Rorug06G0096800

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006431
Physical Location & Seq
Reverse (-)
12924886 .. 12932368
7483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0096800.1

Sequence Viewer

Length: 3480 bp
ATGCCCCTCCCAAGACCCCATATTCCAACCCAGTCTTCCTTCCGCTTCGGTCTCTCCGACGCTCTCCTCGCCGACAAAGCAATCACATACCTCAAGCGCCACCCCCACAACCTCAACTCTCTCTCTTCCCATTTCACCCCTGAAGCCGCCTCCTGCTTACTCCTCAAATCCCAATTCGACCAAACCCTAACCCTAAAGTTCCTCAATTGGGCTCGCAGCCACCACCACCGCTTCTTCACCTTCCAGAGCAAGTGCCTCGCCCTCCACATCCTCACCCGCTTCAAGCTCTACAAGTCCGCCCAGGCCCTCGCCGAGGACGTCGCCGTCAACACCGTCGACGACAGGGGCAATTTGGTCTTTCAGTGCCTCACGGACTCGCTGCAGGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATAAAGCTATTAACATTGTTAACTTAGCTAAAGCTCATGGATTTATGCCCGGTGTGCTTTCGTATAATGCGATTTTAGATGCTGTGATTAGGTCTAGAGGGTCTGCTCAGTTTGCTGAGGAGGTTTTTAGTGAGATGACTAGGAATGGGGTTTCGCCGAATGTGTATACATATAACATTTTGATTAGGGGTTTCAGTGCGGCGGGGAATTTGGAAATGGTGTTGTATTTTTGGAGTGAAATGGAGAGGAATGGGTGTCTGCCGAATGTGGTTACGTATAATACGTTGATTGATGCTTATTGTAAGTTGAAGAGGATGGATGACGCGTTCGGATTGTTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTCGTATAATGTGGTGATTAATGGGTTGTGTCGGGAAGGGAGGATGAATGAGACTGGTCAGATTCTTGAGGAGATGAAAAGAAAGGGTTTTGTTCCTGACGAGGTGACAAATAATACACTCATTAGTGGGTATTGCAAGGAAGGTAATTTTCACCAAGCACTTGTGTTGCAAGAGGAGATGCGGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCATTGATCAATGCCATGTGTAAGGCTAAGAATTTGAATCGAGCAATGGAGTTTTTTGAGCAGATGCGTGTTAGAGGACTTCCTCCAAATGAGAGGACGTATACTACATTGATAGATGGCTTCGCCCAACAAGGGTTCTTAAATGAAGCTTACCGTCTTCTGAATGAAATGGTTGGTGGTGGATTTTCTCCTTCGGTTGTGACTTACAATGCCCTTATCAATGGATACTGCTTATTAGGCAGGATGGAAGAGGCAATGGGAATTGTACAAGATATGGTAGGGAAAGGGTTATCCCCTGATGTAGTAAGTTATAGTACTATTATCACTGGGTTTTGTCGGCATCAAGAATTGGAGAGTGCATTCCAAATGAAGATGGAGATGGTGGAGAAGGGTATATCACCCGATGCTGTTACCTATTCATCACTAATTCAAGGTGTCTGTCAGCAAGGGAGACTAGTTGAAGCTTGTGATCTCTTCCAAGAAATGATAAGTATGGGTTTGCGTCCTGATGAATTCACATACACAACCTTGATCAATGCTTACTGCAAGGAAGGGGATTTGAATAAGGCTCTTCAGTTGAATGACGAAATGATAAAGAAAGGTTTCCTACCTGATGTTGTGACCTACAGTGTGCTTATCAATGGACTTAACAAACAAGCTCGGACAAGAGAAGCAAAGAAACTTCTACTCAAGTTGTTCTATGATAACTCTGTCCCAGATGATGTCACATACAATACTCTAATAGAGAGCTGCACGAATGTTGAATTTAAGAGTGTGGTAGCCCTTGTAAAGGGATTCTGCATGAAGGGTTTGATGAAAGAAGCAGATCAAGTTTTTGAAACAGTGATTAAGAGGAAATACAAACCTAATGGAGCAGTTTATGACGTTATCATACATGGTCATTGTAAGGAAGGAAATGTTCAGAAGGCATTGAATCTGTACAAGGAAATGTTGCTTTCTGGTTATCTTCCTCATACTGTAACTGTTATTGCGCTGATTAAAGAACTTTTCACAGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACACTGAGGAGCTGTGAGCTTACTGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAACCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCAAGGATGGTCTCCTTCCAAATAGTGGAGCAAACGCTTGTGCAGGGGGGTGGTATGCCGAAGTGCATAATTATCTGAGTTTTGGTTGTTGGCATACAAATTGCTTTACTGAAGTTATGGTGGCTTGCTGCAATGAACCTTGTTCCTCCATTGCCATGTTCATTGGCCAATTTATTTGTGAAGATTCATCATTTACCACTGCACTTTCCTTCACTTGCTGGAAAGGTCCTGATGAATCTGTAATGCATATTTTCAAGTTATTAGCATACAAACACACTGAGAATTTTGATTATGAAGATGTCTGCAATTCCAGCTCGGCGGTTTTCGACTTGGTGGTGAAGTCTTACTCTCATTTGAATTTCGTTGATAAAGCTATTAACATTGCTAAGCTCATGGATTTATGCCTGGGTGTGGTGCACCGTGATATTAAGCCAGAGAACTTTTTGTATACTGCTAAGGATGAGAGTTCGCCATTGAAAGCCATTGACTTTGGCCTATCAGATTTTGCCAAACCAGATGAGAGGCTTAATGATATTGTCGGAAGTGCATACTACGTGGCTCCTGAGAGTCTGGAATTTTTTTGGGCGGTCTTGAAAGCTGATCCCAGTTTTGATGAAGCACCATGGCCTTCGTTATCTGTTGAAGCGAAGGACTTTGTCAAATGCTTATTAATTAAGGACCCTCGGAAGCGAATGACAGCTGCTCAAGCATTAAGTCATCCTTGGATGAGGAATTATAATGATGTTAAAGTGCCTCTTGATATTTTAATATTTAGACTCATGAAGATGTATATGCGATCGTCATCTCTTCGAAAGGCTGCTTTAAGGGCACTGTCTAAGACATTGACTGTGGAAGAACTCTTTTATCTGAAGGAGCAGTTTGCACTATTAGTACCGAATAAGAATGGCACTATCACTCTTGACAATATTAGAATGGCCCTAATGAAAAATGCTACAGACGCAATGAAGGGGTCTCACATTCCTGATCTTATTGCATCGCTAAATGCACTTCAATACAGAAGAATGGATTTTGAGGAGTTCTGTGCAGCTGCACTAAGTGTACATCAGCTTGAGGCACTTGATTGTTGGGAACAACATGCTCAATGTGCATATGAACTTTTCGAGAAGGATGGAAACAGGGCCATTGTCATTGAAGAACTTGCTTCAGAACTTGGGCTTGGTCCCTCCATTCCATTACATGTGGTTATCCATGACTGGATTAGGCACACTGATGGGAAACTAAGCTTCCTTGGATTAGCCGGACGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

1159

Amino Acids

130.19

Weight (kDa)

5.95

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 151 - 276 4.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 157 - 213 2.5e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 167 - 215 1.1e-12 PPR repeat family
PPR_3 PF13812 192 - 251 1.5e-15 Pentatricopeptide repeat domain
PPR_1 PF12854 199 - 231 7.1e-06 PPR repeat
PPR PF01535 206 - 236 3e-06 PPR repeat
PPR_2 PF13041 207 - 252 3.3e-15 PPR repeat family
PPR_3 PF13812 229 - 283 1.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 234 - 266 1.2e-13 PPR repeat
PPR_2 PF13041 238 - 287 1.3e-18 PPR repeat family
PPR PF01535 241 - 270 8.1e-08 PPR repeat
PPR_1 PF12854 269 - 302 4.6e-10 PPR repeat
PPR_2 PF13041 273 - 314 1.4e-11 PPR repeat family
PPR PF01535 276 - 306 1.1e-06 PPR repeat
PPR_long PF17177 292 - 405 3.5e-11 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 297 - 355 1.5e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 304 - 337 1.1e-09 PPR repeat
PPR_2 PF13041 308 - 357 3.7e-18 PPR repeat family
PPR PF01535 314 - 341 4.2e-06 PPR repeat
PPR_3 PF13812 332 - 383 4.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 339 - 372 4.4e-13 PPR repeat
PPR_2 PF13041 343 - 391 8e-19 PPR repeat family
PPR PF01535 346 - 376 3.9e-07 PPR repeat
