Rh6CG215100

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006431
Physical Location & Seq
Reverse (-)
35768203 .. 35769327
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG215100.1

Sequence Viewer

Length: 765 bp
ATGAATATCAATGAGCTGGAGGAACCTGAAGAGATGCCATTGGAGATTGTTGCAAGATTTACGTCCGATATTTTTCGAACACCGGAAGACGTGCTTAAAGGAGCAAGGTTCTTAGCAGCTATAGAGATTAGTTTGGAGCCTATTATCAGGCAGTATATGCGAAGAAAATACTTTGACGCCCTTTCATTACGTACAAGGCTATCAAGGAAGACAATGTGGCCTAAAGTAGGAAAGAGATTAAGTAAAATTAAGGACGAAGAATTGTTTCGTATCCAGAAGGCTAAAGATAATGGTACTCTTGATTTCACCATAAAGCTGCTGGATGATGATGTAGAAGAGTTGTTAATGGACTTGAAGAGGTTCTATCACGTTAATGATGCTAGTATATCTGTGGGACCTTGGCATGAAGAGCGGGAGAAGATACTTGAGAATGCCTTCTTTAGATACCTTCTGGCTTCAATGAAGCATGAAGCCCGATCCTTGTGCAGAAATAAAGTAAGAAGCTGGTTGCGTTTTGAATATGGAGAAGCTTTGTGGAAACGAGTTTCTGTGATACCAAATCGATGGAAGCAAAGTCATAGCTCAGAAGATCATGTGGTACCCAAGGTCATTGCTTGTTGTTTGGGACCTGGGATTACCGACACCACTTTTGTTGCGATAGATTCATCTGGGGATATGCTAAACAAGCTCTGCATACATTATCTCACCAATCTCTCTCATGATAGTGTTGTTTTGAAGCAACAAGATCGAGACGATGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

254

Amino Acids

29.74

Weight (kDa)

