Rroxscaffold_3G00224040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006431
Physical Location & Seq
Forward (+)
7221646 .. 7224415
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224040.1

Sequence Viewer

Length: 357 bp
ATGGGGTGCTTATCCGGGCCATTGCCTAGTCGTGGGCCTGCTCCCGGCGGTCAAGTTTGGGCTGTTGCATCTCCTTTTCTGTACATCCCTCCTCCCTCGTTCTCTTCCACTGCGCCGGCCGAGGCACTTCATTTACACTCCTTTTCGCTCTCGCCGGACACAATTTCCTACCGGACCTCCTCCACCGTCTTCGGCCTCGGCGGAGGCGCTGCTGTTGTAGACGTCGCGGAAGAAGCCGTCGACGGTCATCGAGCCCAACTAGATCGGCGTGGGATTGGCCGTGTTAATGTAGCTGGTGGTGGTGGTGTGGTGTTTCAGGTTGAAAGGCAAGAAATCAAAGACATCGAAGCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.18

Weight (kDa)

5.84

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccI GTMKAC 2 cut(s) 219, 240
AccII CGCG 1 cut(s) 227
AciI CCGC 3 cut(s) 48, 201, 227
AcoI YGGCCR 2 cut(s) 117, 277
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 32, 44
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AoxI GGCC 5 cut(s) 17, 35, 117, 193, 277
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 2 cut(s) 115, 209
AspS9I GGNCC 3 cut(s) 17, 35, 174
AsuC2I CCSGG 2 cut(s) 16, 45
AvaII GGWCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 2 cut(s) 221, 264
BcnI CCSGG 2 cut(s) 16, 45
BfaI CTAG 2 cut(s) 27, 260
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 16, 45
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 3 cut(s) 17, 35, 174
BmrFI CCNGG 2 cut(s) 16, 45
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 181
BpuMI CCSGG 2 cut(s) 16, 45
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 120, 196
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 44
Bse118I RCCGGY 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 120, 196
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 32, 44
BseMI GCAATG 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 81, 169
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 5 cut(s) 19, 37, 119, 195, 279
BsiEI CGRYCG 1 cut(s) 120
BsiSI CCGG 5 cut(s) 15, 45, 116, 155, 172
BslI CCNNNNNNNGG 2 cut(s) 32, 44
BsnI GGCC 5 cut(s) 19, 37, 119, 195, 279
Bsp1286I GDGCHC 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 3 cut(s) 48, 201, 227
BspANI GGCC 5 cut(s) 19, 37, 119, 195, 279
BspFNI CGCG 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 120, 196
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 187, 245
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 39, 117
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 115, 209
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 14, 43
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 181
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 5 cut(s) 19, 37, 119, 195, 279
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 39, 117
CfoI GCGC 2 cut(s) 115, 209
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 3 cut(s) 17, 35, 174
Csp6I GTAC 1 cut(s) 82
CviQI GTAC 1 cut(s) 82
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 2 cut(s) 117, 277
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 174
Eco52I CGGCCG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 256
FblI GTMKAC 2 cut(s) 219, 240
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 27, 260
GlaI GCGC 2 cut(s) 114, 208
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 5 cut(s) 19, 37, 119, 195, 279
HapII CCGG 5 cut(s) 15, 45, 116, 155, 172
HhaI GCGC 2 cut(s) 115, 209
Hin1I GRCGYC 1 cut(s) 222
Hin6I GCGC 2 cut(s) 113, 207
HinP1I GCGC 2 cut(s) 113, 207
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HpaII CCGG 5 cut(s) 15, 45, 116, 155, 172
Hpy166II GTNNAC 2 cut(s) 220, 241
Hpy8I GTNNAC 2 cut(s) 220, 241
Hpy99I CGWCG 3 cut(s) 227, 242, 245
HpyCH4III ACNGT 2 cut(s) 187, 245
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
HspAI GCGC 2 cut(s) 113, 207
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 8 cut(s) 28, 51, 58, 129, 168, 185, 279, 302
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 77
MaeI CTAG 2 cut(s) 27, 260
MaeII ACGT 1 cut(s) 222
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 3 cut(s) 96, 181, 242
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 1 cut(s) 162
MnlI CCTC 8 cut(s) 99, 102, 106, 115, 187, 190, 197, 206
MroNI GCCGGC 1 cut(s) 115
MseI TTAA 1 cut(s) 285
MspI CCGG 5 cut(s) 15, 45, 116, 155, 172
MspR9I CCNGG 2 cut(s) 16, 45
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 233
NaeI GCCGGC 1 cut(s) 117
NciI CCSGG 2 cut(s) 16, 45
NdeII GATC 1 cut(s) 262
NgoMIV GCCGGC 1 cut(s) 115
NmeAIII GCCGAG 2 cut(s) 145, 177
PdiI GCCGGC 1 cut(s) 117
PkrI GCNGC 1 cut(s) 211
PspPI GGNCC 3 cut(s) 17, 35, 174
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 3 cut(s) 17, 35, 174
ScrFI CCNGG 2 cut(s) 16, 45
SduI GDGCHC 1 cut(s) 256
SetI ASST 4 cut(s) 179, 225, 295, 321
SfaNI GCATC 1 cut(s) 77
SgrDI CGTCGACG 1 cut(s) 239
SinI GGWCC 1 cut(s) 174
Sse9I AATT 1 cut(s) 162
SsiI CCGC 3 cut(s) 48, 201, 227
SspMI CTAG 2 cut(s) 27, 260
StyD4I CCNGG 2 cut(s) 14, 43
TaaI ACNGT 2 cut(s) 187, 245
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 240, 250, 345
TasI AATT 1 cut(s) 162
TatI WGTACW 1 cut(s) 81
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 174
XmiI GTMKAC 2 cut(s) 219, 240
XspI CTAG 2 cut(s) 27, 260
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.