Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006431

Physical Location & Seq

Genomic Coordinates Forward (+)

12368399 .. 12371326

Gene Structure 2928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTACCTCACAGGATAACATATGAGACCTCCTCCACAGTCTTCGGCCTCCGCGGAGGTACTGCTGTTGTAGATGTCACGGAAGAAGCCGTCGACGGTCATCGAGCCCAGCTAGATTGGTGTGGGATTGGTCGTGTTAATGTTGCTAGTGGTGGTGGTGTGGTGTTTTGGGTTGAAAGGCAAGAAATCAAAGCATTGAAGCCCAATGAGGAGGAAAAGTTGAGTACGGTTGAAGAGTTCTCGTCGGAGCGATCGGAGAAGAAGACCTCTGTTCATCTTTCTTTGGCAATCCGACCCGATTTTCAACCCCATCGGATCCTCCACCTTTCGCCAGCACCTGTGACACACCGCAATGCTCAGCTCTCCAAGTCTTTACCTGCCAAGTCCCTCTACCAGGTCTCTTACGGTGACGGCTCATACACCGTCGATGACTACATGACTGAAAAGGAGTCGTTTAGGAACTCCAGTGCGATCAACACCGTCGCGTTGGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0010033 GO:0010035 GO:0012505 GO:0016787 GO:0019538 GO:0030163 GO:0033993 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070001 GO:0070011 GO:0071704 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

166

Amino Acids

18.26

Weight (kDa)

6.07

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006431)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861
rosa_laevigata	RLG00000001228 RLG00000013425 RLG00000013426
rosa_multiflora	Rmu_sc0002030.1_g000010
rosa_roxburghii	Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770
rosa_rugosa	Rorug06G0096800 Rorug06G0096900
rosa_samantha	Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100
rosa_wichuraiana	Rw6G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	2 cut(s)	54, 485
AciI	CCGC	3 cut(s)	52, 54, 349
AclWI	GGATC	2 cut(s)	310, 323
AfaI	GTAC	2 cut(s)	61, 226
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	176, 199, 233, 305
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	112, 361
AluI	AGCT	2 cut(s)	112, 361
Alw26I	GTCTC	2 cut(s)	20, 403
AlwI	GGATC	2 cut(s)	310, 323
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BamHI	GGATCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	2 cut(s)	34, 269
BccI	CCATC	1 cut(s)	318
BceAI	ACGGC	2 cut(s)	74, 427
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	20, 403
BfaI	CTAG	2 cut(s)	113, 147
BfuAI	ACCTGC	1 cut(s)	385
BlpI	GCTNAGC	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	395
BpiI	GAAGAC	2 cut(s)	34, 269
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	1 cut(s)	448
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaI	GGTCTC	2 cut(s)	20, 403
BsaJI	CCNNGG	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	465
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	465
BseRI	GAGGAG	2 cut(s)	22, 224
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	2 cut(s)	54, 485
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	20, 403
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	2 cut(s)	20, 403
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	251, 315, 471
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	3 cut(s)	52, 54, 349
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	2 cut(s)	54, 485
BspLI	GGNNCC	1 cut(s)	317
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	310, 323
BspTNI	GGTCTC	2 cut(s)	20, 403
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	251, 315, 471
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	6 cut(s)	40, 98, 229, 407, 424, 481
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	52
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstFNI	CGCG	2 cut(s)	54, 485
BstKTI	GATC	3 cut(s)	254, 318, 474
BstMAI	GTCTC	2 cut(s)	20, 403
BstMBI	GATC	3 cut(s)	251, 315, 471
BstMCI	CGRYCG	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstUI	CGCG	2 cut(s)	54, 485
BstV2I	GAAGAC	2 cut(s)	34, 269
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	472
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	338
Cfr42I	CCGCGG	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	60, 225
CviAII	CATG	1 cut(s)	436
CviJI	RGCY	7 cut(s)	48, 89, 107, 112, 202, 361, 414
CviKI_1	RGCY	7 cut(s)	48, 89, 107, 112, 202, 361, 414
CviQI	GTAC	2 cut(s)	60, 225
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	3 cut(s)	253, 317, 473
DpnII	GATC	3 cut(s)	251, 315, 471
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	2 cut(s)	20, 403
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	1 cut(s)	439
FaiI	YATR	4 cut(s)	22, 24, 418, 437
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	1 cut(s)	435
FauNDI	CATATG	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	109
FspBI	CTAG	2 cut(s)	113, 147
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	439
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	449
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	247, 256, 293, 315
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	5 cut(s)	95, 98, 247, 428, 485
HpyCH4III	ACNGT	6 cut(s)	40, 98, 229, 407, 424, 481
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	251, 315, 471
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	7 cut(s)	122, 345, 351, 380, 390, 407, 478
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	2 cut(s)	113, 147
MaeIII	GTNAC	4 cut(s)	3, 76, 340, 407
MalI	GATC	3 cut(s)	253, 317, 473
MboI	GATC	3 cut(s)	251, 315, 471
MboII	GAAGA	5 cut(s)	34, 95, 245, 271, 274
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	1 cut(s)	493
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	2 cut(s)	225, 316
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	2 cut(s)	54, 485
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	3 cut(s)	251, 315, 471
NlaIII	CATG	1 cut(s)	439
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	3 cut(s)	76, 340, 407
Ple19I	CGATCG	1 cut(s)	254
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	315
PvuI	CGATCG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	61, 226
RsaNI	GTAC	2 cut(s)	60, 225
RseI	CAYNNNNRTG	1 cut(s)	351
SacII	CCGCGG	1 cut(s)	55
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	251, 315, 471
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	109
SexAI	ACCWGGT	1 cut(s)	393
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SgrDI	CGTCGACG	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	52, 54, 349
SspMI	CTAG	2 cut(s)	113, 147
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	6 cut(s)	40, 98, 229, 407, 424, 481
TaqI	TCGA	3 cut(s)	93, 103, 426
TasI	AATT	1 cut(s)	493
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	3 cut(s)	76, 340, 407
Tsp45I	GTSAC	3 cut(s)	76, 340, 407
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	472
XagI	CCTNNNNNAGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	113, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.