Rh6CG215300

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006431
Physical Location & Seq
Reverse (-)
35805815 .. 35807677
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG215300.1

Sequence Viewer

Length: 888 bp
ATGTTAACCATGTGTATCACTGCATTATTTATAGGGTCAACTCGATTATACCAATTCCAAGCACCTTCTGAGTATAAGCACATTCAGGAGACTGATGCTCCAATACAATTGCTGAGAAGTGGATCTACACCGTTGGATGCTGATAGCTTGACTTCTGAGAGCAATTGGACTTTTGACCATGTCACAAAACCGTGGATTTCGAAGACTCATTTGGCAAATGTTGTCAAAGTTGATGACATCAGGAGATTTTTGGTGTTGCAACATGTTGAAAAGCTGGATCTTCCGTTTATAGCTATGTGTAGGAGGGAGGATTGCCCGAGTTTATTCAAAGATCCTGATAAACTTGAAGATTATCCTTCAGATCAGGATAAAAGTGAGCTAAACTGGCACACGATACTTTGGGCCATTCAAGATTTGGACCTCGAACGGCTCATGCTCCAGAAGCGGAAGCGGGAATTGAAAGATCGTTGTCAGAAGTGCTTTGACGACGAATCACGAAGTCCACATGATGAGATGAGTCAGTCACTATATAAGAAGATTTTTCAATCTTCTATGAAGTTCCTTGAGAGTGCTAACTCAGTGAGAGAGGTTGAGGACGTTGAAACAAAATTCATATTCCATTTCAATCAAGATGTTTTACCTCTTGAGCTACATAATGTCGCTGAGGAAGATATTTGGAAACAAGTGTGGGAAGCATGCCAGTATAACGTGAAATCAGTTTATAGCGTCTGCAGCAAGGCTGGCCTGTGGAGGGTTGCATACAACTTTGGTCCTTGCTCTGAAGAACTTGGGTTGCAGTTATCAGGGGAAATGAATATCAATGAGCTGGAGGAACCTGAAGAGATGCCGTTGGAGATTGCTGCAAGATTTACATCAGATATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

295

Amino Acids

34.48

Weight (kDa)