TPR_24 PF23276 347 - 439 1.1e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 362 - 453 8.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 369 - 425 3.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 374 - 407 1.7e-11 PPR repeat
PPR PF01535 382 - 410 1.9e-06 PPR repeat
PPR_2 PF13041 384 - 426 6.1e-12 PPR repeat family
PPR_long PF17177 396 - 499 8.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 410 - 442 1.1e-10 PPR repeat
PPR_2 PF13041 413 - 462 2.1e-17 PPR repeat family
PPR PF01535 416 - 446 1.3e-08 PPR repeat
PPR_3 PF13812 437 - 493 4.9e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 444 - 477 7.5e-10 PPR repeat
PPR_2 PF13041 448 - 497 3.7e-17 PPR repeat family
PPR_long PF17177 465 - 562 8.8e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 479 - 511 4.9e-12 PPR repeat
PPR PF01535 486 - 516 1.6e-07 PPR repeat
PPR_2 PF13041 486 - 532 1.2e-16 PPR repeat family
TPR_24 PF23276 506 - 602 2.1e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 507 - 563 1.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 514 - 546 4.4e-13 PPR repeat
PPR_2 PF13041 521 - 566 1.3e-17 PPR repeat family
PPR PF01535 521 - 551 5.6e-08 PPR repeat
PPR_1 PF12854 636 - 666 4.6e-06 PPR repeat
PPR_2 PF13041 638 - 685 2.6e-08 PPR repeat family
Pkinase PF00069 873 - 927 3.5e-13 Protein kinase domain
Pkinase PF00069 937 - 979 5.1e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2946
AasI GACNNNNNNGTC 1 cut(s) 323
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 2234
AccI GTMKAC 4 cut(s) 336, 617, 1148, 2657
AccII CGCG 1 cut(s) 776
AclWI GGATC 1 cut(s) 2804
AcoI YGGCCR 2 cut(s) 2208, 2374
AcsI RAATTY 8 cut(s) 442, 658, 1078, 1559, 1811, 2491, 2566, 2783
AcuI CTGAAG 5 cut(s) 162, 1604, 2340, 3098, 3357
AcyI GRCGYC 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 3266
AfaI GTAC 5 cut(s) 1314, 1363, 1988, 3102, 3270
AfiI CCNNNNNNNGG 6 cut(s) 208, 313, 1179, 1837, 2234, 2620
AflIII ACRYGT 2 cut(s) 774, 3406
AhlI ACTAGT 1 cut(s) 1501
AjnI CCWGG 2 cut(s) 300, 2613
AjuI GAANNNNNNNTTGG 4 cut(s) 19, 51, 3369, 3401
AloI GAACNNNNNNTCC 2 cut(s) 761, 793
Alw21I GWGCWC 1 cut(s) 2628
Alw26I GTCTC 6 cut(s) 56, 872, 1029, 1492, 2225, 3186
Alw44I GTGCAC 1 cut(s) 2624
AlwI GGATC 1 cut(s) 2804
AoxI GGCC 7 cut(s) 303, 2208, 2374, 2701, 2834, 3144, 3348
ApaLI GTGCAC 1 cut(s) 2624
ApeKI GCWGC 8 cut(s) 216, 379, 1797, 2337, 2909, 3026, 3254, 3257
ApoI RAATTY 8 cut(s) 442, 658, 1078, 1559, 1811, 2491, 2566, 2783
AseI ATTAAT 2 cut(s) 846, 2879
Asp700I GAANNNNTTC 1 cut(s) 1649
AspLEI GCGC 2 cut(s) 99, 2041