7.06

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 598
AccB1I GGYRCC 1 cut(s) 598
AccBSI CCGCTC 1 cut(s) 412
AciI CCGC 1 cut(s) 412
AclWI GGATC 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 3 cut(s) 193, 295, 600
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 4 cut(s) 355, 459, 518, 736
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 7 cut(s) 16, 119, 316, 504, 530, 582, 688
AluI AGCT 7 cut(s) 16, 119, 316, 504, 530, 582, 688
Alw26I GTCTC 1 cut(s) 744
AlwI GGATC 1 cut(s) 471
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 116, 316
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
Asp700I GAANNNNTTC 3 cut(s) 264, 359, 434
Asp718I GGTACC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 395, 626
AsuHPI GGTGA 2 cut(s) 298, 697
AsuII TTCGAA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 395, 626
BanI GGYRCC 1 cut(s) 598
BbsI GAAGAC 2 cut(s) 93, 215
BbvI GCAGC 2 cut(s) 128, 303
BccI CCATC 1 cut(s) 558
BcgI CGANNNNNNTGC 4 cut(s) 465, 499, 728, 762
BciT130I CCWGG 1 cut(s) 630
BciVI GTATCC 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 744
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 120
BfuI GTATCC 1 cut(s) 281
BisI GCNGC 2 cut(s) 117, 317
BlsI GCNGC 2 cut(s) 118, 318
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 2 cut(s) 395, 626
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 395, 626
BmiI GGNNCC 5 cut(s) 24, 138, 396, 600, 627
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 24, 367
BpiI GAAGAC 2 cut(s) 93, 215
BpmI CTGGAG 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 446
Bsa29I ATCGAT 1 cut(s) 562
BsaAI YACGTR 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 398, 603, 629
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 609
BseBI CCWGG 1 cut(s) 630
BseCI ATCGAT 1 cut(s) 562
BseDI CCNNGG 3 cut(s) 398, 603, 629
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 128, 303
BsgI GTGCAG 1 cut(s) 505
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 598
BshVI ATCGAT 1 cut(s) 562
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 408, 639
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 744
BsmBI CGTCTC 1 cut(s) 744
BsmFI GGGAC 2 cut(s) 408, 639
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 76
Bsp143I GATC 3 cut(s) 476, 589, 745
BspACI CCGC 1 cut(s) 412
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 596
BspDI ATCGAT 1 cut(s) 562
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 5 cut(s) 24, 138, 396, 600, 627
BspPI GGATC 1 cut(s) 471
BspQI GCTCTTC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 609
BssECI CCNNGG 3 cut(s) 398, 603, 629
BssMI GATC 3 cut(s) 476, 589, 745
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 398, 603
Bst2UI CCWGG 1 cut(s) 630
Bst6I CTCTTC 4 cut(s) 24, 330, 350, 402
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 112, 583
BstENI CCTNNNNNAGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 3 cut(s) 479, 592, 748
BstMAI GTCTC 1 cut(s) 744
BstMBI GATC 3 cut(s) 476, 589, 745
BstMWI GCNNNNNNNGC 3 cut(s) 157, 409, 685
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 120
BstSNI TACGTA 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 128, 303
BstV2I GAAGAC 2 cut(s) 93, 215
BstXI CCANNNNNNTGG 1 cut(s) 564
Bsu15I ATCGAT 1 cut(s) 562
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 220
BsuTUI ATCGAT 1 cut(s) 562
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 328
CciI TCATGA 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 395, 626
ClaI ATCGAT 1 cut(s) 562
CseI GACGC 1 cut(s) 185
Csp6I GTAC 3 cut(s) 192, 294, 599
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 4 cut(s) 404, 467, 593, 719
CviQI GTAC 3 cut(s) 192, 294, 599
DdeI CTNAG 2 cut(s) 112, 583
DpnI GATC 3 cut(s) 478, 591, 747
DpnII GATC 3 cut(s) 476, 589, 745
Eam1104I CTCTTC 4 cut(s) 24, 330, 350, 402
EarI CTCTTC 4 cut(s) 24, 330, 350, 402
Eco105I TACGTA 1 cut(s) 191
Eco130I CCWWGG 2 cut(s) 398, 603
Eco47I GGWCC 2 cut(s) 395, 626
Eco57I CTGAAG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoO109I RGGNCCY 2 cut(s) 395, 626
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 2 cut(s) 398, 603
ErhI CCWWGG 2 cut(s) 398, 603
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 4 cut(s) 407, 470, 596, 722
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 2 cut(s) 408, 639
FatI CATG 4 cut(s) 403, 466, 592, 718
FauI CCCGC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 117, 317
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 117, 317
FspBI CTAG 1 cut(s) 381
GluI GCNGC 2 cut(s) 117, 317
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 407, 470, 596, 722
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 1 cut(s) 662
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 298, 697
Hpy188I TCNGA 2 cut(s) 67, 586
Hpy188III TCNNGA 4 cut(s) 274, 299, 719, 749
HpyAV CCTTC 3 cut(s) 271, 445, 458
HpyCH4IV ACGT 4 cut(s) 62, 90, 190, 369
HpyCH4V TGCA 3 cut(s) 53, 486, 693
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 409, 685
HpyF3I CTNAG 2 cut(s) 112, 583
HpySE526I ACGT 4 cut(s) 62, 90, 190, 369
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 407, 470, 596, 722
KpnI GGTACC 1 cut(s) 602
Kzo9I GATC 3 cut(s) 476, 589, 745
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 101, 136
Lsp1109I GCAGC 2 cut(s) 128, 303
LweI GCATC 2 cut(s) 24, 367
MaeI CTAG 1 cut(s) 381
MaeII ACGT 4 cut(s) 62, 90, 190, 369
MalI GATC 3 cut(s) 478, 591, 747
MbiI CCGCTC 1 cut(s) 412
MboI GATC 3 cut(s) 476, 589, 745
MluCI AATT 2 cut(s) 246, 260
MnlI CCTC 2 cut(s) 13, 351
MroXI GAANNNNTTC 3 cut(s) 264, 359, 434
MseI TTAA 5 cut(s) 96, 239, 249, 344, 372
MslI CAYNNNNRTG 2 cut(s) 372, 723
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 1 cut(s) 630
MwoI GCNNNNNNNGC 3 cut(s) 157, 409, 685
NdeII GATC 3 cut(s) 476, 589, 745
NlaIII CATG 4 cut(s) 407, 470, 596, 722
NlaIV GGNNCC 5 cut(s) 24, 138, 396, 600, 627
NspV TTCGAA 1 cut(s) 76
PagI TCATGA 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 402
PctI GAATGC 1 cut(s) 436
PdmI GAANNNNTTC 3 cut(s) 264, 359, 434
PfeI GAWTC 1 cut(s) 662
PkrI GCNGC 2 cut(s) 118, 318
Ppu21I YACGTR 1 cut(s) 191
PpuMI RGGWCCY 2 cut(s) 395, 626
Psp5II RGGWCCY 2 cut(s) 395, 626
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 5 cut(s) 24, 138, 396, 600, 627
PspPI GGNCC 2 cut(s) 395, 626
PspPPI RGGWCCY 2 cut(s) 395, 626
RsaI GTAC 3 cut(s) 193, 295, 600
RsaNI GTAC 3 cut(s) 192, 294, 599
RseI CAYNNNNRTG 2 cut(s) 372, 723
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 5 cut(s) 96, 239, 249, 344, 372
SatI GCNGC 2 cut(s) 117, 317
Sau3AI GATC 3 cut(s) 476, 589, 745
Sau96I GGNCC 2 cut(s) 395, 626
ScrFI CCNGG 1 cut(s) 630
SfaNI GCATC 2 cut(s) 24, 367
SfcI CTRYAG 1 cut(s) 120
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 2 cut(s) 395, 626
SmiMI CAYNNNNRTG 2 cut(s) 372, 723
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
SnaBI TACGTA 1 cut(s) 191
Sse9I AATT 2 cut(s) 246, 260
SsiI CCGC 1 cut(s) 412
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 2 cut(s) 398, 603
TaiI ACGT 4 cut(s) 65, 93, 193, 372
TaqI TCGA 3 cut(s) 76, 562, 748
TasI AATT 2 cut(s) 246, 260
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 5 cut(s) 96, 239, 249, 344, 372
Tru9I TTAA 5 cut(s) 96, 239, 249, 344, 372
TseI GCWGC 2 cut(s) 116, 316
TspDTI ATGAA 6 cut(s) 17, 174, 420, 476, 483, 654
VpaK11BI GGWCC 2 cut(s) 395, 626
XagI CCTNNNNNAGG 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmnI GAANNNNTTC 3 cut(s) 264, 359, 434
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.