Rh6BG211400

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006431
Physical Location & Seq
Reverse (-)
39877784 .. 39879655
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG211400.1

Sequence Viewer

Length: 750 bp
ATGTTGTTGTTCTTCCTCCTTCATCTATCTTGCAAGACGAGATTCCAAAGGTCAACTCGATTATACCAATTCCAAGCACCTTCCGAGTATAAGCACATTCAGGAGACTGATGCTCCAGAAAGACTCCAAATACAATTGCTGAGAAGTGGATCTACACCGTTGGATGCTGATAGCTTGACTTCTGAGAGCAATTGGATTTTTGATCATGCCACAAAACCGTGGATTTCGAAGACTCATTTGGCAAATGCTGTCAAAGTTGATGACATCAGGAGATTTTTGGTGTTGCAACATGTTGAAAAGCTGGATCTATGTCACAAGGTACTTTGGGCCATTCAAGATTTGGACCTCGAATGGCTCATGCTCCAGAAGCGGAAGCGGGAATTGAAAGATCGTTGTCAGAAGTGCTTTGACGACGAATCACGAAGTCCGCATGATGAGATGAGTCAGTCACTATATAAGAAGATTTTTCAATCTTCTATGAAGTTCCTTGAGAGTGCTACCTCAGAGAGAGAGAGGTTGAGGACGTTGAAACAAAATTCATATTCCATTTCAATCAAGATGTGTTACCTCTTGAGCTACATAATGTCGCTGAGGAAGATATTTGGAAGCAAGTGTGGGAAGCATGCCAGTATAAGGTGGAATCAGTTTATAGCGTCTGCAGCAAGGCTGGCCTGTGGAGGGTTGCATGCAACTTCGGTCCTAGCTCTGAAGAACTTGGTTGCAATGATCAGGGGAAATGAATATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

249

Amino Acids

29.11

Weight (kDa)