AspS9I GGNCC 6 cut(s) 304, 2435, 2887, 3145, 3348, 3389
AsuC2I CCSGG 1 cut(s) 501
AsuII TTCGAA 1 cut(s) 3019
AvaII GGWCC 3 cut(s) 2435, 2887, 3389
BaeGI GKGCMC 2 cut(s) 2628, 3040
BalI TGGCCA 2 cut(s) 2210, 2376
BanII GRGCYC 1 cut(s) 214
BbsI GAAGAC 2 cut(s) 27, 1196
Bbv12I GWGCWC 1 cut(s) 2628
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 8 cut(s) 228, 366, 1784, 2324, 2896, 3013, 3244, 3266
BccI CCATC 9 cut(s) 760, 790, 1157, 1285, 1414, 1420, 2210, 3332, 3434
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 2 cut(s) 302, 2615
BciVI GTATCC 1 cut(s) 1265
BclI TGATCA 2 cut(s) 1053, 1578
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 6 cut(s) 56, 872, 1029, 1492, 2225, 3186
BcuI ACTAGT 1 cut(s) 1501
BfaI CTAG 3 cut(s) 546, 591, 1502
BfmI CTRYAG 3 cut(s) 380, 1672, 3162
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 373
BfuI GTATCC 1 cut(s) 1265
BlpI GCTNAGC 2 cut(s) 2130, 2595
BmcAI AGTACT 1 cut(s) 1363
Bme1390I CCNGG 3 cut(s) 302, 501, 2615
Bme18I GGWCC 3 cut(s) 2435, 2887, 3389
BmgT120I GGNCC 6 cut(s) 304, 2435, 2887, 3145, 3348, 3389
BmiI GGNNCC 4 cut(s) 816, 2769, 2889, 3391
BmrFI CCNGG 3 cut(s) 302, 501, 2615
BmrI ACTGGG 3 cut(s) 25, 1383, 2808
BmsI GCATC 9 cut(s) 520, 733, 996, 1101, 1396, 1441, 2116, 2170, 3212
BmuI ACTGGG 3 cut(s) 25, 1383, 2808
BpiI GAAGAC 2 cut(s) 27, 1196
Bpu10I CCTNAGC 2 cut(s) 567, 2664
Bpu1102I GCTNAGC 2 cut(s) 2130, 2595
Bpu14I TTCGAA 1 cut(s) 3019
BpuEI CTTGAG 5 cut(s) 77, 914, 1721, 2898, 3299
BpuMI CCSGG 1 cut(s) 501
Bsa29I ATCGAT 1 cut(s) 794
BsaAI YACGTR 2 cut(s) 726, 2764
BsaBI GATNNNNATC 1 cut(s) 3010
BsaHI GRCGYC 1 cut(s) 318
BsaI GGTCTC 3 cut(s) 56, 2225, 3186
BsaJI CCNNGG 9 cut(s) 300, 312, 2197, 2211, 2614, 2831, 2891, 2930, 3457
Bsc4I CCNNNNNNNGG 6 cut(s) 208, 313, 1179, 1837, 2234, 2620
Bse1I ACTGG 5 cut(s) 31, 886, 1378, 2814, 3428
Bse3DI GCAATG 6 cut(s) 1098, 1308, 2347, 2358, 2589, 3177
Bse8I GATNNNNATC 1 cut(s) 3010
BseBI CCWGG 2 cut(s) 302, 2615
BseCI ATCGAT 1 cut(s) 794
BseDI CCNNGG 9 cut(s) 300, 312, 2197, 2211, 2614, 2831, 2891, 2930, 3457
BseJI GATNNNNATC 1 cut(s) 3010
BseLI CCNNNNNNNGG 6 cut(s) 208, 313, 1179, 1837, 2234, 2620
BseMI GCAATG 6 cut(s) 1098, 1308, 2347, 2358, 2589, 3177
BseMII CTCAG 8 cut(s) 558, 572, 2072, 2096, 2121, 2276, 2478, 2763
BseNI ACTGG 5 cut(s) 31, 886, 1378, 2814, 3428
BseRI GAGGAG 7 cut(s) 56, 152, 584, 911, 1016, 2122, 3257
BseSI GKGCMC 2 cut(s) 2628, 3040
BseXI GCAGC 8 cut(s) 228, 366, 1784, 2324, 2896, 3013, 3244, 3266
BsgI GTGCAG 5 cut(s) 1783, 2271, 2394, 3243, 3273
