Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861 |
| rosa_laevigata | RLG00000001228 RLG00000013425 RLG00000013426 |
| rosa_multiflora | Rmu_sc0002030.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770 |
| rosa_rugosa | Rorug06G0096800 Rorug06G0096900 |
| rosa_samantha | Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100 |
| rosa_wichuraiana | Rw6G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 6 |
| AccB1I | GGYRCC | 1 cut(s) | 6 |
| AclWI | GGATC | 2 cut(s) | 172, 327 |
| AfaI | GTAC | 1 cut(s) | 8 |
| AflIII | ACRYGT | 1 cut(s) | 304 |
| AgsI | TTSAA | 1 cut(s) | 311 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 236, 268 |
| AluBI | AGCT | 2 cut(s) | 189, 316 |
| AluI | AGCT | 2 cut(s) | 189, 316 |
| Alw26I | GTCTC | 1 cut(s) | 112 |
| AlwI | GGATC | 2 cut(s) | 172, 327 |
| Asp718I | GGTACC | 1 cut(s) | 6 |
| AsuII | TTCGAA | 1 cut(s) | 242 |
| BanI | GGYRCC | 1 cut(s) | 6 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 151, 183 |
| BbsI | GAAGAC | 1 cut(s) | 251 |
| BccI | CCATC | 1 cut(s) | 44 |
| BclI | TGATCA | 1 cut(s) | 217 |
| BcoDI | GTCTC | 1 cut(s) | 112 |
| BmiI | GGNNCC | 1 cut(s) | 8 |
| BmsI | GCATC | 2 cut(s) | 114, 169 |
| BpiI | GAAGAC | 1 cut(s) | 251 |
| BpmI | CTGGAG | 1 cut(s) | 113 |
| Bpu14I | TTCGAA | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 1 cut(s) | 233 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 111, 141 |
| BseDI | CCNNGG | 1 cut(s) | 233 |
| BseMII | CTCAG | 3 cut(s) | 89, 146, 189 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BshNI | GGYRCC | 1 cut(s) | 6 |
| BsmAI | GTCTC | 1 cut(s) | 112 |
| Bsp119I | TTCGAA | 1 cut(s) | 242 |
| Bsp143I | GATC | 3 cut(s) | 164, 217, 319 |
| BspCNI | CTCAG | 3 cut(s) | 90, 147, 190 |
| BspLI | GGNNCC | 1 cut(s) | 8 |
| BspPI | GGATC | 2 cut(s) | 172, 327 |
| BspT104I | TTCGAA | 1 cut(s) | 242 |
| BspT107I | GGYRCC | 1 cut(s) | 6 |
| BssECI | CCNNGG | 1 cut(s) | 233 |
| BssMI | GATC | 3 cut(s) | 164, 217, 319 |
| Bst4CI | ACNGT | 2 cut(s) | 174, 234 |
| BstBI | TTCGAA | 1 cut(s) | 242 |
| BstDEI | CTNAG | 3 cut(s) | 98, 155, 198 |
| BstDSI | CCRYGG | 1 cut(s) | 233 |
| BstKTI | GATC | 3 cut(s) | 167, 220, 322 |
| BstMAI | GTCTC | 1 cut(s) | 112 |
| BstMBI | GATC | 3 cut(s) | 164, 217, 319 |
| BstNSI | RCATGY | 1 cut(s) | 308 |
| BstV2I | GAAGAC | 1 cut(s) | 251 |
| BstX2I | RGATCY | 2 cut(s) | 164, 319 |
| BstYI | RGATCY | 2 cut(s) | 164, 319 |
| BtgI | CCRYGG | 1 cut(s) | 233 |
| Csp6I | GTAC | 1 cut(s) | 7 |
| CviAII | CATG | 2 cut(s) | 221, 305 |