4.88

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 445, 451
AclWI GGATC 3 cut(s) 130, 285, 326
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 3 cut(s) 342, 801, 858
AfiI CCNNNNNNNGG 1 cut(s) 751
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 8 cut(s) 269, 328, 347, 410, 460, 545, 602, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 6 cut(s) 147, 274, 293, 379, 649, 826
AluI AGCT 6 cut(s) 147, 274, 293, 379, 649, 826
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 3 cut(s) 130, 285, 326
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 2 cut(s) 402, 742
ApeKI GCWGC 2 cut(s) 732, 860
ApoI RAATTY 1 cut(s) 608
AspS9I GGNCC 3 cut(s) 402, 418, 770
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 316
AvaII GGWCC 2 cut(s) 418, 770
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
BbsI GAAGAC 1 cut(s) 209
BbvCI CCTCAGC 1 cut(s) 663
BbvI GCAGC 2 cut(s) 744, 847
BceAI ACGGC 2 cut(s) 443, 832
BcoDI GTCTC 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 730
BisI GCNGC 2 cut(s) 733, 861
BlsI GCNGC 2 cut(s) 734, 862
Bme18I GGWCC 2 cut(s) 418, 770
BmeT110I CYCGRG 1 cut(s) 316
BmgT120I GGNCC 3 cut(s) 402, 418, 770
BmiI GGNNCC 1 cut(s) 834
BmsI GCATC 3 cut(s) 85, 127, 834
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 2 cut(s) 422, 848
Bpu10I CCTNAGC 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 2 cut(s) 584, 665
BsaBI GATNNNNATC 1 cut(s) 871
BsaJI CCNNGG 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 751
Bse1I ACTGG 2 cut(s) 389, 700
Bse8I GATNNNNATC 1 cut(s) 871
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 871
BseLI CCNNNNNNNGG 1 cut(s) 751
BseMII CTCAG 5 cut(s) 60, 104, 147, 591, 654
BseNI ACTGG 2 cut(s) 389, 700
BseXI GCAGC 2 cut(s) 744, 847
BshFI GGCC 2 cut(s) 404, 744
BsiHKCI CYCGRG 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 751
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 2 cut(s) 404, 744
BsoBI CYCGRG 1 cut(s) 316
Bsp119I TTCGAA 1 cut(s) 200
Bsp143I GATC 5 cut(s) 122, 277, 331, 361, 463
BspACI CCGC 2 cut(s) 445, 451
BspANI GGCC 2 cut(s) 404, 744
BspCNI CTCAG 5 cut(s) 61, 105, 148, 590, 655
BspLI GGNNCC 1 cut(s) 834
BspMAI CTGCAG 1 cut(s) 734
BspPI GGATC 3 cut(s) 130, 285, 326
BspT104I TTCGAA 1 cut(s) 200
BsrI ACTGG 2 cut(s) 389, 700
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 5 cut(s) 122, 277, 331, 361, 463
Bst4CI ACNGT 2 cut(s) 132, 192
Bst6I CTCTTC 1 cut(s) 834
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 697, 742
BstDEI CTNAG 5 cut(s) 69, 113, 156, 577, 663
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 5 cut(s) 125, 280, 334, 364, 466
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 5 cut(s) 122, 277, 331, 361, 463
BstMWI GCNNNNNNNGC 4 cut(s) 385, 442, 732, 741
BstNSI RCATGY 2 cut(s) 266, 699
BstSFI CTRYAG 1 cut(s) 730
BstV1I GCAGC 2 cut(s) 744, 847
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 3 cut(s) 122, 277, 331
BstYI RGATCY 3 cut(s) 122, 277, 331
BsuRI GGCC 2 cut(s) 404, 744
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 585
Cac8I GCNNGC 2 cut(s) 697, 742
Cfr13I GGNCC 3 cut(s) 402, 418, 770
CseI GACGC 1 cut(s) 715
CviAII CATG 6 cut(s) 10, 179, 263, 433, 506, 696
DdeI CTNAG 5 cut(s) 69, 113, 156, 577, 663
DpnI GATC 5 cut(s) 124, 279, 333, 363, 465
DpnII GATC 5 cut(s) 122, 277, 331, 361, 463
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
Eco47I GGWCC 2 cut(s) 418, 770
Eco57I CTGAAG 3 cut(s) 342, 801, 858