Bsh1236I CGCG 1 cut(s) 776
Bsh1285I CGRYCG 1 cut(s) 3008
BshFI GGCC 7 cut(s) 305, 2210, 2376, 2703, 2836, 3146, 3350
BshVI ATCGAT 1 cut(s) 794
BsiEI CGRYCG 1 cut(s) 3008
BsiHKAI GWGCWC 1 cut(s) 2628
BsiSI CCGG 2 cut(s) 501, 3468
BslFI GGGAC 2 cut(s) 1745, 3375
BslI CCNNNNNNNGG 6 cut(s) 208, 313, 1179, 1837, 2234, 2620
BsmAI GTCTC 6 cut(s) 56, 872, 1029, 1492, 2225, 3186
BsmFI GGGAC 2 cut(s) 1745, 3375
BsmI GAATGC 1 cut(s) 1406
BsnI GGCC 7 cut(s) 305, 2210, 2376, 2703, 2836, 3146, 3350
Bso31I GGTCTC 3 cut(s) 56, 2225, 3186
Bsp119I TTCGAA 1 cut(s) 3019
Bsp1286I GDGCHC 3 cut(s) 214, 2628, 3040
Bsp1407I TGTACA 3 cut(s) 1312, 1986, 3268
Bsp143I GATC 8 cut(s) 791, 1053, 1516, 1578, 1873, 2809, 3005, 3193
Bsp1720I GCTNAGC 2 cut(s) 2130, 2595
Bsp19I CCATGG 1 cut(s) 2831
BspANI GGCC 7 cut(s) 305, 2210, 2376, 2703, 2836, 3146, 3350
BspCNI CTCAG 8 cut(s) 559, 571, 2073, 2097, 2122, 2277, 2479, 2764
BspDI ATCGAT 1 cut(s) 794
BspFNI CGCG 1 cut(s) 776
BspHI TCATGA 1 cut(s) 2988
BspLI GGNNCC 4 cut(s) 816, 2769, 2889, 3391
BspMAI CTGCAG 1 cut(s) 384
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 1 cut(s) 2804
BspQI GCTCTTC 1 cut(s) 1623
BspT104I TTCGAA 1 cut(s) 3019
BspTNI GGTCTC 3 cut(s) 56, 2225, 3186
BsrDI GCAATG 6 cut(s) 1098, 1308, 2347, 2358, 2589, 3177
BsrGI TGTACA 3 cut(s) 1312, 1986, 3268
BsrI ACTGG 5 cut(s) 31, 886, 1378, 2814, 3428
BssECI CCNNGG 9 cut(s) 300, 312, 2197, 2211, 2614, 2831, 2891, 2930, 3457
BssMI GATC 8 cut(s) 791, 1053, 1516, 1578, 1873, 2809, 3005, 3193
BssNAI GTATAC 3 cut(s) 618, 1149, 2658
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 5 cut(s) 2197, 2211, 2831, 2930, 3457
Bst1107I GTATAC 3 cut(s) 618, 1149, 2658
Bst2UI CCWGG 2 cut(s) 302, 2615
Bst4CI ACNGT 9 cut(s) 334, 1202, 1676, 1891, 2026, 2032, 2630, 3042, 3058
Bst6I CTCTTC 6 cut(s) 130, 755, 1290, 1526, 1623, 3021
BstACI GRCGYC 1 cut(s) 318
BstAUI TGTACA 3 cut(s) 1312, 1986, 3268
BstBAI YACGTR 2 cut(s) 726, 2764
BstBI TTCGAA 1 cut(s) 3019
BstC8I GCNNGC 3 cut(s) 214, 2136, 2335
BstDSI CCRYGG 1 cut(s) 2831
BstENI CCTNNNNNAGG 2 cut(s) 311, 1835
BstFNI CGCG 1 cut(s) 776
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 2041
BstKTI GATC 8 cut(s) 794, 1056, 1519, 1581, 1876, 2812, 3008, 3196
BstMAI GTCTC 6 cut(s) 56, 872, 1029, 1492, 2225, 3186
BstMBI GATC 8 cut(s) 791, 1053, 1516, 1578, 1873, 2809, 3005, 3193
BstMCI CGRYCG 1 cut(s) 3008
BstNI CCWGG 2 cut(s) 302, 2615
BstNSI RCATGY 2 cut(s) 3308, 3410
BstSCI CCNGG 3 cut(s) 300, 499, 2613
BstSFI CTRYAG 3 cut(s) 380, 1672, 3162
BstSLI GKGCMC 2 cut(s) 2628, 3040
