Rh6CG215400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006431
Physical Location & Seq
Reverse (-)
35809141 .. 35814052
4912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG215400.1

Sequence Viewer

Length: 375 bp
ATGGGAGGCCGATGGTTCTGCGAGAGAAATCACAGACGTTGCCTGGATGAAGAAGCCAAGTTCAAAAACCTCGATCAGTTTATGCGGAATTTACTAGGACCGGCCCTGATCGTACAAACCCCAGCCCTTGTATCATCCTCAGTGCGATCTGATCGAACCCGAACATCCCTCCGCTCAATCTCTCCGTCTCCGGCGGCGGCGGTGCGAGCTGTACATCCCTCCTCCCTCGTTCTCTTCCACTGCGCCGGCCGGAGGCACCTCATTTACACTCCTTTCCCGGACACAATTTCCTACCAGACCTCCTCCACCGTCTTCGGCCTCGGCGGAGGCGCTGCTGTTGTAGACGTCGCGGAAGAAGCCGTCGACGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.54

Weight (kDa)

9.05

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 174
AccI GTMKAC 2 cut(s) 342, 363
AccII CGCG 1 cut(s) 350
AciI CCGC 7 cut(s) 85, 172, 194, 197, 200, 324, 350
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 2 cut(s) 114, 213
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 192
AoxI GGCC 4 cut(s) 7, 102, 247, 316
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 2 cut(s) 245, 332
AspS9I GGNCC 2 cut(s) 98, 103
AsuC2I CCSGG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 319
BccI CCATC 1 cut(s) 6
BceAI ACGGC 1 cut(s) 344
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 44
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 3 cut(s) 195, 198, 333
BlsI GCNGC 3 cut(s) 196, 199, 334
Bme1390I CCNGG 2 cut(s) 44, 278
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 103
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 44, 278
BpiI GAAGAC 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 2 cut(s) 100, 245
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 4 cut(s) 52, 134, 164, 214
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 2 cut(s) 211, 292
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 319
BseYI CCCAGC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 350
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 4 cut(s) 9, 104, 249, 318
BshNI GGYRCC 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 250
BsiSI CCGG 5 cut(s) 101, 191, 246, 250, 278
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 192
BsmBI CGTCTC 1 cut(s) 192
BsnI GGCC 4 cut(s) 9, 104, 249, 318
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 4 cut(s) 73, 108, 146, 151
BspACI CCGC 7 cut(s) 85, 172, 194, 197, 200, 324, 350
BspANI GGCC 4 cut(s) 9, 104, 249, 318
BspCNI CTCAG 1 cut(s) 152
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 174
BsrFI RCCGGY 2 cut(s) 100, 245
BsrGI TGTACA 1 cut(s) 211
BssAI RCCGGY 2 cut(s) 100, 245
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 4 cut(s) 73, 108, 146, 151
BssNI GRCGYC 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 310, 368
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 345
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 207, 247
BstDEI CTNAG 1 cut(s) 139
BstF5I GGATG 4 cut(s) 52, 134, 164, 214
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 245, 332
BstKTI GATC 4 cut(s) 76, 111, 149, 154
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 73, 108, 146, 151
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 206, 356
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 42, 276
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 304
BstZI CGGCCG 1 cut(s) 247
BsuRI GGCC 4 cut(s) 9, 104, 249, 318
BtsCI GGATG 4 cut(s) 52, 134, 164, 214
