Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861 |
| rosa_laevigata | RLG00000001228 RLG00000013425 RLG00000013426 |
| rosa_multiflora | Rmu_sc0002030.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770 |
| rosa_rugosa | Rorug06G0096800 Rorug06G0096900 |
| rosa_samantha | Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100 |
| rosa_wichuraiana | Rw6G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 23 |
| AccI | GTMKAC | 1 cut(s) | 129 |
| AciI | CCGC | 2 cut(s) | 478, 484 |
| AclI | AACGTT | 1 cut(s) | 627 |
| AclWI | GGATC | 1 cut(s) | 63 |
| AcoI | YGGCCR | 1 cut(s) | 150 |
| AcsI | RAATTY | 1 cut(s) | 638 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 23, 106, 139 |
| AflIII | ACRYGT | 2 cut(s) | 409, 663 |
| AgsI | TTSAA | 7 cut(s) | 62, 416, 443, 493, 575, 632, 655 |
| AjiI | CACGTC | 1 cut(s) | 664 |
| AjnI | CCWGG | 1 cut(s) | 132 |
| AluBI | AGCT | 4 cut(s) | 156, 294, 421, 679 |
| AluI | AGCT | 4 cut(s) | 156, 294, 421, 679 |
| Alw26I | GTCTC | 2 cut(s) | 230, 541 |
| AlwI | GGATC | 1 cut(s) | 63 |
| Ama87I | CYCGRG | 1 cut(s) | 179 |
| AoxI | GGCC | 4 cut(s) | 25, 150, 435, 530 |
| ApoI | RAATTY | 1 cut(s) | 638 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 143 |
| AspS9I | GGNCC | 2 cut(s) | 435, 451 |
| AsuHPI | GGTGA | 1 cut(s) | 83 |
| AsuII | TTCGAA | 1 cut(s) | 347 |
| AvaI | CYCGRG | 1 cut(s) | 179 |
| AvaII | GGWCC | 1 cut(s) | 451 |
| BalI | TGGCCA | 1 cut(s) | 152 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 256, 288 |
| BbsI | GAAGAC | 1 cut(s) | 356 |
| BbvCI | CCTCAGC | 1 cut(s) | 693 |
| BceAI | ACGGC | 1 cut(s) | 110 |
| BciT130I | CCWGG | 1 cut(s) | 134 |
| BcoDI | GTCTC | 2 cut(s) | 230, 541 |
| BfaI | CTAG | 1 cut(s) | 174 |
| BglII | AGATCT | 1 cut(s) | 115 |
| Bme1390I | CCNGG | 1 cut(s) | 134 |
| Bme18I | GGWCC | 1 cut(s) | 451 |
| BmeT110I | CYCGRG | 1 cut(s) | 179 |
| BmgBI | CACGTC | 1 cut(s) | 664 |
| BmgT120I | GGNCC | 2 cut(s) | 435, 451 |
| BmiI | GGNNCC | 1 cut(s) | 9 |
| BmrFI | CCNGG | 1 cut(s) | 134 |
| BmsI | GCATC | 3 cut(s) | 80, 232, 274 |
| BoxI | GACNNNNGTC | 1 cut(s) | 181 |
| BpiI | GAAGAC | 1 cut(s) | 356 |
| BpmI | CTGGAG | 1 cut(s) | 455 |
| Bpu10I | CCTNAGC | 1 cut(s) | 693 |
| Bpu14I | TTCGAA | 1 cut(s) | 347 |
| BpuEI | CTTGAG | 2 cut(s) | 614, 695 |
| BsaJI | CCNNGG | 2 cut(s) | 133, 338 |
