Rh6BG212800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006431
Physical Location & Seq
Reverse (-)
40188262 .. 40194288
6027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG212800.1

Sequence Viewer

Length: 207 bp
ATGGCCAGAGTGAGTGAAGAAGGTCGGCAAAGAAGCACCAACACCGGAGAATCCAAGAGAATTTCAAGAACCTCCTCCACCGTCTTCGGCCTCGGCGGAGGCGCTGCTGTTGTGGACGTCGCGGAAGAAGCCGTCGACGGTACTTTGGGCCCATTCAAGATTTGGACCTCGAATGGCTCATGCTCCAGAAGCGGAAGCGGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

6.99

Weight (kDa)

7.98

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 122
AciI CCGC 4 cut(s) 96, 122, 192, 198
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 66, 157
AoxI GGCC 3 cut(s) 3, 88, 148
ApaI GGGCCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 60
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 3 cut(s) 148, 149, 165
AvaII GGWCC 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 3 cut(s) 148, 149, 165
BmiI GGNNCC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 3 cut(s) 5, 90, 150
BsiSI CCGG 1 cut(s) 45
BsnI GGCC 3 cut(s) 5, 90, 150
Bsp120I GGGCCC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 152
BspACI CCGC 4 cut(s) 96, 122, 192, 198
BspANI GGCC 3 cut(s) 5, 90, 150
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 82, 140
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 200
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstMWI GCNNNNNNNGC 2 cut(s) 128, 189
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 3 cut(s) 5, 90, 150
Cac8I GCNNGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 148, 149, 165
Csp6I GTAC 1 cut(s) 141
CviAII CATG 1 cut(s) 180
CviJI RGCY 5 cut(s) 5, 90, 131, 150, 177
CviKI_1 RGCY 5 cut(s) 5, 90, 131, 150, 177
CviQI GTAC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 1 cut(s) 183
FaiI YATR 1 cut(s) 181
FatI CATG 1 cut(s) 179
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 3 cut(s) 5, 90, 150
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 183
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 115, 136
Hpy188III TCNNGA 3 cut(s) 66, 157, 186
Hpy8I GTNNAC 2 cut(s) 115, 136
Hpy99I CGWCG 3 cut(s) 122, 137, 140
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 2 cut(s) 82, 140
HpyCH4IV ACGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 189
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 183
HspAI GCGC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 3 cut(s) 19, 58, 199
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 1 cut(s) 117
MboII GAAGA 3 cut(s) 29, 76, 137
MhlI GDGCHC 1 cut(s) 152
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 82, 85, 92, 101, 178
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 128, 189
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 150
NmeAIII GCCGAG 1 cut(s) 72
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 150
PspOMI GGGCCC 1 cut(s) 148
PspPI GGNCC 3 cut(s) 148, 149, 165
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SalI GTCGAC 1 cut(s) 134
SatI GCNGC 1 cut(s) 105
Sau96I GGNCC 3 cut(s) 148, 149, 165
SduI GDGCHC 1 cut(s) 152
SetI ASST 4 cut(s) 25, 74, 120, 170
SgrDI CGTCGACG 1 cut(s) 134
SinI GGWCC 1 cut(s) 165
Sse9I AATT 1 cut(s) 60
SsiI CCGC 4 cut(s) 96, 122, 192, 198
TaaI ACNGT 2 cut(s) 82, 140
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 135, 170
TasI AATT 1 cut(s) 60
TfiI GAWTC 1 cut(s) 50
TseI GCWGC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 135
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.