Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861 |
| rosa_laevigata | RLG00000001228 RLG00000013425 RLG00000013426 |
| rosa_multiflora | Rmu_sc0002030.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770 |
| rosa_rugosa | Rorug06G0096800 Rorug06G0096900 |
| rosa_samantha | Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100 |
| rosa_wichuraiana | Rw6G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 39, 452 |
| AclWI | GGATC | 3 cut(s) | 70, 205, 360 |
| AflIII | ACRYGT | 1 cut(s) | 337 |
| AgsI | TTSAA | 3 cut(s) | 344, 417, 467 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 269, 301 |
| AluBI | AGCT | 4 cut(s) | 71, 222, 349, 368 |
| AluI | AGCT | 4 cut(s) | 71, 222, 349, 368 |
| Alw26I | GTCTC | 1 cut(s) | 146 |
| AlwI | GGATC | 3 cut(s) | 70, 205, 360 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 36 |
| AoxI | GGCC | 1 cut(s) | 409 |
| AspS9I | GGNCC | 2 cut(s) | 409, 425 |
| AsuII | TTCGAA | 1 cut(s) | 275 |
| AvaII | GGWCC | 1 cut(s) | 425 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 184, 216 |
| BbsI | GAAGAC | 1 cut(s) | 284 |
| BccI | CCATC | 2 cut(s) | 35, 261 |
| BcoDI | GTCTC | 1 cut(s) | 146 |
| Bme18I | GGWCC | 1 cut(s) | 425 |
| BmgT120I | GGNCC | 2 cut(s) | 409, 425 |
| BmsI | GCATC | 2 cut(s) | 148, 202 |
| BpiI | GAAGAC | 1 cut(s) | 284 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 88, 120 |
| BpmI | CTGGAG | 2 cut(s) | 147, 429 |
| Bpu14I | TTCGAA | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 1 cut(s) | 266 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 145, 175 |
| BseDI | CCNNGG | 1 cut(s) | 266 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseMII | CTCAG | 3 cut(s) | 123, 179, 222 |
| BshFI | GGCC | 1 cut(s) | 411 |
| BsmAI | GTCTC | 1 cut(s) | 146 |
| BsnI | GGCC | 1 cut(s) | 411 |
| Bsp119I | TTCGAA | 1 cut(s) | 275 |
| Bsp143I | GATC | 4 cut(s) | 62, 197, 352, 470 |
| BspACI | CCGC | 2 cut(s) | 39, 452 |
| BspANI | GGCC | 1 cut(s) | 411 |
| BspCNI | CTCAG | 3 cut(s) | 124, 180, 223 |
| BspPI | GGATC | 3 cut(s) | 70, 205, 360 |
| BspT104I | TTCGAA | 1 cut(s) | 275 |
| BssECI | CCNNGG | 1 cut(s) | 266 |
| BssMI | GATC | 4 cut(s) | 62, 197, 352, 470 |
| Bst4CI | ACNGT | 2 cut(s) | 207, 267 |
| BstBI | TTCGAA | 1 cut(s) | 275 |
| BstDEI | CTNAG | 3 cut(s) | 132, 188, 231 |
| BstDSI | CCRYGG | 1 cut(s) | 266 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstKTI | GATC | 4 cut(s) | 65, 200, 355, 473 |
| BstMAI | GTCTC | 1 cut(s) | 146 |
| BstMBI | GATC | 4 cut(s) | 62, 197, 352, 470 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 449 |
| BstNSI | RCATGY | 1 cut(s) | 341 |
| BstV2I | GAAGAC | 1 cut(s) | 284 |
| BstX2I | RGATCY | 2 cut(s) | 197, 352 |
| BstYI | RGATCY | 2 cut(s) | 197, 352 |
| BsuRI | GGCC | 1 cut(s) | 411 |
| BtgI | CCRYGG | 1 cut(s) | 266 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| CaiI | CAGNNNCTG | 1 cut(s) | 36 |
| Cfr13I | GGNCC | 2 cut(s) | 409, 425 |
| CviAII | CATG | 2 cut(s) | 338, 440 |
| CviJI | RGCY | 8 cut(s) | 10, 23, 71, 222, 349, 368, 411, 437 |
| CviKI_1 | RGCY | 8 cut(s) | 10, 23, 71, 222, 349, 368, 411, 437 |