BstSNI TACGTA 1 cut(s) 726
BstUI CGCG 1 cut(s) 776
BstV1I GCAGC 8 cut(s) 228, 366, 1784, 2324, 2896, 3013, 3244, 3266
BstV2I GAAGAC 2 cut(s) 27, 1196
BstZ17I GTATAC 3 cut(s) 618, 1149, 2658
Bsu15I ATCGAT 1 cut(s) 794
BsuI GTATCC 1 cut(s) 1265
BsuRI GGCC 7 cut(s) 305, 2210, 2376, 2703, 2836, 3146, 3350
BsuTUI ATCGAT 1 cut(s) 794
BtgI CCRYGG 1 cut(s) 2831
BtgZI GCGATG 1 cut(s) 3189
BtsI GCAGTG 1 cut(s) 2406
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 3 cut(s) 214, 2136, 2335
CciI TCATGA 1 cut(s) 2988
CfoI GCGC 2 cut(s) 99, 2041
Cfr13I GGNCC 6 cut(s) 304, 2435, 2887, 3145, 3348, 3389
ClaI ATCGAT 1 cut(s) 794
CseI GACGC 4 cut(s) 68, 782, 1538, 3176
Csp6I GTAC 5 cut(s) 1313, 1362, 1987, 3101, 3269
CviQI GTAC 5 cut(s) 1313, 1362, 1987, 3101, 3269
DpnI GATC 8 cut(s) 793, 1055, 1518, 1580, 1875, 2811, 3007, 3195
DpnII GATC 8 cut(s) 791, 1053, 1516, 1578, 1873, 2809, 3005, 3193
DraIII CACNNNGTG 1 cut(s) 3266
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 2 cut(s) 2208, 2374
Eam1104I CTCTTC 6 cut(s) 130, 755, 1290, 1526, 1623, 3021
EarI CTCTTC 6 cut(s) 130, 755, 1290, 1526, 1623, 3021
EciI GGCGGA 1 cut(s) 286
Eco105I TACGTA 1 cut(s) 726
Eco130I CCWWGG 5 cut(s) 2197, 2211, 2831, 2930, 3457
Eco24I GRGCYC 1 cut(s) 214
Eco31I GGTCTC 3 cut(s) 56, 2225, 3186
Eco47I GGWCC 3 cut(s) 2435, 2887, 3389
Eco57I CTGAAG 5 cut(s) 162, 1604, 2340, 3098, 3357
EcoNI CCTNNNNNAGG 2 cut(s) 311, 1835
EcoO109I RGGNCCY 3 cut(s) 304, 2435, 2887
EcoRI GAATTC 1 cut(s) 1559
EcoRII CCWGG 2 cut(s) 300, 2613
EcoT14I CCWWGG 5 cut(s) 2197, 2211, 2831, 2930, 3457
EcoT22I ATGCAT 1 cut(s) 2457
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 5 cut(s) 2197, 2211, 2831, 2930, 3457
FalI AAGNNNNNCTT 4 cut(s) 2914, 2946, 2949, 2981
FaqI GGGAC 2 cut(s) 1745, 3375
FauI CCCGC 2 cut(s) 284, 646
FauNDI CATATG 1 cut(s) 3319
FbaI TGATCA 2 cut(s) 1053, 1578
FblI GTMKAC 4 cut(s) 336, 617, 1148, 2657
FriOI GRGCYC 1 cut(s) 214
FspBI CTAG 3 cut(s) 546, 591, 1502
GlaI GCGC 2 cut(s) 98, 2040
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 7 cut(s) 305, 2210, 2376, 2703, 2836, 3146, 3350
HapII CCGG 2 cut(s) 501, 3468
HgaI GACGC 4 cut(s) 68, 782, 1538, 3176
HhaI GCGC 2 cut(s) 99, 2041
Hin1I GRCGYC 1 cut(s) 318
Hin6I GCGC 2 cut(s) 97, 2039
HinP1I GCGC 2 cut(s) 97, 2039
HincII GTYRAC 3 cut(s) 328, 337, 472
HindII GTYRAC 3 cut(s) 328, 337, 472
HindIII AAGCTT 3 cut(s) 1194, 1509, 3451
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 2 cut(s) 501, 3468
Hpy166II GTNNAC 8 cut(s) 328, 337, 472, 618, 1149, 2626, 2658, 3269
