Rh6DG204800

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006431
Physical Location & Seq
Forward (+)
36446962 .. 36449893
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG204800.1

Sequence Viewer

Length: 996 bp
ATGGAAGGTGTGGGAAAGATAATCAGAGCGGTCCTTTGGGCAATAGTTCTGCAATCATTAGTGAACAAAGAGGCATATGTGACCTTACTTGATGGCGATGTCATCCGATTTGGGATGTCAACTCGATTATACCAATTCCAAGCACCTTCTGAGTATAAGCACATTCAGGAGACTGATGCTCCAATACAATTGCTGAGAAGTGGATCTACACCGTTGGATGCTGATAGCTTGACTTCTGAGAGCAATTGGACTTTTGACCATGTCACAAAACCGTGGATTTTGAAGACTCATTTGGCAAATGCTGTCAAAGTTGATGACATCAGGAGATTTTTGGTGTTGCAACATGTTGAAAAGCTGGATCTTCCGTTTATAGCTATGTGTACGAGGGAGGATTGCCCGAGTTTATTCAAAGATCCTGATCAACTTGAAGATTATCCTCCAGATCAGGATAAAAGTGAGCTAAACTGGCACAAGATACTTTGGGCCATTCAAGATTTGGACCTCGAATGGCTCATGCTCCAGAAGCGGAAGCGGGAATTGAAAGATCGTTGTCAGAAGTTCTTTGACGAATCACGAAGGCCACATGATAAGATGAGACAGTCACTATATAAGAAGATTTTTCAATCTTCTATGAAGTTCCTTGAGAGTGCTAACTCAGAGAGAGAGGTTGAGGACGTTGAAACAAAATTCATATTCCATTTCAATCAAGATGTGTTACCTCTTGAGCTACATAATGTCGCTGAGGAAGATATTTGGAAACAAATGTGGGAAGCATGCCAGTATAACGTGAAATCAGTTTATAGCGTCTGCAGCAAGGCTGGCCTGTGGAGGGTTGCATACAACTTTGGTCCTAGCTCTGAAGAACTTGGGTTGCAATTATCAAGGGAAATGAATGTCAATGAGCTGGAGGAACCTGAAGAGATGCCATTGGAGATTGCTGCAAGATTTACATCAGATATTTTTCGAACGCTAGAAGACGTGCTTAAAAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

331

Amino Acids

38.83

Weight (kDa)

