Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861 |
| rosa_laevigata | RLG00000001228 RLG00000013425 RLG00000013426 |
| rosa_multiflora | Rmu_sc0002030.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770 |
| rosa_rugosa | Rorug06G0096800 Rorug06G0096900 |
| rosa_samantha | Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100 |
| rosa_wichuraiana | Rw6G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 13, 19 |
| AcsI | RAATTY | 1 cut(s) | 182 |
| AcuI | CTGAAG | 1 cut(s) | 375 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 280, 325 |
| AgsI | TTSAA | 4 cut(s) | 28, 113, 176, 199 |
| AluBI | AGCT | 2 cut(s) | 223, 351 |
| AluI | AGCT | 2 cut(s) | 223, 351 |
| AoxI | GGCC | 1 cut(s) | 316 |
| ApeKI | GCWGC | 1 cut(s) | 306 |
| ApoI | RAATTY | 1 cut(s) | 182 |
| AspS9I | GGNCC | 1 cut(s) | 344 |
| AvaII | GGWCC | 1 cut(s) | 344 |
| BbvCI | CCTCAGC | 1 cut(s) | 237 |
| BbvI | GCAGC | 1 cut(s) | 318 |
| BfaI | CTAG | 1 cut(s) | 348 |
| BfmI | CTRYAG | 1 cut(s) | 304 |
| BisI | GCNGC | 1 cut(s) | 307 |
| BlsI | GCNGC | 1 cut(s) | 308 |
| Bme18I | GGWCC | 1 cut(s) | 344 |
| BmgT120I | GGNCC | 1 cut(s) | 344 |
| BmiI | GGNNCC | 1 cut(s) | 288 |
| Bpu10I | CCTNAGC | 1 cut(s) | 237 |
| BpuEI | CTTGAG | 2 cut(s) | 152, 239 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 280, 325 |
| Bse1I | ACTGG | 2 cut(s) | 274, 290 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 280, 325 |
| BseMII | CTCAG | 2 cut(s) | 159, 228 |
| BseNI | ACTGG | 2 cut(s) | 274, 290 |
| BseXI | GCAGC | 1 cut(s) | 318 |
| BshFI | GGCC | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 280, 325 |
| BsnI | GGCC | 1 cut(s) | 318 |
| Bsp143I | GATC | 1 cut(s) | 31 |
| BspACI | CCGC | 2 cut(s) | 13, 19 |
| BspANI | GGCC | 1 cut(s) | 318 |
| BspCNI | CTCAG | 2 cut(s) | 158, 229 |
| BspLI | GGNNCC | 1 cut(s) | 288 |
| BspMAI | CTGCAG | 1 cut(s) | 308 |
| BsrI | ACTGG | 2 cut(s) | 274, 290 |
| BssMI | GATC | 1 cut(s) | 31 |
| Bst6I | CTCTTC | 1 cut(s) | 72 |
| BstC8I | GCNNGC | 3 cut(s) | 271, 316, 334 |
| BstDEI | CTNAG | 2 cut(s) | 145, 237 |
| BstKTI | GATC | 1 cut(s) | 34 |
| BstMBI | GATC | 1 cut(s) | 31 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 220, 306, 315 |
| BstNSI | RCATGY | 2 cut(s) | 273, 336 |
| BstSFI | CTRYAG | 1 cut(s) | 304 |
| BstV1I | GCAGC | 1 cut(s) | 318 |
| BsuRI | GGCC | 1 cut(s) | 318 |
| Cac8I | GCNNGC | 3 cut(s) | 271, 316, 334 |
| Cfr13I | GGNCC | 1 cut(s) | 344 |
| CseI | GACGC | 1 cut(s) | 289 |
| CviAII | CATG | 3 cut(s) | 74, 270, 333 |
| CviJI | RGCY | 4 cut(s) | 223, 314, 318, 351 |
| CviKI_1 | RGCY | 4 cut(s) | 223, 314, 318, 351 |
| DdeI | CTNAG | 2 cut(s) | 145, 237 |
| DpnI | GATC | 1 cut(s) | 33 |
| DpnII | GATC | 1 cut(s) | 31 |
| Eam1104I | CTCTTC | 1 cut(s) | 72 |
| EarI | CTCTTC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 1 cut(s) | 344 |
| Eco57I | CTGAAG | 1 cut(s) | 375 |