| CviJI | RGCY | 2 cut(s) | 189, 316 |
| CviKI_1 | RGCY | 2 cut(s) | 189, 316 |
| CviQI | GTAC | 1 cut(s) | 7 |
| DdeI | CTNAG | 3 cut(s) | 98, 155, 198 |
| DpnI | GATC | 3 cut(s) | 166, 219, 321 |
| DpnII | GATC | 3 cut(s) | 164, 217, 319 |
| FaeI | CATG | 2 cut(s) | 224, 308 |
| FaiI | YATR | 5 cut(s) | 78, 104, 222, 306, 325 |
| FatI | CATG | 2 cut(s) | 220, 304 |
| FbaI | TGATCA | 1 cut(s) | 217 |
| GsuI | CTGGAG | 1 cut(s) | 113 |
| Hin1II | CATG | 2 cut(s) | 224, 308 |
| HincII | GTYRAC | 1 cut(s) | 68 |
| HindII | GTYRAC | 1 cut(s) | 68 |
| HinfI | GANTC | 3 cut(s) | 56, 137, 247 |
| Hpy166II | GTNNAC | 1 cut(s) | 68 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 199 |
| Hpy188III | TCNNGA | 3 cut(s) | 115, 130, 283 |
| Hpy8I | GTNNAC | 1 cut(s) | 68 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 2 cut(s) | 174, 234 |
| HpyCH4V | TGCA | 2 cut(s) | 47, 301 |
| HpyF3I | CTNAG | 3 cut(s) | 98, 155, 198 |
| Hsp92II | CATG | 2 cut(s) | 224, 308 |
| KpnI | GGTACC | 1 cut(s) | 10 |
| Ksp22I | TGATCA | 1 cut(s) | 217 |
| Kzo9I | GATC | 3 cut(s) | 164, 217, 319 |
| LmnI | GCTCC | 1 cut(s) | 132 |
| LpnPI | CCDG | 4 cut(s) | 100, 143, 268, 302 |
| LweI | GCATC | 2 cut(s) | 114, 169 |
| MalI | GATC | 3 cut(s) | 166, 219, 321 |
| MboI | GATC | 3 cut(s) | 164, 217, 319 |
| MboII | GAAGA | 2 cut(s) | 18, 256 |
| MfeI | CAATTG | 2 cut(s) | 149, 205 |
| MflI | RGATCY | 2 cut(s) | 164, 319 |
| MluCI | AATT | 3 cut(s) | 82, 149, 205 |
| MlyI | GAGTC | 2 cut(s) | 131, 241 |
| MnlI | CCTC | 4 cut(s) | 40, 43, 326, 330 |
| MunI | CAATTG | 2 cut(s) | 149, 205 |
| NdeII | GATC | 3 cut(s) | 164, 217, 319 |
| NlaIII | CATG | 2 cut(s) | 224, 308 |
| NlaIV | GGNNCC | 1 cut(s) | 8 |
| NspI | RCATGY | 1 cut(s) | 308 |
| NspV | TTCGAA | 1 cut(s) | 242 |
| PciI | ACATGT | 1 cut(s) | 304 |
| PfeI | GAWTC | 1 cut(s) | 56 |
| PleI | GAGTC | 2 cut(s) | 131, 241 |
| PpsI | GAGTC | 2 cut(s) | 131, 241 |
| PscI | ACATGT | 1 cut(s) | 304 |
| PspN4I | GGNNCC | 1 cut(s) | 8 |
| PsuI | RGATCY | 2 cut(s) | 164, 319 |
| RsaI | GTAC | 1 cut(s) | 8 |
| RsaNI | GTAC | 1 cut(s) | 7 |
| Sau3AI | GATC | 3 cut(s) | 164, 217, 319 |
| SchI | GAGTC | 2 cut(s) | 131, 241 |
| SetI | ASST | 4 cut(s) | 67, 96, 191, 318 |
| SfaNI | GCATC | 2 cut(s) | 114, 169 |
| SfuI | TTCGAA | 1 cut(s) | 242 |
| Sse9I | AATT | 3 cut(s) | 82, 149, 205 |
| TaaI | ACNGT | 2 cut(s) | 174, 234 |
| TaqI | TCGA | 2 cut(s) | 72, 242 |
| TasI | AATT | 3 cut(s) | 82, 149, 205 |
| TfiI | GAWTC | 1 cut(s) | 56 |
| XceI | RCATGY | 1 cut(s) | 308 |