Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861 |
| rosa_laevigata | RLG00000001228 RLG00000013425 RLG00000013426 |
| rosa_multiflora | Rmu_sc0002030.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770 |
| rosa_rugosa | Rorug06G0096800 Rorug06G0096900 |
| rosa_samantha | Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100 |
| rosa_wichuraiana | Rw6G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 303 |
| AccB1I | GGYRCC | 1 cut(s) | 210 |
| AccBSI | CCGCTC | 2 cut(s) | 129, 429 |
| AccI | GTMKAC | 1 cut(s) | 318 |
| AccII | CGCG | 1 cut(s) | 305 |
| AclWI | GGATC | 1 cut(s) | 686 |
| AcoI | YGGCCR | 1 cut(s) | 202 |
| AcsI | RAATTY | 2 cut(s) | 112, 965 |
| AcuI | CTGAAG | 2 cut(s) | 1158, 1215 |
| AcyI | GRCGYC | 1 cut(s) | 300 |
| AfaI | GTAC | 1 cut(s) | 168 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 207, 388, 1108 |
| AflIII | ACRYGT | 1 cut(s) | 645 |
| AgsI | TTSAA | 9 cut(s) | 88, 652, 688, 707, 770, 820, 902, 959, 982 |
| AjnI | CCWGG | 1 cut(s) | 66 |
| AluBI | AGCT | 6 cut(s) | 164, 657, 739, 1006, 1134, 1183 |
| AluI | AGCT | 6 cut(s) | 164, 657, 739, 1006, 1134, 1183 |
| Alw26I | GTCTC | 3 cut(s) | 147, 568, 868 |
| AlwI | GGATC | 1 cut(s) | 686 |
| Ama87I | CYCGRG | 1 cut(s) | 676 |
| AoxI | GGCC | 7 cut(s) | 46, 202, 271, 356, 762, 857, 1099 |
| ApeKI | GCWGC | 3 cut(s) | 287, 1089, 1217 |
| ApoI | RAATTY | 2 cut(s) | 112, 965 |
| AspLEI | GCGC | 2 cut(s) | 200, 287 |
| AspS9I | GGNCC | 4 cut(s) | 431, 762, 778, 1127 |
| AsuC2I | CCSGG | 1 cut(s) | 233 |
| AsuII | TTCGAA | 1 cut(s) | 1243 |
| AvaI | CYCGRG | 1 cut(s) | 676 |
| AvaII | GGWCC | 3 cut(s) | 431, 778, 1127 |
| BanI | GGYRCC | 1 cut(s) | 210 |
| BbsI | GAAGAC | 1 cut(s) | 259 |
| BbvCI | CCTCAGC | 1 cut(s) | 1020 |
| BbvI | GCAGC | 3 cut(s) | 274, 1101, 1204 |
| BccI | CCATC | 1 cut(s) | 490 |
| BceAI | ACGGC | 1 cut(s) | 299 |
| BciT130I | CCWGG | 1 cut(s) | 68 |
| BclI | TGATCA | 1 cut(s) | 697 |
| BcnI | CCSGG | 1 cut(s) | 233 |
| BcoDI | GTCTC | 3 cut(s) | 147, 568, 868 |
| BfaI | CTAG | 2 cut(s) | 1131, 1250 |
| BfmI | CTRYAG | 1 cut(s) | 1087 |
| BfoI | RGCGCY | 1 cut(s) | 288 |
| BisI | GCNGC | 5 cut(s) | 150, 153, 288, 1090, 1218 |
| BlsI | GCNGC | 5 cut(s) | 151, 154, 289, 1091, 1219 |
| Bme1390I | CCNGG | 2 cut(s) | 68, 233 |
| Bme18I | GGWCC | 3 cut(s) | 431, 778, 1127 |
| BmeT110I | CYCGRG | 1 cut(s) | 676 |
| BmgT120I | GGNCC | 4 cut(s) | 431, 762, 778, 1127 |
| BmiI | GGNNCC | 2 cut(s) | 212, 1191 |
| BmrFI | CCNGG | 2 cut(s) | 68, 233 |
| BmsI | GCATC | 2 cut(s) | 570, 1191 |
| BpiI | GAAGAC | 1 cut(s) | 259 |
| BpmI | CTGGAG | 3 cut(s) | 702, 782, 1205 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1020 |