9.44

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 370, 376, 428
AclWI GGATC 2 cut(s) 157, 312
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 728
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 633, 678
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 6 cut(s) 296, 335, 385, 470, 529, 552
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 4 cut(s) 174, 301, 576, 704
AluI AGCT 4 cut(s) 174, 301, 576, 704
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 157, 312
AoxI GGCC 2 cut(s) 327, 669
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 535
AspS9I GGNCC 3 cut(s) 327, 343, 697
AsuII TTCGAA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 343, 697
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BbsI GAAGAC 1 cut(s) 236
BbvCI CCTCAGC 1 cut(s) 590
BbvI GCAGC 1 cut(s) 671
BclI TGATCA 2 cut(s) 202, 726
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 701
BfmI CTRYAG 1 cut(s) 657
BisI GCNGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 661
Bme18I GGWCC 2 cut(s) 343, 697
BmgT120I GGNCC 3 cut(s) 327, 343, 697
BmsI GCATC 2 cut(s) 100, 154
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 2 cut(s) 99, 347
Bpu10I CCTNAGC 1 cut(s) 590
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 509, 592
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 2 cut(s) 633, 678
Bse1I ACTGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 729
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 633, 678
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 4 cut(s) 131, 174, 516, 581
BseNI ACTGG 1 cut(s) 627
BseXI GCAGC 1 cut(s) 671
BshFI GGCC 2 cut(s) 329, 671
BslI CCNNNNNNNGG 2 cut(s) 633, 678
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 2 cut(s) 329, 671
Bsp119I TTCGAA 1 cut(s) 227
Bsp143I GATC 5 cut(s) 149, 202, 304, 388, 726
BspACI CCGC 3 cut(s) 370, 376, 428
BspANI GGCC 2 cut(s) 329, 671
BspCNI CTCAG 4 cut(s) 132, 175, 515, 582
BspMAI CTGCAG 1 cut(s) 661
BspPI GGATC 2 cut(s) 157, 312
BspT104I TTCGAA 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 5 cut(s) 149, 202, 304, 388, 726
Bst4CI ACNGT 2 cut(s) 159, 219
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 624, 669, 687
BstDEI CTNAG 4 cut(s) 140, 183, 502, 590
BstDSI CCRYGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 5 cut(s) 152, 205, 307, 391, 729
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 5 cut(s) 149, 202, 304, 388, 726
BstMWI GCNNNNNNNGC 3 cut(s) 367, 659, 668
BstNSI RCATGY 3 cut(s) 293, 626, 689
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 2 cut(s) 149, 304
BstYI RGATCY 2 cut(s) 149, 304
BsuRI GGCC 2 cut(s) 329, 671
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 3 cut(s) 624, 669, 687
Cfr13I GGNCC 3 cut(s) 327, 343, 697
CseI GACGC 1 cut(s) 642
Csp6I GTAC 1 cut(s) 320
CviAII CATG 6 cut(s) 206, 290, 358, 431, 623, 686
CviJI RGCY 8 cut(s) 174, 301, 329, 355, 576, 667, 671, 704
CviKI_1 RGCY 8 cut(s) 174, 301, 329, 355, 576, 667, 671, 704
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 4 cut(s) 140, 183, 502, 590
DpnI GATC 5 cut(s) 151, 204, 306, 390, 728
DpnII GATC 5 cut(s) 149, 202, 304, 388, 726
Eco47I GGWCC 2 cut(s) 343, 697
Eco57I CTGAAG 1 cut(s) 728
FaeI CATG 6 cut(s) 209, 293, 361, 434, 626, 689
FatI CATG 6 cut(s) 205, 289, 357, 430, 622, 685
FauI CCCGC 1 cut(s) 369
FbaI TGATCA 2 cut(s) 202, 726
Fnu4HI GCNGC 1 cut(s) 660
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 660
FspBI CTAG 1 cut(s) 701
GluI GCNGC 1 cut(s) 660
GsuI CTGGAG 2 cut(s) 99, 347
HaeIII GGCC 2 cut(s) 329, 671
HgaI GACGC 1 cut(s) 642
Hin1II CATG 6 cut(s) 209, 293, 361, 434, 626, 689
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 6 cut(s) 42, 123, 232, 416, 442, 640
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 5 cut(s) 85, 184, 399, 505, 708
Hpy188III TCNNGA 8 cut(s) 101, 116, 268, 335, 364, 420, 556, 571
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 29, 90
HpyCH4III ACNGT 2 cut(s) 159, 219
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 6 cut(s) 33, 286, 659, 685, 689, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 367, 659, 668
HpyF3I CTNAG 4 cut(s) 140, 183, 502, 590
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 6 cut(s) 209, 293, 361, 434, 626, 689
Ksp22I TGATCA 2 cut(s) 202, 726
Kzo9I GATC 5 cut(s) 149, 202, 304, 388, 726
LmnI GCTCC 2 cut(s) 118, 366
LpnPI CCDG 9 cut(s) 86, 129, 253, 287, 377, 640, 653, 685, 715
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 2 cut(s) 100, 154
MaeI CTAG 1 cut(s) 701
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 3 cut(s) 311, 447, 563
MalI GATC 5 cut(s) 151, 204, 306, 390, 728
MboI GATC 5 cut(s) 149, 202, 304, 388, 726
MboII GAAGA 6 cut(s) 4, 241, 465, 472, 607, 721
MfeI CAATTG 2 cut(s) 134, 190
MflI RGATCY 2 cut(s) 149, 304
MluCI AATT 5 cut(s) 68, 134, 190, 380, 535
MlyI GAGTC 3 cut(s) 117, 226, 451
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 8 cut(s) 26, 356, 507, 511, 513, 578, 585, 671
MunI CAATTG 2 cut(s) 134, 190
MwoI GCNNNNNNNGC 3 cut(s) 367, 659, 668
NdeII GATC 5 cut(s) 149, 202, 304, 388, 726
NlaIII CATG 6 cut(s) 209, 293, 361, 434, 626, 689
NmuCI GTSAC 2 cut(s) 311, 447
NspI RCATGY 3 cut(s) 293, 626, 689
NspV TTCGAA 1 cut(s) 227
PaeI GCATGC 2 cut(s) 626, 689
PciI ACATGT 1 cut(s) 289
PfeI GAWTC 3 cut(s) 42, 416, 640
PkrI GCNGC 1 cut(s) 661
PleI GAGTC 3 cut(s) 117, 226, 450
PpsI GAGTC 3 cut(s) 117, 226, 450
PscI ACATGT 1 cut(s) 289
PspPI GGNCC 3 cut(s) 327, 343, 697
PstI CTGCAG 1 cut(s) 661
PsuI RGATCY 2 cut(s) 149, 304
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 5 cut(s) 149, 202, 304, 388, 726
Sau96I GGNCC 3 cut(s) 327, 343, 697
SchI GAGTC 3 cut(s) 117, 226, 451
SfaNI GCATC 2 cut(s) 100, 154
SfcI CTRYAG 1 cut(s) 657
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 2 cut(s) 343, 697
SmlI CTYRAG 2 cut(s) 488, 571
SmoI CTYRAG 2 cut(s) 488, 571
SphI GCATGC 2 cut(s) 626, 689
Sse9I AATT 5 cut(s) 68, 134, 190, 380, 535
SsiI CCGC 3 cut(s) 370, 376, 428
SspMI CTAG 1 cut(s) 701
TaaI ACNGT 2 cut(s) 159, 219
TaiI ACGT 1 cut(s) 527
TaqI TCGA 3 cut(s) 58, 227, 348
TaqII GACCGA 1 cut(s) 685
TasI AATT 5 cut(s) 68, 134, 190, 380, 535
TfiI GAWTC 3 cut(s) 42, 416, 640
TseFI GTSAC 2 cut(s) 311, 447
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 2 cut(s) 311, 447
TspDTI ATGAA 3 cut(s) 11, 494, 528
VpaK11BI GGWCC 2 cut(s) 343, 697
XapI RAATTY 1 cut(s) 535
XceI RCATGY 3 cut(s) 293, 626, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.