| DdeI | CTNAG | 3 cut(s) | 132, 188, 231 |
| DpnI | GATC | 4 cut(s) | 64, 199, 354, 472 |
| DpnII | GATC | 4 cut(s) | 62, 197, 352, 470 |
| DraI | TTTAAA | 1 cut(s) | 18 |
| Eco47I | GGWCC | 1 cut(s) | 425 |
| FaeI | CATG | 2 cut(s) | 341, 443 |
| FaiI | YATR | 7 cut(s) | 112, 138, 339, 365, 371, 375, 441 |
| FatI | CATG | 2 cut(s) | 337, 439 |
| FokI | GGATG | 1 cut(s) | 224 |
| GsuI | CTGGAG | 2 cut(s) | 147, 429 |
| HaeIII | GGCC | 1 cut(s) | 411 |
| Hin1II | CATG | 2 cut(s) | 341, 443 |
| HincII | GTYRAC | 1 cut(s) | 102 |
| HindII | GTYRAC | 1 cut(s) | 102 |
| HindIII | AAGCTT | 1 cut(s) | 69 |
| HinfI | GANTC | 2 cut(s) | 171, 280 |
| Hpy166II | GTNNAC | 1 cut(s) | 102 |
| Hpy188I | TCNGA | 4 cut(s) | 67, 133, 232, 481 |
| Hpy188III | TCNNGA | 5 cut(s) | 149, 164, 316, 417, 446 |
| Hpy8I | GTNNAC | 1 cut(s) | 102 |
| HpyAV | CCTTC | 1 cut(s) | 138 |
| HpyCH4III | ACNGT | 2 cut(s) | 207, 267 |
| HpyCH4V | TGCA | 1 cut(s) | 334 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 449 |
| HpyF3I | CTNAG | 3 cut(s) | 132, 188, 231 |
| Hsp92II | CATG | 2 cut(s) | 341, 443 |
| Kzo9I | GATC | 4 cut(s) | 62, 197, 352, 470 |
| LmnI | GCTCC | 2 cut(s) | 166, 448 |
| LpnPI | CCDG | 5 cut(s) | 134, 177, 301, 335, 459 |
| LweI | GCATC | 2 cut(s) | 148, 202 |
| MalI | GATC | 4 cut(s) | 64, 199, 354, 472 |
| MboI | GATC | 4 cut(s) | 62, 197, 352, 470 |
| MboII | GAAGA | 3 cut(s) | 16, 289, 347 |
| MfeI | CAATTG | 2 cut(s) | 182, 238 |
| MflI | RGATCY | 2 cut(s) | 197, 352 |
| MluCI | AATT | 4 cut(s) | 116, 182, 238, 462 |
| MlyI | GAGTC | 1 cut(s) | 274 |
| MmeI | TCCRAC | 1 cut(s) | 189 |
| MnlI | CCTC | 5 cut(s) | 34, 90, 372, 376, 438 |
| MseI | TTAA | 1 cut(s) | 17 |
| MunI | CAATTG | 2 cut(s) | 182, 238 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 449 |
| NdeII | GATC | 4 cut(s) | 62, 197, 352, 470 |
| NlaIII | CATG | 2 cut(s) | 341, 443 |
| NspI | RCATGY | 1 cut(s) | 341 |
| NspV | TTCGAA | 1 cut(s) | 275 |
| PciI | ACATGT | 1 cut(s) | 337 |
| PfeI | GAWTC | 1 cut(s) | 171 |
| PleI | GAGTC | 1 cut(s) | 274 |
| PpsI | GAGTC | 1 cut(s) | 274 |
| PscI | ACATGT | 1 cut(s) | 337 |
| PspPI | GGNCC | 2 cut(s) | 409, 425 |
| PstNI | CAGNNNCTG | 1 cut(s) | 36 |
| PsuI | RGATCY | 2 cut(s) | 197, 352 |
| SaqAI | TTAA | 1 cut(s) | 17 |
| Sau3AI | GATC | 4 cut(s) | 62, 197, 352, 470 |
| Sau96I | GGNCC | 2 cut(s) | 409, 425 |
| SchI | GAGTC | 1 cut(s) | 274 |
| SetI | ASST | 7 cut(s) | 73, 101, 130, 224, 351, 370, 430 |
| SfaNI | GCATC | 2 cut(s) | 148, 202 |
| SfuI | TTCGAA | 1 cut(s) | 275 |
| SinI | GGWCC | 1 cut(s) | 425 |
| Sse9I | AATT | 4 cut(s) | 116, 182, 238, 462 |
| SsiI | CCGC | 2 cut(s) | 39, 452 |
| TaaI | ACNGT | 2 cut(s) | 207, 267 |
| TaqI | TCGA | 3 cut(s) | 106, 275, 430 |
| TasI | AATT | 4 cut(s) | 116, 182, 238, 462 |
| TfiI | GAWTC | 1 cut(s) | 171 |
| Tru1I | TTAA | 1 cut(s) | 17 |
| Tru9I | TTAA | 1 cut(s) | 17 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 348 |
| VpaK11BI | GGWCC | 1 cut(s) | 425 |
| XceI | RCATGY | 1 cut(s) | 341 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |