Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006431

Physical Location & Seq

Genomic Coordinates Forward (+)

31355664 .. 31356585

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013426

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTGTTACCTCTTGAGCTACATAATGTTGCTGAGGAAGATATTTGGAAGCAAGTGTGGGAAGCATGCCAGTATAAGGTGGAATCAGTTTATAGCATCTGCAGCAAGGCTGGCCTGTGGAGGGTTGCATGCAACTTCGGTCCTAGCTCTGAAGAATTTGGGTTGCAATTATCAGGGGAAATGGAACATATCACTGAAGAATGAGATGCCACTGGAGATTGCTGCAAGATTTACATCCGATATTTTACGAACGCCGGAACACGTGCTTAAAGGAGCAAGGCTGTTAGCAGCTGTTGAGATTAGTTTGGAGCCTATTATCAGGCAGTATATGCGAAGAAAATACTTTGACGCCCTTGTATTACGTGCAAGGCTATCAAGGAAGACAATGTGGCCTAAAGTAGGAAAGAGATTTAGTAAATTCAAGGACGAAGAATTGTTTCGTATTCAGAAGGCTAAAGATAATGGTACTCTTGATATCACCATAAAGCTGCTGGATGATGATGTAGAAGACTTGTATGATGATGATGATGATACAAATAACAACAATGATTTGACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

187

Amino Acids

21.37

Weight (kDa)

9.26

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006431)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861
rosa_laevigata	RLG00000001228 RLG00000013425 RLG00000013426
rosa_multiflora	Rmu_sc0002030.1_g000010
rosa_roxburghii	Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770
rosa_rugosa	Rorug06G0096800 Rorug06G0096900
rosa_samantha	Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100
rosa_wichuraiana	Rw6G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	154, 416
AcuI	CTGAAG	2 cut(s)	170, 215
AcvI	CACGTG	1 cut(s)	262
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	3 cut(s)	75, 120, 398
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	421
AluBI	AGCT	4 cut(s)	18, 146, 290, 487
AluI	AGCT	4 cut(s)	18, 146, 290, 487
AoxI	GGCC	2 cut(s)	111, 389
ApeKI	GCWGC	4 cut(s)	101, 221, 287, 487
ApoI	RAATTY	2 cut(s)	154, 416
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	139
BbrPI	CACGTG	1 cut(s)	262
BbsI	GAAGAC	2 cut(s)	386, 513
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	113, 208, 299, 474
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	4 cut(s)	102, 222, 288, 488
BlsI	GCNGC	4 cut(s)	103, 223, 289, 489
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	2 cut(s)	104, 195
BpiI	GAAGAC	2 cut(s)	386, 513
BpmI	CTGGAG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	34
BsaAI	YACGTR	2 cut(s)	262, 362
BsaBI	GATNNNNATC	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 120, 398
Bse1I	ACTGG	2 cut(s)	69, 216
Bse8I	GATNNNNATC	1 cut(s)	232
BseGI	GGATG	2 cut(s)	233, 499
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	75, 120, 398
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	69, 216
BseXI	GCAGC	4 cut(s)	113, 208, 299, 474
BshFI	GGCC	2 cut(s)	113, 391
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	75, 120, 398
BsnI	GGCC	2 cut(s)	113, 391
BspANI	GGCC	2 cut(s)	113, 391
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	69, 216
BssNI	GRCGYC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstBAI	YACGTR	2 cut(s)	262, 362
BstC8I	GCNNGC	3 cut(s)	66, 111, 129
BstDEI	CTNAG	1 cut(s)	32
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	233, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 110, 328
BstNSI	RCATGY	2 cut(s)	68, 131
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	113, 208, 299, 474
BstV2I	GAAGAC	2 cut(s)	386, 513
BsuRI	GGCC	2 cut(s)	113, 391
BtsCI	GGATG	2 cut(s)	233, 499
BtsIMutI	CAGTG	2 cut(s)	191, 209
Cac8I	GCNNGC	3 cut(s)	66, 111, 129
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	2 cut(s)	65, 128
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	170, 215
Eco72I	CACGTG	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	475
FaeI	CATG	2 cut(s)	68, 131
FatI	CATG	2 cut(s)	64, 127
Fnu4HI	GCNGC	4 cut(s)	102, 222, 288, 488
FokI	GGATG	2 cut(s)	220, 506
Fsp4HI	GCNGC	4 cut(s)	102, 222, 288, 488
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	4 cut(s)	102, 222, 288, 488
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	113, 391
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	68, 131
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	469
Hpy188I	TCNGA	3 cut(s)	150, 238, 447
Hpy188III	TCNNGA	2 cut(s)	13, 470
HpyAV	CCTTC	1 cut(s)	442
HpyCH4IV	ACGT	2 cut(s)	261, 361
HpyCH4V	TGCA	6 cut(s)	101, 127, 131, 165, 224, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 110, 328
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	2 cut(s)	261, 361
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	68, 131
LmnI	GCTCC	2 cut(s)	272, 307
LpnPI	CCDG	8 cut(s)	82, 95, 127, 158, 197, 267, 304, 476
Lsp1109I	GCAGC	4 cut(s)	113, 208, 299, 474
LweI	GCATC	2 cut(s)	104, 195
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	2 cut(s)	261, 361
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	7 cut(s)	49, 163, 208, 345, 391, 440, 518
MluCI	AATT	4 cut(s)	154, 166, 416, 431
MnlI	CCTC	3 cut(s)	20, 27, 113
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	101, 110, 328
NlaIII	CATG	2 cut(s)	68, 131
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	2 cut(s)	68, 131
PaeI	GCATGC	2 cut(s)	68, 131
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	103, 223, 289, 489
PmaCI	CACGTG	1 cut(s)	262
PmlI	CACGTG	1 cut(s)	262
Ppu21I	YACGTR	2 cut(s)	262, 362
PspCI	CACGTG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	4 cut(s)	102, 222, 288, 488
Sau96I	GGNCC	1 cut(s)	139
SetI	ASST	8 cut(s)	12, 20, 80, 148, 264, 292, 364, 489
SfaNI	GCATC	2 cut(s)	104, 195
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SphI	GCATGC	2 cut(s)	68, 131
Sse9I	AATT	4 cut(s)	154, 166, 416, 431
SspMI	CTAG	1 cut(s)	143
TaiI	ACGT	2 cut(s)	264, 364
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	4 cut(s)	154, 166, 416, 431
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	198, 216
TseI	GCWGC	4 cut(s)	101, 221, 287, 487
TspRI	CASTG	2 cut(s)	198, 216
VpaK11BI	GGWCC	1 cut(s)	139
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	2 cut(s)	154, 416
XceI	RCATGY	2 cut(s)	68, 131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.