Hpy8I GTNNAC 8 cut(s) 328, 337, 472, 618, 1149, 2626, 2658, 3269
Hpy99I CGWCG 4 cut(s) 62, 323, 338, 341
HpyCH4III ACNGT 9 cut(s) 334, 1202, 1676, 1891, 2026, 2032, 2630, 3042, 3058
HpyCH4IV ACGT 7 cut(s) 318, 725, 734, 1145, 1932, 2763, 3472
HpySE526I ACGT 7 cut(s) 318, 725, 734, 1145, 1932, 2763, 3472
Hsp92I GRCGYC 1 cut(s) 318
HspAI GCGC 2 cut(s) 97, 2039
Ksp22I TGATCA 2 cut(s) 1053, 1578
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 8 cut(s) 791, 1053, 1516, 1578, 1873, 2809, 3005, 3193
LguI GCTCTTC 1 cut(s) 1623
LmnI GCTCC 6 cut(s) 814, 1919, 2109, 2237, 2773, 3082
Lsp1109I GCAGC 8 cut(s) 228, 366, 1784, 2324, 2896, 3013, 3244, 3266
LweI GCATC 9 cut(s) 520, 733, 996, 1101, 1396, 1441, 2116, 2170, 3212
MaeI CTAG 3 cut(s) 546, 591, 1502
MaeII ACGT 7 cut(s) 318, 725, 734, 1145, 1932, 2763, 3472
MaeIII GTNAC 8 cut(s) 721, 931, 1036, 1246, 1456, 1666, 1771, 2026
MalI GATC 8 cut(s) 793, 1055, 1518, 1580, 1875, 2811, 3007, 3195
MboI GATC 8 cut(s) 791, 1053, 1516, 1578, 1873, 2809, 3005, 3193
MfeI CAATTG 1 cut(s) 205
MhlI GDGCHC 3 cut(s) 214, 2628, 3040
MlsI TGGCCA 2 cut(s) 2210, 2376
MluI ACGCGT 1 cut(s) 774
MluNI TGGCCA 2 cut(s) 2210, 2376
MlyI GAGTC 4 cut(s) 368, 2092, 2785, 2979
MmeI TCCRAC 3 cut(s) 50, 81, 2728
Mox20I TGGCCA 2 cut(s) 2210, 2376
Mph1103I ATGCAT 1 cut(s) 2457
MroXI GAANNNNTTC 1 cut(s) 1649
MscI TGGCCA 2 cut(s) 2210, 2376
MslI CAYNNNNRTG 3 cut(s) 2363, 2993, 3438
Msp20I TGGCCA 2 cut(s) 2210, 2376
MspA1I CMGCKG 2 cut(s) 2909, 3257
MspI CCGG 2 cut(s) 501, 3468
MspR9I CCNGG 3 cut(s) 302, 501, 2615
MunI CAATTG 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 1406
MvaI CCWGG 2 cut(s) 302, 2615
MvnI CGCG 1 cut(s) 776
NciI CCSGG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 2831
NdeI CATATG 1 cut(s) 3319
NdeII GATC 8 cut(s) 791, 1053, 1516, 1578, 1873, 2809, 3005, 3193
NlaIV GGNNCC 4 cut(s) 816, 2769, 2889, 3391
NmeAIII GCCGAG 3 cut(s) 337, 380, 2504
NmuCI GTSAC 5 cut(s) 931, 1036, 1246, 1666, 1771
NsiI ATGCAT 1 cut(s) 2457
NspI RCATGY 2 cut(s) 3308, 3410
NspV TTCGAA 1 cut(s) 3019
PacI TTAATTAA 1 cut(s) 2883
PagI TCATGA 1 cut(s) 2988
PciI ACATGT 1 cut(s) 3406
PciSI GCTCTTC 1 cut(s) 1623
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 315, 518, 731
PctI GAATGC 1 cut(s) 1406
PdmI GAANNNNTTC 1 cut(s) 1649
PfeI GAWTC 6 cut(s) 889, 1084, 1842, 1981, 2393, 2444
PflFI GACNNNGTC 1 cut(s) 2864
PflMI CCANNNNNTGG 1 cut(s) 2234
Ple19I CGATCG 1 cut(s) 3008
PleI GAGTC 4 cut(s) 368, 2091, 2784, 2979
PpsI GAGTC 4 cut(s) 368, 2091, 2784, 2979
Ppu21I YACGTR 2 cut(s) 726, 2764
PpuMI RGGWCCY 2 cut(s) 2435, 2887
