut(s)	91
BbsI	GAAGAC	2 cut(s)	215, 264
BbvI	GCAGC	3 cut(s)	37, 128, 303
BciT130I	CCWGG	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	3 cut(s)	51, 117, 317
BlsI	GCNGC	3 cut(s)	52, 118, 318
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	24, 138
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	24
BpiI	GAAGAC	2 cut(s)	215, 264
BpmI	CTGGAG	2 cut(s)	38, 48
Bpu14I	TTCGAA	1 cut(s)	76
BsaAI	YACGTR	2 cut(s)	91, 191
BsaHI	GRCGYC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	37, 128, 303
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	227
BsnI	GGCC	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	24, 138
BspT104I	TTCGAA	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstBAI	YACGTR	2 cut(s)	91, 191
BstBI	TTCGAA	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	37, 128, 303
BstV2I	GAAGAC	2 cut(s)	215, 264
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	38
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	2 cut(s)	63, 344
CviJI	RGCY	8 cut(s)	16, 109, 119, 199, 220, 281, 316, 338
CviKI_1	RGCY	8 cut(s)	16, 109, 119, 199, 220, 281, 316, 338
CviQI	GTAC	1 cut(s)	294
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eco72I	CACGTG	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	66, 347
FaiI	YATR	5 cut(s)	64, 156, 158, 311, 345
FatI	CATG	2 cut(s)	62, 343
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	51, 117, 317
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	51, 117, 317
GluI	GCNGC	3 cut(s)	51, 117, 317
GsuI	CTGGAG	2 cut(s)	38, 48
HaeIII	GGCC	1 cut(s)	220
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	66, 347
HphI	GGTGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	274, 299
HpyAV	CCTTC	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	90, 190
HpyCH4V	TGCA	3 cut(s)	53, 194, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpySE526I	ACGT	2 cut(s)	90, 190
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	66, 347
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	7 cut(s)	2, 12, 26, 39, 133, 287, 305
Lsp1109I	GCAGC	3 cut(s)	37, 128, 303
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	2 cut(s)	90, 190
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	3 cut(s)	174, 220, 269
MluCI	AATT	1 cut(s)	245
MnlI	CCTC	1 cut(s)	13
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	66, 347
NlaIV	GGNNCC	2 cut(s)	24, 138
NspI	RCATGY	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	52, 118, 318
PmaCI	CACGTG	1 cut(s)	91
PmlI	CACGTG	1 cut(s)	91
Ppu21I	YACGTR	2 cut(s)	91, 191
Psp6I	CCWGG	1 cut(s)	25
PspCI	CACGTG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	24, 138
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	51, 117, 317
Sau3AI	GATC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	7 cut(s)	18, 28, 93, 121, 142, 193, 318
SfaNI	GCATC	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	25
TaiI	ACGT	2 cut(s)	93, 193
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	3 cut(s)	50, 116, 316
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	45
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.