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 147, 238
Cac8I GCNNGC 2 cut(s) 207, 247
CfoI GCGC 2 cut(s) 245, 332
Cfr10I RCCGGY 2 cut(s) 100, 245
Cfr13I GGNCC 2 cut(s) 98, 103
Csp6I GTAC 2 cut(s) 113, 212
CviJI RGCY 8 cut(s) 9, 56, 104, 125, 209, 249, 318, 359
CviKI_1 RGCY 8 cut(s) 9, 56, 104, 125, 209, 249, 318, 359
CviQI GTAC 2 cut(s) 113, 212
DdeI CTNAG 1 cut(s) 139
DpnI GATC 4 cut(s) 75, 110, 148, 153
DpnII GATC 4 cut(s) 73, 108, 146, 151
EaeI YGGCCR 1 cut(s) 247
EagI CGGCCG 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EciI GGCGGA 1 cut(s) 339
EclXI CGGCCG 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 98
Eco52I CGGCCG 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 192
FaiI YATR 1 cut(s) 83
FblI GTMKAC 2 cut(s) 342, 363
Fnu4HI GCNGC 3 cut(s) 195, 198, 333
FokI GGATG 4 cut(s) 59, 121, 151, 201
Fsp4HI GCNGC 3 cut(s) 195, 198, 333
FspBI CTAG 1 cut(s) 95
GlaI GCGC 2 cut(s) 244, 331
GluI GCNGC 3 cut(s) 195, 198, 333
GsaI CCCAGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 4 cut(s) 9, 104, 249, 318
HapII CCGG 5 cut(s) 101, 191, 246, 250, 278
HhaI GCGC 2 cut(s) 245, 332
Hin1I GRCGYC 1 cut(s) 345
Hin6I GCGC 2 cut(s) 243, 330
HinP1I GCGC 2 cut(s) 243, 330
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HpaII CCGG 5 cut(s) 101, 191, 246, 250, 278
Hpy166II GTNNAC 2 cut(s) 343, 364
Hpy188I TCNGA 1 cut(s) 151
Hpy8I GTNNAC 2 cut(s) 343, 364
Hpy99I CGWCG 3 cut(s) 350, 365, 368
HpyCH4III ACNGT 2 cut(s) 310, 368
HpyCH4IV ACGT 2 cut(s) 37, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 356
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 2 cut(s) 37, 345
Hsp92I GRCGYC 1 cut(s) 345
HspAI GCGC 2 cut(s) 243, 330
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Kzo9I GATC 4 cut(s) 73, 108, 146, 151
Lsp1109I GCAGC 1 cut(s) 319
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 37, 345
MalI GATC 4 cut(s) 75, 110, 148, 153
MbiI CCGCTC 1 cut(s) 174
MboI GATC 4 cut(s) 73, 108, 146, 151
MboII GAAGA 4 cut(s) 62, 226, 304, 365
MluCI AATT 2 cut(s) 88, 285
MroNI GCCGGC 1 cut(s) 245
MspI CCGG 5 cut(s) 101, 191, 246, 250, 278
MspR9I CCNGG 2 cut(s) 44, 278
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 206, 356
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 278
NdeII GATC 4 cut(s) 73, 108, 146, 151
NgoMIV GCCGGC 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 257
NmeAIII GCCGAG 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 3 cut(s) 196, 199, 334
Psp6I CCWGG 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 98, 103
RsaI GTAC 2 cut(s) 114, 213
RsaNI GTAC 2 cut(s) 113, 212
SalI GTCGAC 1 cut(s) 362
SatI GCNGC 3 cut(s) 195, 198, 333
Sau3AI GATC 4 cut(s) 73, 108, 146, 151
Sau96I GGNCC 2 cut(s) 98, 103
ScrFI CCNGG 2 cut(s) 44, 278
SetI ASST 6 cut(s) 40, 72, 211, 261, 302, 348
SgrDI CGTCGACG 1 cut(s) 362
SinI GGWCC 1 cut(s) 98
Sse9I AATT 2 cut(s) 88, 285
SsiI CCGC 7 cut(s) 85, 172, 194, 197, 200, 324, 350
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 42, 276
TaaI ACNGT 2 cut(s) 310, 368
TaiI ACGT 2 cut(s) 40, 348
TaqI TCGA 3 cut(s) 72, 154, 363
TasI AATT 2 cut(s) 88, 285
TatI WGTACW 1 cut(s) 211
TauI GCSGC 2 cut(s) 197, 200
TscAI CASTG 2 cut(s) 147, 245
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 2 cut(s) 147, 245
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 88
XmiI GTMKAC 2 cut(s) 342, 363
XspI CTAG 1 cut(s) 95
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.