| Bpu14I | TTCGAA | 1 cut(s) | 1243 |
| BpuEI | CTTGAG | 2 cut(s) | 941, 1022 |
| BpuMI | CCSGG | 1 cut(s) | 233 |
| BsaBI | GATNNNNATC | 2 cut(s) | 696, 1228 |
| BsaHI | GRCGYC | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 1 cut(s) | 274 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 239, 269, 567, 597 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 207, 388, 1108 |
| Bse118I | RCCGGY | 1 cut(s) | 200 |
| Bse1I | ACTGG | 3 cut(s) | 328, 749, 1057 |
| Bse8I | GATNNNNATC | 2 cut(s) | 696, 1228 |
| BseBI | CCWGG | 1 cut(s) | 68 |
| BseDI | CCNNGG | 1 cut(s) | 274 |
| BseGI | GGATG | 5 cut(s) | 76, 169, 506, 524, 666 |
| BseJI | GATNNNNATC | 2 cut(s) | 696, 1228 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 207, 388, 1108 |
| BseMII | CTCAG | 3 cut(s) | 545, 948, 1011 |
| BseNI | ACTGG | 3 cut(s) | 328, 749, 1057 |
| BseRI | GAGGAG | 4 cut(s) | 166, 247, 401, 404 |
| BseX3I | CGGCCG | 1 cut(s) | 202 |
| BseXI | GCAGC | 3 cut(s) | 274, 1101, 1204 |
| Bsh1236I | CGCG | 1 cut(s) | 305 |
| Bsh1285I | CGRYCG | 1 cut(s) | 205 |
| BshFI | GGCC | 7 cut(s) | 48, 204, 273, 358, 764, 859, 1101 |
| BshNI | GGYRCC | 1 cut(s) | 210 |
| BsiEI | CGRYCG | 1 cut(s) | 205 |
| BsiHKCI | CYCGRG | 1 cut(s) | 676 |
| BsiSI | CCGG | 4 cut(s) | 146, 201, 205, 233 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 207, 388, 1108 |
| BsmAI | GTCTC | 3 cut(s) | 147, 568, 868 |
| BsmBI | CGTCTC | 1 cut(s) | 147 |
| BsnI | GGCC | 7 cut(s) | 48, 204, 273, 358, 764, 859, 1101 |
| BsoBI | CYCGRG | 1 cut(s) | 676 |
| Bsp119I | TTCGAA | 1 cut(s) | 1243 |
| Bsp1407I | TGTACA | 1 cut(s) | 166 |
| Bsp143I | GATC | 6 cut(s) | 16, 97, 691, 697, 721, 823 |
| BspANI | GGCC | 7 cut(s) | 48, 204, 273, 358, 764, 859, 1101 |
| BspCNI | CTCAG | 3 cut(s) | 546, 947, 1012 |
| BspFNI | CGCG | 1 cut(s) | 305 |
| BspLI | GGNNCC | 2 cut(s) | 212, 1191 |
| BspMAI | CTGCAG | 1 cut(s) | 1091 |
| BspPI | GGATC | 1 cut(s) | 686 |
| BspT104I | TTCGAA | 1 cut(s) | 1243 |
| BspT107I | GGYRCC | 1 cut(s) | 210 |
| BsrBI | CCGCTC | 2 cut(s) | 129, 429 |
| BsrFI | RCCGGY | 1 cut(s) | 200 |
| BsrGI | TGTACA | 1 cut(s) | 166 |
| BsrI | ACTGG | 3 cut(s) | 328, 749, 1057 |
| BssAI | RCCGGY | 1 cut(s) | 200 |
| BssECI | CCNNGG | 1 cut(s) | 274 |
| BssMI | GATC | 6 cut(s) | 16, 97, 691, 697, 721, 823 |
| BssNI | GRCGYC | 1 cut(s) | 300 |
| Bst2UI | CCWGG | 1 cut(s) | 68 |
| Bst4CI | ACNGT | 2 cut(s) | 265, 879 |
| Bst6I | CTCTTC | 2 cut(s) | 194, 1191 |
| BstACI | GRCGYC | 1 cut(s) | 300 |
| BstAUI | TGTACA | 1 cut(s) | 166 |
| BstBI | TTCGAA | 1 cut(s) | 1243 |
| BstC8I | GCNNGC | 4 cut(s) | 162, 202, 1054, 1099 |