Eco88I CYCGRG 1 cut(s) 316
FaeI CATG 6 cut(s) 13, 182, 266, 436, 509, 699
FatI CATG 6 cut(s) 9, 178, 262, 432, 505, 695
FauI CCCGC 1 cut(s) 444
Fnu4HI GCNGC 2 cut(s) 733, 861
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 733, 861
GluI GCNGC 2 cut(s) 733, 861
GsuI CTGGAG 2 cut(s) 422, 848
HaeIII GGCC 2 cut(s) 404, 744
HgaI GACGC 1 cut(s) 715
Hin1II CATG 6 cut(s) 13, 182, 266, 436, 509, 699
HincII GTYRAC 2 cut(s) 6, 39
HindII GTYRAC 2 cut(s) 6, 39
HinfI GANTC 3 cut(s) 205, 491, 517
HpaI GTTAAC 1 cut(s) 6
Hpy166II GTNNAC 3 cut(s) 6, 39, 503
Hpy188I TCNGA 6 cut(s) 70, 157, 361, 474, 781, 877
Hpy188III TCNNGA 9 cut(s) 86, 241, 335, 365, 410, 439, 495, 629, 644
Hpy8I GTNNAC 3 cut(s) 6, 39, 503
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 2 cut(s) 75, 366
HpyCH4III ACNGT 2 cut(s) 132, 192
HpyCH4IV ACGT 2 cut(s) 597, 708
HpyCH4V TGCA 6 cut(s) 23, 259, 732, 758, 796, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 385, 442, 732, 741
HpyF3I CTNAG 5 cut(s) 69, 113, 156, 577, 663
HpySE526I ACGT 2 cut(s) 597, 708
Hsp92II CATG 6 cut(s) 13, 182, 266, 436, 509, 699
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 5 cut(s) 122, 277, 331, 361, 463
LmnI GCTCC 2 cut(s) 103, 441
Lsp1109I GCAGC 2 cut(s) 744, 847
LweI GCATC 3 cut(s) 85, 127, 834
MaeII ACGT 2 cut(s) 597, 708
MaeIII GTNAC 2 cut(s) 181, 522
MalI GATC 5 cut(s) 124, 279, 333, 363, 465
MboI GATC 5 cut(s) 122, 277, 331, 361, 463
MboII GAAGA 8 cut(s) 214, 272, 359, 540, 547, 680, 794, 851
MfeI CAATTG 2 cut(s) 107, 163
MflI RGATCY 3 cut(s) 122, 277, 331
MluCI AATT 5 cut(s) 53, 107, 163, 455, 608
MlyI GAGTC 2 cut(s) 199, 526
MmeI TCCRAC 2 cut(s) 114, 831
MnlI CCTC 9 cut(s) 297, 301, 431, 580, 586, 651, 658, 744, 823
MseI TTAA 1 cut(s) 5
MunI CAATTG 2 cut(s) 107, 163
MwoI GCNNNNNNNGC 4 cut(s) 385, 442, 732, 741
NdeII GATC 5 cut(s) 122, 277, 331, 361, 463
NlaIII CATG 6 cut(s) 13, 182, 266, 436, 509, 699
NlaIV GGNNCC 1 cut(s) 834
NmuCI GTSAC 2 cut(s) 181, 522
NspI RCATGY 2 cut(s) 266, 699
NspV TTCGAA 1 cut(s) 200
PaeI GCATGC 1 cut(s) 699
PciI ACATGT 1 cut(s) 262
PfeI GAWTC 1 cut(s) 491
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 2 cut(s) 734, 862
PleI GAGTC 2 cut(s) 199, 525
PpsI GAGTC 2 cut(s) 199, 525
PscI ACATGT 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 834
PspPI GGNCC 3 cut(s) 402, 418, 770
PstI CTGCAG 1 cut(s) 734
PsuI RGATCY 3 cut(s) 122, 277, 331
PsyI GACNNNGTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 2 cut(s) 733, 861
Sau3AI GATC 5 cut(s) 122, 277, 331, 361, 463
Sau96I GGNCC 3 cut(s) 402, 418, 770
SchI GAGTC 2 cut(s) 199, 526
SfaNI GCATC 3 cut(s) 85, 127, 834
SfcI CTRYAG 1 cut(s) 730
SfuI TTCGAA 1 cut(s) 200
SinI GGWCC 2 cut(s) 418, 770
SmlI CTYRAG 2 cut(s) 563, 644
SmoI CTYRAG 2 cut(s) 563, 644
SphI GCATGC 1 cut(s) 699
Sse9I AATT 5 cut(s) 53, 107, 163, 455, 608
SsiI CCGC 2 cut(s) 445, 451
TaaI ACNGT 2 cut(s) 132, 192
TaiI ACGT 2 cut(s) 600, 711
TaqI TCGA 3 cut(s) 43, 200, 423
TasI AATT 5 cut(s) 53, 107, 163, 455, 608
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 2 cut(s) 25, 585
TseFI GTSAC 2 cut(s) 181, 522
TseI GCWGC 2 cut(s) 732, 860
Tsp45I GTSAC 2 cut(s) 181, 522
TspDTI ATGAA 3 cut(s) 569, 601, 827
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 2 cut(s) 25, 585
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 418, 770
XapI RAATTY 1 cut(s) 608
XceI RCATGY 2 cut(s) 266, 699
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.