Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0275851 RchiOBHm_Chr6g0275861 |
| rosa_laevigata | RLG00000001228 RLG00000013425 RLG00000013426 |
| rosa_multiflora | Rmu_sc0002030.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00033800 Rroxscaffold_3G00224040 Rroxscaffold_4G00311770 |
| rosa_rugosa | Rorug06G0096800 Rorug06G0096900 |
| rosa_samantha | Rh1AG141700 Rh6AG208600 Rh6BG211300 Rh6BG211400 Rh6BG211500 Rh6BG212700 Rh6BG212800 Rh6CG215100 Rh6CG215200 Rh6CG215300 Rh6CG215400 Rh6DG204800 Rh6DG204900 Rh6DG205000 Rh6DG205100 |
| rosa_wichuraiana | Rw6G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 49 |
| AciI | CCGC | 1 cut(s) | 49 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcvI | CACGTG | 1 cut(s) | 58 |
| AcyI | GRCGYC | 1 cut(s) | 144 |
| AfaI | GTAC | 1 cut(s) | 262 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 194 |
| AflIII | ACRYGT | 1 cut(s) | 55 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AluBI | AGCT | 2 cut(s) | 86, 283 |
| AluI | AGCT | 2 cut(s) | 86, 283 |
| AoxI | GGCC | 1 cut(s) | 185 |
| ApeKI | GCWGC | 3 cut(s) | 17, 83, 283 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AsuHPI | GGTGA | 1 cut(s) | 265 |
| AsuII | TTCGAA | 1 cut(s) | 43 |
| BbrPI | CACGTG | 1 cut(s) | 58 |
| BbsI | GAAGAC | 2 cut(s) | 182, 231 |
| BbvI | GCAGC | 3 cut(s) | 4, 95, 270 |
| BciVI | GTATCC | 1 cut(s) | 248 |
| BfuI | GTATCC | 1 cut(s) | 248 |
| BisI | GCNGC | 3 cut(s) | 18, 84, 284 |
| BlsI | GCNGC | 3 cut(s) | 19, 85, 285 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BpiI | GAAGAC | 2 cut(s) | 182, 231 |
| Bpu14I | TTCGAA | 1 cut(s) | 43 |
| BsaAI | YACGTR | 2 cut(s) | 58, 158 |
| BsaHI | GRCGYC | 1 cut(s) | 144 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 194 |
| Bse1I | ACTGG | 1 cut(s) | 12 |
| Bse3DI | GCAATG | 1 cut(s) | 12 |
| BseGI | GGATG | 1 cut(s) | 295 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 194 |
| BseMI | GCAATG | 1 cut(s) | 12 |
| BseNI | ACTGG | 1 cut(s) | 12 |
| BseXI | GCAGC | 3 cut(s) | 4, 95, 270 |
| Bsh1236I | CGCG | 1 cut(s) | 49 |
| BshFI | GGCC | 1 cut(s) | 187 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 194 |
| BsnI | GGCC | 1 cut(s) | 187 |
| Bsp119I | TTCGAA | 1 cut(s) | 43 |
| Bsp143I | GATC | 1 cut(s) | 203 |
| BspACI | CCGC | 1 cut(s) | 49 |
| BspANI | GGCC | 1 cut(s) | 187 |
| BspFNI | CGCG | 1 cut(s) | 49 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| BspT104I | TTCGAA | 1 cut(s) | 43 |
| BsrDI | GCAATG | 1 cut(s) | 12 |
| BsrI | ACTGG | 1 cut(s) | 12 |
| BssMI | GATC | 1 cut(s) | 203 |
| BssNI | GRCGYC | 1 cut(s) | 144 |
| BstACI | GRCGYC | 1 cut(s) | 144 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 124 |
| BstBAI | YACGTR | 2 cut(s) | 58, 158 |
| BstBI | TTCGAA | 1 cut(s) | 43 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 192 |
| BstF5I | GGATG | 1 cut(s) | 295 |
| BstFNI | CGCG | 1 cut(s) | 49 |
| BstKTI | GATC | 1 cut(s) | 206 |
| BstMBI | GATC | 1 cut(s) | 203 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 124 |
| BstNSI | RCATGY | 1 cut(s) | 33 |
| BstUI | CGCG | 1 cut(s) | 49 |
| BstV1I | GCAGC | 3 cut(s) | 4, 95, 270 |
| BstV2I | GAAGAC | 2 cut(s) | 182, 231 |
| BsuI | GTATCC | 1 cut(s) | 248 |
| BsuRI | GGCC | 1 cut(s) | 187 |