| BsaWI | WCCGGW | 1 cut(s) | 52 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 105, 135, 229, 259 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 23, 106, 139 |
| BseBI | CCWGG | 1 cut(s) | 134 |
| BseDI | CCNNGG | 2 cut(s) | 133, 338 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 23, 106, 139 |
| BseMII | CTCAG | 5 cut(s) | 207, 251, 294, 621, 684 |
| BshFI | GGCC | 4 cut(s) | 27, 152, 437, 532 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BsiHKCI | CYCGRG | 1 cut(s) | 179 |
| BsiSI | CCGG | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 23, 106, 139 |
| BsmAI | GTCTC | 2 cut(s) | 230, 541 |
| BsnI | GGCC | 4 cut(s) | 27, 152, 437, 532 |
| BsoBI | CYCGRG | 1 cut(s) | 179 |
| Bsp119I | TTCGAA | 1 cut(s) | 347 |
| Bsp143I | GATC | 3 cut(s) | 55, 115, 496 |
| BspACI | CCGC | 2 cut(s) | 478, 484 |
| BspANI | GGCC | 4 cut(s) | 27, 152, 437, 532 |
| BspCNI | CTCAG | 5 cut(s) | 208, 252, 295, 620, 685 |
| BspLI | GGNNCC | 1 cut(s) | 9 |
| BspPI | GGATC | 1 cut(s) | 63 |
| BspT104I | TTCGAA | 1 cut(s) | 347 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BssECI | CCNNGG | 2 cut(s) | 133, 338 |
| BssMI | GATC | 3 cut(s) | 55, 115, 496 |
| Bst2UI | CCWGG | 1 cut(s) | 134 |
| Bst4CI | ACNGT | 5 cut(s) | 23, 46, 279, 339, 552 |
| BstBI | TTCGAA | 1 cut(s) | 347 |
| BstC8I | GCNNGC | 1 cut(s) | 154 |
| BstDEI | CTNAG | 5 cut(s) | 216, 260, 303, 607, 693 |
| BstDSI | CCRYGG | 1 cut(s) | 338 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstKTI | GATC | 3 cut(s) | 58, 118, 499 |
| BstMAI | GTCTC | 2 cut(s) | 230, 541 |
| BstMBI | GATC | 3 cut(s) | 55, 115, 496 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 475 |
| BstNI | CCWGG | 1 cut(s) | 134 |
| BstNSI | RCATGY | 1 cut(s) | 413 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 181 |
| BstSCI | CCNGG | 1 cut(s) | 132 |
| BstV2I | GAAGAC | 1 cut(s) | 356 |
| BstX2I | RGATCY | 2 cut(s) | 55, 115 |
| BstYI | RGATCY | 2 cut(s) | 55, 115 |
| BsuRI | GGCC | 4 cut(s) | 27, 152, 437, 532 |
| BtgI | CCRYGG | 1 cut(s) | 338 |
| BtrI | CACGTC | 1 cut(s) | 664 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| Cac8I | GCNNGC | 1 cut(s) | 154 |
| Cfr13I | GGNCC | 2 cut(s) | 435, 451 |
| CviAII | CATG | 5 cut(s) | 104, 326, 410, 466, 536 |
| DdeI | CTNAG | 5 cut(s) | 216, 260, 303, 607, 693 |
| DpnI | GATC | 3 cut(s) | 57, 117, 498 |
| DpnII | GATC | 3 cut(s) | 55, 115, 496 |
| EaeI | YGGCCR | 1 cut(s) | 150 |
| Eco47I | GGWCC | 1 cut(s) | 451 |
| Eco88I | CYCGRG | 1 cut(s) | 179 |
| EcoRII | CCWGG | 1 cut(s) | 132 |
| FaeI | CATG | 5 cut(s) | 107, 329, 413, 469, 539 |
| FatI | CATG | 5 cut(s) | 103, 325, 409, 465, 535 |
| FauI | CCCGC | 1 cut(s) | 477 |
| FblI | GTMKAC | 1 cut(s) | 129 |
| FokI | GGATG | 1 cut(s) | 296 |
| FspBI | CTAG | 1 cut(s) | 174 |
| GsuI | CTGGAG | 1 cut(s) | 455 |
| HaeIII | GGCC | 4 cut(s) | 27, 152, 437, 532 |
| HapII | CCGG | 1 cut(s) | 53 |
| Hin1II | CATG | 5 cut(s) | 107, 329, 413, 469, 539 |
| HincII | GTYRAC | 1 cut(s) | 186 |
| HindII | GTYRAC | 1 cut(s) | 186 |
| HinfI | GANTC | 4 cut(s) | 177, 182, 352, 521 |
| HpaII | CCGG | 1 cut(s) | 53 |
| HphI | GGTGA | 1 cut(s) | 83 |
| Hpy166II | GTNNAC | 2 cut(s) | 130, 186 |
| Hpy188I | TCNGA | 5 cut(s) | 171, 217, 304, 507, 610 |
| Hpy188III | TCNNGA | 8 cut(s) | 87, 233, 388, 443, 472, 525, 659, 674 |
| Hpy8I | GTNNAC | 2 cut(s) | 130, 186 |
| Hpy99I | CGWCG | 2 cut(s) | 125, 171 |
| HpyAV | CCTTC | 4 cut(s) | 110, 133, 222, 522 |
| HpyCH4III | ACNGT | 5 cut(s) | 23, 46, 279, 339, 552 |
| HpyCH4IV | ACGT | 3 cut(s) | 627, 663, 728 |
| HpyCH4V | TGCA | 2 cut(s) | 93, 406 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 475 |
| HpyF3I | CTNAG | 5 cut(s) | 216, 260, 303, 607, 693 |
| HpySE526I | ACGT | 3 cut(s) | 627, 663, 728 |
| Hsp92II | CATG | 5 cut(s) | 107, 329, 413, 469, 539 |
| Kzo9I | GATC | 3 cut(s) | 55, 115, 496 |
| LmnI | GCTCC | 2 cut(s) | 250, 474 |
| LweI | GCATC | 3 cut(s) | 80, 232, 274 |
| MaeI | CTAG | 1 cut(s) | 174 |
| MaeII | ACGT | 3 cut(s) | 627, 663, 728 |
| MaeIII | GTNAC | 4 cut(s) | 71, 328, 552, 666 |
| MalI | GATC | 3 cut(s) | 57, 117, 498 |
| MboI | GATC | 3 cut(s) | 55, 115, 496 |
| MboII | GAAGA | 5 cut(s) | 50, 361, 570, 577, 710 |
| MfeI | CAATTG | 2 cut(s) | 254, 310 |
| MflI | RGATCY | 2 cut(s) | 55, 115 |
| MlsI | TGGCCA | 1 cut(s) | 152 |
| MluCI | AATT | 5 cut(s) | 200, 254, 310, 488, 638 |
| MluNI | TGGCCA | 1 cut(s) | 152 |
| MlyI | GAGTC | 3 cut(s) | 171, 191, 346 |
| MmeI | TCCRAC | 2 cut(s) | 149, 261 |
| MnlI | CCTC | 6 cut(s) | 38, 173, 464, 610, 681, 688 |
| Mox20I | TGGCCA | 1 cut(s) | 152 |
| MroXI | GAANNNNTTC | 1 cut(s) | 143 |
| MscI | TGGCCA | 1 cut(s) | 152 |
| Msp20I | TGGCCA | 1 cut(s) | 152 |
| MspI | CCGG | 1 cut(s) | 53 |
| MspR9I | CCNGG | 1 cut(s) | 134 |
| MunI | CAATTG | 2 cut(s) | 254, 310 |
| MvaI | CCWGG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 475 |