| BstDEI | CTNAG | 5 cut(s) | 8, 554, 934, 1020, 1272 |
| BstF5I | GGATG | 5 cut(s) | 76, 169, 506, 524, 666 |
| BstFNI | CGCG | 1 cut(s) | 305 |
| BstH2I | RGCGCY | 1 cut(s) | 288 |
| BstHHI | GCGC | 2 cut(s) | 200, 287 |
| BstKTI | GATC | 6 cut(s) | 19, 100, 694, 700, 724, 826 |
| BstMAI | GTCTC | 3 cut(s) | 147, 568, 868 |
| BstMBI | GATC | 6 cut(s) | 16, 97, 691, 697, 721, 823 |
| BstMCI | CGRYCG | 1 cut(s) | 205 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 161, 311, 745, 802, 1089, 1098 |
| BstNI | CCWGG | 1 cut(s) | 68 |
| BstNSI | RCATGY | 2 cut(s) | 649, 1056 |
| BstSCI | CCNGG | 2 cut(s) | 66, 231 |
| BstSFI | CTRYAG | 1 cut(s) | 1087 |
| BstUI | CGCG | 1 cut(s) | 305 |
| BstV1I | GCAGC | 3 cut(s) | 274, 1101, 1204 |
| BstV2I | GAAGAC | 1 cut(s) | 259 |
| BstX2I | RGATCY | 1 cut(s) | 691 |
| BstYI | RGATCY | 1 cut(s) | 691 |
| BstZI | CGGCCG | 1 cut(s) | 202 |
| BsuRI | GGCC | 7 cut(s) | 48, 204, 273, 358, 764, 859, 1101 |
| BtgZI | GCGATG | 1 cut(s) | 515 |
| BtsCI | GGATG | 5 cut(s) | 76, 169, 506, 524, 666 |
| BtsI | GCAGTG | 1 cut(s) | 193 |
| BtsIMutI | CAGTG | 2 cut(s) | 193, 321 |
| Cac8I | GCNNGC | 4 cut(s) | 162, 202, 1054, 1099 |
| CfoI | GCGC | 2 cut(s) | 200, 287 |
| Cfr10I | RCCGGY | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 4 cut(s) | 431, 762, 778, 1127 |
| CseI | GACGC | 1 cut(s) | 1072 |
| Csp6I | GTAC | 1 cut(s) | 167 |
| CviAII | CATG | 5 cut(s) | 401, 646, 793, 863, 1053 |
| CviQI | GTAC | 1 cut(s) | 167 |
| DdeI | CTNAG | 5 cut(s) | 8, 554, 934, 1020, 1272 |
| DpnI | GATC | 6 cut(s) | 18, 99, 693, 699, 723, 825 |
| DpnII | GATC | 6 cut(s) | 16, 97, 691, 697, 721, 823 |
| EaeI | YGGCCR | 1 cut(s) | 202 |
| EagI | CGGCCG | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 2 cut(s) | 194, 1191 |
| EarI | CTCTTC | 2 cut(s) | 194, 1191 |
| EciI | GGCGGA | 1 cut(s) | 294 |
| EclXI | CGGCCG | 1 cut(s) | 202 |
| Eco47I | GGWCC | 3 cut(s) | 431, 778, 1127 |
| Eco52I | CGGCCG | 1 cut(s) | 202 |
| Eco57I | CTGAAG | 2 cut(s) | 1158, 1215 |
| Eco88I | CYCGRG | 1 cut(s) | 676 |
| EcoRII | CCWGG | 1 cut(s) | 66 |
| Esp3I | CGTCTC | 1 cut(s) | 147 |
| FaeI | CATG | 5 cut(s) | 404, 649, 796, 866, 1056 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1245 |
| FatI | CATG | 5 cut(s) | 400, 645, 792, 862, 1052 |
| FauI | CCCGC | 1 cut(s) | 804 |
| FauNDI | CATATG | 1 cut(s) | 476 |
| FbaI | TGATCA | 1 cut(s) | 697 |
| FblI | GTMKAC | 1 cut(s) | 318 |
| Fnu4HI | GCNGC | 5 cut(s) | 150, 153, 288, 1090, 1218 |
| FokI | GGATG | 5 cut(s) | 83, 156, 493, 531, 673 |
| Fsp4HI | GCNGC | 5 cut(s) | 150, 153, 288, 1090, 1218 |
| FspBI | CTAG | 2 cut(s) | 1131, 1250 |