| BtsCI | GGATG | 1 cut(s) | 295 |
| BtsIMutI | CAGTG | 1 cut(s) | 5 |
| CseI | GACGC | 1 cut(s) | 152 |
| Csp6I | GTAC | 1 cut(s) | 261 |
| CviAII | CATG | 2 cut(s) | 30, 311 |
| CviJI | RGCY | 7 cut(s) | 76, 86, 166, 187, 248, 283, 305 |
| CviKI_1 | RGCY | 7 cut(s) | 76, 86, 166, 187, 248, 283, 305 |
| CviQI | GTAC | 1 cut(s) | 261 |
| DpnI | GATC | 1 cut(s) | 205 |
| DpnII | GATC | 1 cut(s) | 203 |
| Eco72I | CACGTG | 1 cut(s) | 58 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 192 |
| FaeI | CATG | 2 cut(s) | 33, 314 |
| FaiI | YATR | 5 cut(s) | 31, 123, 125, 278, 312 |
| FatI | CATG | 2 cut(s) | 29, 310 |
| FauI | CCCGC | 1 cut(s) | 42 |
| Fnu4HI | GCNGC | 3 cut(s) | 18, 84, 284 |
| FokI | GGATG | 1 cut(s) | 302 |
| Fsp4HI | GCNGC | 3 cut(s) | 18, 84, 284 |
| GluI | GCNGC | 3 cut(s) | 18, 84, 284 |
| HaeIII | GGCC | 1 cut(s) | 187 |
| HgaI | GACGC | 1 cut(s) | 152 |
| Hin1I | GRCGYC | 1 cut(s) | 144 |
| Hin1II | CATG | 2 cut(s) | 33, 314 |
| HphI | GGTGA | 1 cut(s) | 265 |
| Hpy188III | TCNNGA | 2 cut(s) | 241, 266 |
| HpyAV | CCTTC | 1 cut(s) | 238 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 157 |
| HpyCH4V | TGCA | 3 cut(s) | 20, 161, 310 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 124 |
| HpySE526I | ACGT | 2 cut(s) | 57, 157 |
| Hsp92I | GRCGYC | 1 cut(s) | 144 |
| Hsp92II | CATG | 2 cut(s) | 33, 314 |
| Kzo9I | GATC | 1 cut(s) | 203 |
| LmnI | GCTCC | 1 cut(s) | 68 |
| LpnPI | CCDG | 3 cut(s) | 100, 254, 272 |
| Lsp1109I | GCAGC | 3 cut(s) | 4, 95, 270 |
| MaeII | ACGT | 2 cut(s) | 57, 157 |
| MalI | GATC | 1 cut(s) | 205 |
| MboI | GATC | 1 cut(s) | 203 |
| MboII | GAAGA | 3 cut(s) | 141, 187, 236 |
| MluCI | AATT | 1 cut(s) | 212 |
| MseI | TTAA | 1 cut(s) | 63 |
| MslI | CAYNNNNRTG | 1 cut(s) | 315 |
| MspA1I | CMGCKG | 1 cut(s) | 86 |
| MvnI | CGCG | 1 cut(s) | 49 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 124 |
| NdeII | GATC | 1 cut(s) | 203 |
| NlaIII | CATG | 2 cut(s) | 33, 314 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| NspI | RCATGY | 1 cut(s) | 33 |
| NspV | TTCGAA | 1 cut(s) | 43 |
| PkrI | GCNGC | 3 cut(s) | 19, 85, 285 |
| PmaCI | CACGTG | 1 cut(s) | 58 |
| PmlI | CACGTG | 1 cut(s) | 58 |
| Ppu21I | YACGTR | 2 cut(s) | 58, 158 |
| PspCI | CACGTG | 1 cut(s) | 58 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PvuII | CAGCTG | 1 cut(s) | 86 |
| RsaI | GTAC | 1 cut(s) | 262 |
| RsaNI | GTAC | 1 cut(s) | 261 |
| RseI | CAYNNNNRTG | 1 cut(s) | 315 |
| SaqAI | TTAA | 1 cut(s) | 63 |
| SatI | GCNGC | 3 cut(s) | 18, 84, 284 |
| Sau3AI | GATC | 1 cut(s) | 203 |
| SetI | ASST | 5 cut(s) | 60, 88, 109, 160, 285 |
| SfuI | TTCGAA | 1 cut(s) | 43 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 315 |
| Sse9I | AATT | 1 cut(s) | 212 |
| SsiI | CCGC | 1 cut(s) | 49 |
| TaiI | ACGT | 2 cut(s) | 60, 160 |
| TaqI | TCGA | 1 cut(s) | 43 |
| TasI | AATT | 1 cut(s) | 212 |
| Tru1I | TTAA | 1 cut(s) | 63 |
| Tru9I | TTAA | 1 cut(s) | 63 |
| TscAI | CASTG | 1 cut(s) | 12 |
| TseI | GCWGC | 3 cut(s) | 17, 83, 283 |
| TspRI | CASTG | 1 cut(s) | 12 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 192 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 33 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 283 |