| NdeII | GATC | 3 cut(s) | 55, 115, 496 |
| NlaIII | CATG | 5 cut(s) | 107, 329, 413, 469, 539 |
| NlaIV | GGNNCC | 1 cut(s) | 9 |
| NmeAIII | GCCGAG | 1 cut(s) | 13 |
| NmuCI | GTSAC | 3 cut(s) | 71, 328, 552 |
| NspI | RCATGY | 1 cut(s) | 413 |
| NspV | TTCGAA | 1 cut(s) | 347 |
| PaeR7I | CTCGAG | 1 cut(s) | 179 |
| PciI | ACATGT | 1 cut(s) | 409 |
| PdmI | GAANNNNTTC | 1 cut(s) | 143 |
| PfeI | GAWTC | 1 cut(s) | 521 |
| PflFI | GACNNNGTC | 1 cut(s) | 326 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 23 |
| PleI | GAGTC | 3 cut(s) | 171, 190, 346 |
| PpsI | GAGTC | 3 cut(s) | 171, 190, 346 |
| PscI | ACATGT | 1 cut(s) | 409 |
| PshAI | GACNNNNGTC | 1 cut(s) | 181 |
| Psp1406I | AACGTT | 1 cut(s) | 627 |
| Psp6I | CCWGG | 1 cut(s) | 132 |
| PspGI | CCWGG | 1 cut(s) | 132 |
| PspN4I | GGNNCC | 1 cut(s) | 9 |
| PspPI | GGNCC | 2 cut(s) | 435, 451 |
| PspXI | VCTCGAGB | 1 cut(s) | 179 |
| PsuI | RGATCY | 2 cut(s) | 55, 115 |
| PsyI | GACNNNGTC | 1 cut(s) | 326 |
| Sau3AI | GATC | 3 cut(s) | 55, 115, 496 |
| Sau96I | GGNCC | 2 cut(s) | 435, 451 |
| SchI | GAGTC | 3 cut(s) | 171, 191, 346 |
| ScrFI | CCNGG | 1 cut(s) | 134 |
| SfaNI | GCATC | 3 cut(s) | 80, 232, 274 |
| Sfr274I | CTCGAG | 1 cut(s) | 179 |
| SfuI | TTCGAA | 1 cut(s) | 347 |
| SinI | GGWCC | 1 cut(s) | 451 |
| SlaI | CTCGAG | 1 cut(s) | 179 |
| SmlI | CTYRAG | 3 cut(s) | 179, 593, 674 |
| SmoI | CTYRAG | 3 cut(s) | 179, 593, 674 |
| Sse9I | AATT | 5 cut(s) | 200, 254, 310, 488, 638 |
| SsiI | CCGC | 2 cut(s) | 478, 484 |
| SspMI | CTAG | 1 cut(s) | 174 |
| StyD4I | CCNGG | 1 cut(s) | 132 |
| TaaI | ACNGT | 5 cut(s) | 23, 46, 279, 339, 552 |
| TaiI | ACGT | 3 cut(s) | 630, 666, 731 |
| TaqI | TCGA | 4 cut(s) | 180, 190, 347, 456 |
| TasI | AATT | 5 cut(s) | 200, 254, 310, 488, 638 |
| TfiI | GAWTC | 1 cut(s) | 521 |
| TseFI | GTSAC | 3 cut(s) | 71, 328, 552 |
| Tsp45I | GTSAC | 3 cut(s) | 71, 328, 552 |
| TspDTI | ATGAA | 3 cut(s) | 92, 599, 631 |
| TspGWI | ACGGA | 1 cut(s) | 155 |
| Tth111I | GACNNNGTC | 1 cut(s) | 326 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 1 cut(s) | 451 |
| XapI | RAATTY | 1 cut(s) | 638 |
| XceI | RCATGY | 1 cut(s) | 413 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 445 |
| XhoI | CTCGAG | 1 cut(s) | 179 |
| XmiI | GTMKAC | 1 cut(s) | 129 |
| XmnI | GAANNNNTTC | 1 cut(s) | 143 |
| XspI | CTAG | 1 cut(s) | 174 |