| GlaI | GCGC | 2 cut(s) | 199, 286 |
| GluI | GCNGC | 5 cut(s) | 150, 153, 288, 1090, 1218 |
| GsuI | CTGGAG | 3 cut(s) | 702, 782, 1205 |
| HaeII | RGCGCY | 1 cut(s) | 288 |
| HaeIII | GGCC | 7 cut(s) | 48, 204, 273, 358, 764, 859, 1101 |
| HapII | CCGG | 4 cut(s) | 146, 201, 205, 233 |
| HgaI | GACGC | 1 cut(s) | 1072 |
| HhaI | GCGC | 2 cut(s) | 200, 287 |
| Hin1I | GRCGYC | 1 cut(s) | 300 |
| Hin1II | CATG | 5 cut(s) | 404, 649, 796, 866, 1056 |
| Hin6I | GCGC | 2 cut(s) | 198, 285 |
| HinP1I | GCGC | 2 cut(s) | 198, 285 |
| HincII | GTYRAC | 2 cut(s) | 319, 524 |
| HindII | GTYRAC | 2 cut(s) | 319, 524 |
| HinfI | GANTC | 2 cut(s) | 12, 848 |
| HpaII | CCGG | 4 cut(s) | 146, 201, 205, 233 |
| Hpy166II | GTNNAC | 4 cut(s) | 298, 319, 464, 524 |
| Hpy188I | TCNGA | 6 cut(s) | 511, 555, 834, 937, 1138, 1234 |
| Hpy8I | GTNNAC | 4 cut(s) | 298, 319, 464, 524 |
| Hpy99I | CGWCG | 2 cut(s) | 305, 320 |
| HpyAV | CCTTC | 3 cut(s) | 399, 560, 849 |
| HpyCH4III | ACNGT | 2 cut(s) | 265, 879 |
| HpyCH4IV | ACGT | 4 cut(s) | 61, 300, 954, 1065 |
| HpyCH4V | TGCA | 5 cut(s) | 452, 642, 1089, 1153, 1220 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 161, 311, 745, 802, 1089, 1098 |
| HpyF3I | CTNAG | 5 cut(s) | 8, 554, 934, 1020, 1272 |
| HpySE526I | ACGT | 4 cut(s) | 61, 300, 954, 1065 |
| Hsp92I | GRCGYC | 1 cut(s) | 300 |
| Hsp92II | CATG | 5 cut(s) | 404, 649, 796, 866, 1056 |
| HspAI | GCGC | 2 cut(s) | 198, 285 |
| KroI | GCCGGC | 1 cut(s) | 200 |
| KroNI | GCCGGC | 1 cut(s) | 202 |
| Ksp22I | TGATCA | 1 cut(s) | 697 |
| Kzo9I | GATC | 6 cut(s) | 16, 97, 691, 697, 721, 823 |
| LmnI | GCTCC | 3 cut(s) | 426, 588, 801 |
| Lsp1109I | GCAGC | 3 cut(s) | 274, 1101, 1204 |
| LweI | GCATC | 2 cut(s) | 570, 1191 |
| MaeI | CTAG | 2 cut(s) | 1131, 1250 |
| MaeII | ACGT | 4 cut(s) | 61, 300, 954, 1065 |
| MaeIII | GTNAC | 4 cut(s) | 53, 479, 879, 993 |
| MalI | GATC | 6 cut(s) | 18, 99, 693, 699, 723, 825 |
| MbiI | CCGCTC | 2 cut(s) | 129, 429 |
| MboI | GATC | 6 cut(s) | 16, 97, 691, 697, 721, 823 |
| MflI | RGATCY | 1 cut(s) | 691 |
| MluCI | AATT | 6 cut(s) | 112, 240, 538, 815, 965, 1154 |
| MlyI | GAGTC | 1 cut(s) | 6 |
| MmeI | TCCRAC | 1 cut(s) | 610 |
| MroNI | GCCGGC | 1 cut(s) | 200 |
| MseI | TTAA | 1 cut(s) | 1263 |
| MspI | CCGG | 4 cut(s) | 146, 201, 205, 233 |
| MspR9I | CCNGG | 2 cut(s) | 68, 233 |
| MvaI | CCWGG | 1 cut(s) | 68 |
| MvnI | CGCG | 1 cut(s) | 305 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 161, 311, 745, 802, 1089, 1098 |
| NaeI | GCCGGC | 1 cut(s) | 202 |
| NciI | CCSGG | 1 cut(s) | 233 |
| NdeI | CATATG | 1 cut(s) | 476 |
| NdeII | GATC | 6 cut(s) | 16, 97, 691, 697, 721, 823 |