| FaeI | CATG | 3 cut(s) | 77, 273, 336 |
| FatI | CATG | 3 cut(s) | 73, 269, 332 |
| FauI | CCCGC | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 307 |
| Fsp4HI | GCNGC | 1 cut(s) | 307 |
| FspBI | CTAG | 1 cut(s) | 348 |
| GluI | GCNGC | 1 cut(s) | 307 |
| HaeIII | GGCC | 1 cut(s) | 318 |
| HgaI | GACGC | 1 cut(s) | 289 |
| Hin1II | CATG | 3 cut(s) | 77, 273, 336 |
| HinfI | GANTC | 2 cut(s) | 59, 85 |
| Hpy166II | GTNNAC | 1 cut(s) | 71 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 148, 355 |
| Hpy188III | TCNNGA | 4 cut(s) | 7, 63, 203, 218 |
| Hpy8I | GTNNAC | 1 cut(s) | 71 |
| Hpy99I | CGWCG | 1 cut(s) | 59 |
| HpyCH4IV | ACGT | 1 cut(s) | 171 |
| HpyCH4V | TGCA | 4 cut(s) | 306, 332, 336, 370 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 220, 306, 315 |
| HpyF3I | CTNAG | 2 cut(s) | 145, 237 |
| HpySE526I | ACGT | 1 cut(s) | 171 |
| Hsp92II | CATG | 3 cut(s) | 77, 273, 336 |
| Kzo9I | GATC | 1 cut(s) | 31 |
| LmnI | GCTCC | 1 cut(s) | 9 |
| LpnPI | CCDG | 5 cut(s) | 20, 287, 300, 303, 332 |
| Lsp1109I | GCAGC | 1 cut(s) | 318 |
| MaeI | CTAG | 1 cut(s) | 348 |
| MaeII | ACGT | 1 cut(s) | 171 |
| MaeIII | GTNAC | 1 cut(s) | 90 |
| MalI | GATC | 1 cut(s) | 33 |
| MboI | GATC | 1 cut(s) | 31 |
| MboII | GAAGA | 5 cut(s) | 89, 108, 115, 254, 368 |
| MluCI | AATT | 2 cut(s) | 23, 182 |
| MlyI | GAGTC | 1 cut(s) | 94 |
| MnlI | CCTC | 6 cut(s) | 154, 154, 160, 225, 232, 318 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 220, 306, 315 |
| NdeII | GATC | 1 cut(s) | 31 |
| NlaIII | CATG | 3 cut(s) | 77, 273, 336 |
| NlaIV | GGNNCC | 1 cut(s) | 288 |
| NmuCI | GTSAC | 1 cut(s) | 90 |
| NspI | RCATGY | 2 cut(s) | 273, 336 |
| PaeI | GCATGC | 2 cut(s) | 273, 336 |
| PfeI | GAWTC | 1 cut(s) | 59 |
| PkrI | GCNGC | 1 cut(s) | 308 |
| PleI | GAGTC | 1 cut(s) | 93 |
| PpsI | GAGTC | 1 cut(s) | 93 |
| PspN4I | GGNNCC | 1 cut(s) | 288 |
| PspPI | GGNCC | 1 cut(s) | 344 |
| PstI | CTGCAG | 1 cut(s) | 308 |
| SatI | GCNGC | 1 cut(s) | 307 |
| Sau3AI | GATC | 1 cut(s) | 31 |
| Sau96I | GGNCC | 1 cut(s) | 344 |
| SchI | GAGTC | 1 cut(s) | 94 |
| SetI | ASST | 6 cut(s) | 146, 165, 174, 225, 285, 353 |
| SfcI | CTRYAG | 1 cut(s) | 304 |
| SinI | GGWCC | 1 cut(s) | 344 |
| SmlI | CTYRAG | 2 cut(s) | 131, 218 |
| SmoI | CTYRAG | 2 cut(s) | 131, 218 |
| SphI | GCATGC | 2 cut(s) | 273, 336 |
| Sse9I | AATT | 2 cut(s) | 23, 182 |
| SsiI | CCGC | 2 cut(s) | 13, 19 |
| SspMI | CTAG | 1 cut(s) | 348 |
| TaiI | ACGT | 1 cut(s) | 174 |
| TaqII | GACCGA | 1 cut(s) | 332 |
| TasI | AATT | 2 cut(s) | 23, 182 |
| TfiI | GAWTC | 1 cut(s) | 59 |
| TseFI | GTSAC | 1 cut(s) | 90 |
| TseI | GCWGC | 1 cut(s) | 306 |
| Tsp45I | GTSAC | 1 cut(s) | 90 |
| TspDTI | ATGAA | 3 cut(s) | 90, 137, 175 |
| VpaK11BI | GGWCC | 1 cut(s) | 344 |
| XapI | RAATTY | 1 cut(s) | 182 |
| XceI | RCATGY | 2 cut(s) | 273, 336 |
| XspI | CTAG | 1 cut(s) | 348 |