PscI ACATGT 1 cut(s) 3406
PshBI ATTAAT 2 cut(s) 846, 2879
PsiI TTATAA 1 cut(s) 2946
Psp5II RGGWCCY 2 cut(s) 2435, 2887
Psp6I CCWGG 2 cut(s) 300, 2613
PspGI CCWGG 2 cut(s) 300, 2613
PspN4I GGNNCC 4 cut(s) 816, 2769, 2889, 3391
PspPI GGNCC 6 cut(s) 304, 2435, 2887, 3145, 3348, 3389
PspPPI RGGWCCY 2 cut(s) 2435, 2887
PstI CTGCAG 1 cut(s) 384
PsyI GACNNNGTC 1 cut(s) 2864
PvuI CGATCG 1 cut(s) 3008
PvuII CAGCTG 2 cut(s) 2909, 3257
RsaI GTAC 5 cut(s) 1314, 1363, 1988, 3102, 3270
RsaNI GTAC 5 cut(s) 1313, 1362, 1987, 3101, 3269
RseI CAYNNNNRTG 3 cut(s) 2363, 2993, 3438
SalI GTCGAC 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 1623
Sau3AI GATC 8 cut(s) 791, 1053, 1516, 1578, 1873, 2809, 3005, 3193
Sau96I GGNCC 6 cut(s) 304, 2435, 2887, 3145, 3348, 3389
ScaI AGTACT 1 cut(s) 1363
SchI GAGTC 4 cut(s) 368, 2092, 2785, 2979
ScrFI CCNGG 3 cut(s) 302, 501, 2615
SduI GDGCHC 3 cut(s) 214, 2628, 3040
SfaNI GCATC 9 cut(s) 520, 733, 996, 1101, 1396, 1441, 2116, 2170, 3212
SfcI CTRYAG 3 cut(s) 380, 1672, 3162
SfuI TTCGAA 1 cut(s) 3019
SgrDI CGTCGACG 1 cut(s) 335
SinI GGWCC 3 cut(s) 2435, 2887, 3389
SmiMI CAYNNNNRTG 3 cut(s) 2363, 2993, 3438
SmlI CTYRAG 5 cut(s) 92, 893, 1736, 2913, 3278
SmoI CTYRAG 5 cut(s) 92, 893, 1736, 2913, 3278
SnaBI TACGTA 1 cut(s) 726
SpeI ACTAGT 1 cut(s) 1501
SspI AATATT 2 cut(s) 2979, 3136
SspMI CTAG 3 cut(s) 546, 591, 1502
StyD4I CCNGG 3 cut(s) 300, 499, 2613
StyI CCWWGG 5 cut(s) 2197, 2211, 2831, 2930, 3457
TaaI ACNGT 9 cut(s) 334, 1202, 1676, 1891, 2026, 2032, 2630, 3042, 3058
TaiI ACGT 7 cut(s) 321, 728, 737, 1148, 1935, 2766, 3475
TaqI TCGA 8 cut(s) 177, 336, 411, 794, 1087, 2535, 3019, 3330
TaqII GACCGA 1 cut(s) 38
TatI WGTACW 4 cut(s) 1312, 1361, 1986, 3268
TauI GCSGC 2 cut(s) 149, 653
TfiI GAWTC 6 cut(s) 889, 1084, 1842, 1981, 2393, 2444
TseFI GTSAC 5 cut(s) 931, 1036, 1246, 1666, 1771
TseI GCWGC 8 cut(s) 216, 379, 1797, 2337, 2909, 3026, 3254, 3257
Tsp45I GTSAC 5 cut(s) 931, 1036, 1246, 1666, 1771
TspGWI ACGGA 1 cut(s) 386
Tth111I GACNNNGTC 1 cut(s) 2864
Van91I CCANNNNNTGG 1 cut(s) 2234
VneI GTGCAC 1 cut(s) 2624
VpaK11BI GGWCC 3 cut(s) 2435, 2887, 3389
VspI ATTAAT 2 cut(s) 846, 2879
XagI CCTNNNNNAGG 2 cut(s) 311, 1835
XapI RAATTY 8 cut(s) 442, 658, 1078, 1559, 1811, 2491, 2566, 2783
XbaI TCTAGA 1 cut(s) 545
XceI RCATGY 2 cut(s) 3308, 3410
XmiI GTMKAC 4 cut(s) 336, 617, 1148, 2657
XmnI GAANNNNTTC 1 cut(s) 1649
XspI CTAG 3 cut(s) 546, 591, 1502
ZraI GACGTC 1 cut(s) 319
ZrmI AGTACT 1 cut(s) 1363
Zsp2I ATGCAT 1 cut(s) 2457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.