5.09

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 3 cut(s) 29, 526, 532
AclWI GGATC 3 cut(s) 211, 366, 407
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 2 cut(s) 879, 936
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 829
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 9 cut(s) 283, 350, 409, 428, 491, 541, 623, 680, 703
AjiI CACGTC 1 cut(s) 979
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 8 cut(s) 228, 355, 374, 460, 727, 855, 904, 990
AluI AGCT 8 cut(s) 228, 355, 374, 460, 727, 855, 904, 990
Alw26I GTCTC 2 cut(s) 164, 589
AlwI GGATC 3 cut(s) 211, 366, 407
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 3 cut(s) 483, 578, 820
ApeKI GCWGC 2 cut(s) 810, 938
ApoI RAATTY 1 cut(s) 686
AspS9I GGNCC 4 cut(s) 31, 483, 499, 848
AsuII TTCGAA 1 cut(s) 964
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 3 cut(s) 31, 499, 848
BarI GAAGNNNNNNTAC 2 cut(s) 190, 222
BbsI GAAGAC 2 cut(s) 290, 981
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 2 cut(s) 822, 925
BccI CCATC 1 cut(s) 86
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 164, 589
BfaI CTAG 2 cut(s) 852, 971
BfmI CTRYAG 1 cut(s) 808
BisI GCNGC 2 cut(s) 811, 939
BlsI GCNGC 2 cut(s) 812, 940
Bme18I GGWCC 3 cut(s) 31, 499, 848
BmeT110I CYCGRG 1 cut(s) 397
BmgBI CACGTC 1 cut(s) 979
BmgT120I GGNCC 4 cut(s) 31, 483, 499, 848
BmiI GGNNCC 1 cut(s) 912
BmsI GCATC 3 cut(s) 166, 208, 912
BpiI GAAGAC 2 cut(s) 290, 981
BpmI CTGGAG 3 cut(s) 423, 503, 926
Bpu10I CCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 964
BpuEI CTTGAG 2 cut(s) 662, 743
BsaBI GATNNNNATC 2 cut(s) 417, 949
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 829
Bse1I ACTGG 2 cut(s) 470, 778
Bse8I GATNNNNATC 2 cut(s) 417, 949
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 3 cut(s) 102, 120, 223
BseJI GATNNNNATC 2 cut(s) 417, 949
BseLI CCNNNNNNNGG 1 cut(s) 829
BseMII CTCAG 5 cut(s) 141, 185, 228, 669, 732
BseNI ACTGG 2 cut(s) 470, 778
BseXI GCAGC 2 cut(s) 822, 925
BshFI GGCC 3 cut(s) 485, 580, 822
BsiHKCI CYCGRG 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 829
BsmAI GTCTC 2 cut(s) 164, 589
BsnI GGCC 3 cut(s) 485, 580, 822
BsoBI CYCGRG 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 964
Bsp143I GATC 6 cut(s) 203, 358, 412, 418, 442, 544
BspACI CCGC 3 cut(s) 29, 526, 532
BspANI GGCC 3 cut(s) 485, 580, 822
BspCNI CTCAG 5 cut(s) 142, 186, 229, 668, 733
BspLI GGNNCC 1 cut(s) 912
BspMAI CTGCAG 1 cut(s) 812
BspPI GGATC 3 cut(s) 211, 366, 407
BspT104I TTCGAA 1 cut(s) 964
BsrBI CCGCTC 1 cut(s) 29
BsrI ACTGG 2 cut(s) 470, 778
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 6 cut(s) 203, 358, 412, 418, 442, 544
Bst4CI ACNGT 3 cut(s) 213, 273, 600
Bst6I CTCTTC 1 cut(s) 912
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 2 cut(s) 775, 820
BstDEI CTNAG 6 cut(s) 150, 194, 237, 655, 741, 993
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 3 cut(s) 102, 120, 223
BstKTI GATC 6 cut(s) 206, 361, 415, 421, 445, 547
BstMAI GTCTC 2 cut(s) 164, 589
BstMBI GATC 6 cut(s) 203, 358, 412, 418, 442, 544
BstMWI GCNNNNNNNGC 4 cut(s) 466, 523, 810, 819
BstNSI RCATGY 2 cut(s) 347, 777
BstSFI CTRYAG 1 cut(s) 808
BstV1I GCAGC 2 cut(s) 822, 925
BstV2I GAAGAC 2 cut(s) 290, 981
BstX2I RGATCY 3 cut(s) 203, 358, 412
BstYI RGATCY 3 cut(s) 203, 358, 412
BsuRI GGCC 3 cut(s) 485, 580, 822
BtgI CCRYGG 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 979
BtsCI GGATG 3 cut(s) 102, 120, 223
Cac8I GCNNGC 2 cut(s) 775, 820
Cfr13I GGNCC 4 cut(s) 31, 483, 499, 848
CseI GACGC 1 cut(s) 793
Csp6I GTAC 1 cut(s) 381
CviAII CATG 5 cut(s) 260, 344, 514, 584, 774
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 6 cut(s) 150, 194, 237, 655, 741, 993
DpnI GATC 6 cut(s) 205, 360, 414, 420, 444, 546
DpnII GATC 6 cut(s) 203, 358, 412, 418, 442, 544