| NgoMIV | GCCGGC | 1 cut(s) | 200 |
| NlaIII | CATG | 5 cut(s) | 404, 649, 796, 866, 1056 |
| NlaIV | GGNNCC | 2 cut(s) | 212, 1191 |
| NmeAIII | GCCGAG | 1 cut(s) | 255 |
| NmuCI | GTSAC | 3 cut(s) | 53, 479, 879 |
| NspI | RCATGY | 2 cut(s) | 649, 1056 |
| NspV | TTCGAA | 1 cut(s) | 1243 |
| PaeI | GCATGC | 1 cut(s) | 1056 |
| PciI | ACATGT | 1 cut(s) | 645 |
| PdiI | GCCGGC | 1 cut(s) | 202 |
| PfeI | GAWTC | 1 cut(s) | 848 |
| PfoI | TCCNGGA | 1 cut(s) | 231 |
| PkrI | GCNGC | 5 cut(s) | 151, 154, 289, 1091, 1219 |
| PleI | GAGTC | 1 cut(s) | 6 |
| PpsI | GAGTC | 1 cut(s) | 6 |
| PscI | ACATGT | 1 cut(s) | 645 |
| Psp6I | CCWGG | 1 cut(s) | 66 |
| PspGI | CCWGG | 1 cut(s) | 66 |
| PspN4I | GGNNCC | 2 cut(s) | 212, 1191 |
| PspPI | GGNCC | 4 cut(s) | 431, 762, 778, 1127 |
| PstI | CTGCAG | 1 cut(s) | 1091 |
| PsuI | RGATCY | 1 cut(s) | 691 |
| RsaI | GTAC | 1 cut(s) | 168 |
| RsaNI | GTAC | 1 cut(s) | 167 |
| SalI | GTCGAC | 1 cut(s) | 317 |
| SaqAI | TTAA | 1 cut(s) | 1263 |
| SatI | GCNGC | 5 cut(s) | 150, 153, 288, 1090, 1218 |
| Sau3AI | GATC | 6 cut(s) | 16, 97, 691, 697, 721, 823 |
| Sau96I | GGNCC | 4 cut(s) | 431, 762, 778, 1127 |
| SchI | GAGTC | 1 cut(s) | 6 |
| ScrFI | CCNGG | 2 cut(s) | 68, 233 |
| SfaNI | GCATC | 2 cut(s) | 570, 1191 |
| SfcI | CTRYAG | 1 cut(s) | 1087 |
| SfuI | TTCGAA | 1 cut(s) | 1243 |
| SinI | GGWCC | 3 cut(s) | 431, 778, 1127 |
| SmlI | CTYRAG | 2 cut(s) | 920, 1001 |
| SmoI | CTYRAG | 2 cut(s) | 920, 1001 |
| SphI | GCATGC | 1 cut(s) | 1056 |
| Sse9I | AATT | 6 cut(s) | 112, 240, 538, 815, 965, 1154 |
| SspMI | CTAG | 2 cut(s) | 1131, 1250 |
| StyD4I | CCNGG | 2 cut(s) | 66, 231 |
| TaaI | ACNGT | 2 cut(s) | 265, 879 |
| TaiI | ACGT | 4 cut(s) | 64, 303, 957, 1068 |
| TaqI | TCGA | 7 cut(s) | 15, 96, 318, 375, 528, 783, 1243 |
| TasI | AATT | 6 cut(s) | 112, 240, 538, 815, 965, 1154 |
| TatI | WGTACW | 1 cut(s) | 166 |
| TauI | GCSGC | 2 cut(s) | 152, 155 |
| TfiI | GAWTC | 1 cut(s) | 848 |
| Tru1I | TTAA | 1 cut(s) | 1263 |
| Tru9I | TTAA | 1 cut(s) | 1263 |
| TscAI | CASTG | 2 cut(s) | 200, 328 |
| TseFI | GTSAC | 3 cut(s) | 53, 479, 879 |
| TseI | GCWGC | 3 cut(s) | 287, 1089, 1217 |
| Tsp45I | GTSAC | 3 cut(s) | 53, 479, 879 |
| TspDTI | ATGAA | 4 cut(s) | 87, 926, 958, 1184 |
| TspGWI | ACGGA | 1 cut(s) | 129 |
| TspRI | CASTG | 2 cut(s) | 200, 328 |
| VpaK11BI | GGWCC | 3 cut(s) | 431, 778, 1127 |
| XapI | RAATTY | 2 cut(s) | 112, 965 |
| XceI | RCATGY | 2 cut(s) | 649, 1056 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 772 |
| XmiI | GTMKAC | 1 cut(s) | 318 |
| XspI | CTAG | 2 cut(s) | 1131, 1250 |
| ZraI | GACGTC | 1 cut(s) | 301 |