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco47I GGWCC 3 cut(s) 31, 499, 848
Eco57I CTGAAG 2 cut(s) 879, 936
Eco88I CYCGRG 1 cut(s) 397
FaeI CATG 5 cut(s) 263, 347, 517, 587, 777
FalI AAGNNNNNCTT 1 cut(s) 966
FatI CATG 5 cut(s) 259, 343, 513, 583, 773
FauI CCCGC 1 cut(s) 525
FauNDI CATATG 1 cut(s) 76
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 811, 939
FokI GGATG 3 cut(s) 89, 127, 230
Fsp4HI GCNGC 2 cut(s) 811, 939
FspBI CTAG 2 cut(s) 852, 971
GluI GCNGC 2 cut(s) 811, 939
GsuI CTGGAG 3 cut(s) 423, 503, 926
HaeIII GGCC 3 cut(s) 485, 580, 822
HgaI GACGC 1 cut(s) 793
Hin1II CATG 5 cut(s) 263, 347, 517, 587, 777
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 2 cut(s) 286, 569
Hpy166II GTNNAC 3 cut(s) 64, 120, 381
Hpy188I TCNGA 8 cut(s) 26, 107, 151, 238, 555, 658, 859, 955
Hpy8I GTNNAC 3 cut(s) 64, 120, 381
HpyAV CCTTC 2 cut(s) 156, 570
HpyCH4III ACNGT 3 cut(s) 213, 273, 600
HpyCH4IV ACGT 3 cut(s) 675, 786, 978
HpyCH4V TGCA 6 cut(s) 52, 340, 810, 836, 874, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 466, 523, 810, 819
HpyF3I CTNAG 6 cut(s) 150, 194, 237, 655, 741, 993
HpySE526I ACGT 3 cut(s) 675, 786, 978
Hsp92II CATG 5 cut(s) 263, 347, 517, 587, 777
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 6 cut(s) 203, 358, 412, 418, 442, 544
LmnI GCTCC 2 cut(s) 184, 522
Lsp1109I GCAGC 2 cut(s) 822, 925
LweI GCATC 3 cut(s) 166, 208, 912
MaeI CTAG 2 cut(s) 852, 971
MaeII ACGT 3 cut(s) 675, 786, 978
MaeIII GTNAC 4 cut(s) 79, 262, 600, 714
MalI GATC 6 cut(s) 205, 360, 414, 420, 444, 546
MbiI CCGCTC 1 cut(s) 29
MboI GATC 6 cut(s) 203, 358, 412, 418, 442, 544
MboII GAAGA 9 cut(s) 295, 353, 440, 618, 625, 758, 872, 929, 986
MfeI CAATTG 2 cut(s) 188, 244
MflI RGATCY 3 cut(s) 203, 358, 412
MluCI AATT 6 cut(s) 134, 188, 244, 536, 686, 875
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 195
MseI TTAA 1 cut(s) 984
MunI CAATTG 2 cut(s) 188, 244
MwoI GCNNNNNNNGC 4 cut(s) 466, 523, 810, 819
NdeI CATATG 1 cut(s) 76
NdeII GATC 6 cut(s) 203, 358, 412, 418, 442, 544
NlaIII CATG 5 cut(s) 263, 347, 517, 587, 777
NlaIV GGNNCC 1 cut(s) 912
NmuCI GTSAC 3 cut(s) 79, 262, 600
NspI RCATGY 2 cut(s) 347, 777
NspV TTCGAA 1 cut(s) 964
PaeI GCATGC 1 cut(s) 777
PciI ACATGT 1 cut(s) 343
PfeI GAWTC 1 cut(s) 569
PflFI GACNNNGTC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 812, 940
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PscI ACATGT 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 912
PspPI GGNCC 4 cut(s) 31, 483, 499, 848
PstI CTGCAG 1 cut(s) 812
PsuI RGATCY 3 cut(s) 203, 358, 412
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 984
SatI GCNGC 2 cut(s) 811, 939
Sau3AI GATC 6 cut(s) 203, 358, 412, 418, 442, 544
Sau96I GGNCC 4 cut(s) 31, 483, 499, 848
SchI GAGTC 1 cut(s) 280
SfaNI GCATC 3 cut(s) 166, 208, 912
SfcI CTRYAG 1 cut(s) 808
SfuI TTCGAA 1 cut(s) 964
SinI GGWCC 3 cut(s) 31, 499, 848
SmlI CTYRAG 2 cut(s) 641, 722
SmoI CTYRAG 2 cut(s) 641, 722
SphI GCATGC 1 cut(s) 777
Sse9I AATT 6 cut(s) 134, 188, 244, 536, 686, 875
SsiI CCGC 3 cut(s) 29, 526, 532
SspMI CTAG 2 cut(s) 852, 971
TaaI ACNGT 3 cut(s) 213, 273, 600
TaiI ACGT 3 cut(s) 678, 789, 981
TaqI TCGA 3 cut(s) 124, 504, 964
TasI AATT 6 cut(s) 134, 188, 244, 536, 686, 875
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 1 cut(s) 984
Tru9I TTAA 1 cut(s) 984
TseFI GTSAC 3 cut(s) 79, 262, 600
TseI GCWGC 2 cut(s) 810, 938
Tsp45I GTSAC 3 cut(s) 79, 262, 600
TspDTI ATGAA 3 cut(s) 647, 679, 905
TspGWI ACGGA 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 260
VpaK11BI GGWCC 3 cut(s) 31, 499, 848
XapI RAATTY 1 cut(s) 686
XceI RCATGY 2 cut(s) 347, 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XspI CTAG 2 cut(s) 852, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.