RchiOBHm_Chr7g0208291

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003066
Physical Location & Seq
Forward (+)
25722855 .. 25726142
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18641

Sequence Viewer

Length: 741 bp
ATGGGAATTTTGGCATCCTACAAAAGCAACAGGACTAGTCTCCAACTCTCCATCCCAAAAAGCAAAAGCACCAACATGACAGTAGACAGCGCCACCATGGAAGACATGGAAGCCAAGGCCGAGCAGCTCGGTATCCAATTCTCCTCCATAGACTTGAACTCTGCACACCCACCTCACTTTAATTTCAGTGAATGCCAAGAAGTGTTTTACGACGACAACGGTTTCATCCCCAATATTGAGTTTGGGAGTGTGATCGTGGTTAATAACCTTCCCATTGTGGAGGCAGAGATGGCCCAGGAGCTCGAAAGCGAGATTCGGGTGGTGTTTAGTGAAGTTGGTGTTATTAAAGAAGATGGGTTTTCGATGCCTGTGAATCCCAGCAGCCAAGAAACCTTGGGTCATTGTTTCATAGAGTTTAATTCTCGTCAGGAAGCCGCACTTGCTAGGAGCACGAGAGATGGATACAAGTTTGGTAACTGCAAGTTGTCAGTAAGCCTCTATGATGCCTTTGGCAGTGTAGTTGCTACCCCTGACATGGGGACTTATTTAGAGACTAATGCATCCTTTTGTGGGTCCTCAAGGTATCCAGGGTCTCCTTCCTTGCTTAGTCCTGTAACAGAGGAAGACGAAGAACCCGTTCATAGTGATGAAACTAGTGCAGATGACCACGATGACATAATGCAGTGGAGTGAGCAAGACAATTATATGAGCAGTGAGGAATTTAGGGAAGTCATTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
RRM_1 eIF2A

Protein Analysis

246

Amino Acids

27.27

Weight (kDa)

4.23

Isoelectric Point (pI)

57.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 102 - 162 6.3e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 435
AcsI RAATTY 2 cut(s) 6, 719
AfiI CCNNNNNNNGG 3 cut(s) 535, 536, 570
AgsI TTSAA 2 cut(s) 157, 737
AhlI ACTAGT 2 cut(s) 35, 653
AjnI CCWGG 2 cut(s) 294, 586
AluBI AGCT 2 cut(s) 127, 301
AluI AGCT 2 cut(s) 127, 301
Alw21I GWGCWC 2 cut(s) 303, 452
Alw26I GTCTC 3 cut(s) 44, 545, 597
AoxI GGCC 2 cut(s) 117, 291
ApeKI GCWGC 2 cut(s) 124, 381
ApoI RAATTY 2 cut(s) 6, 719
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 292, 573
AvaII GGWCC 1 cut(s) 573
BanII GRGCYC 1 cut(s) 303
BauI CACGAG 1 cut(s) 451
BbsI GAAGAC 2 cut(s) 108, 630
Bbv12I GWGCWC 2 cut(s) 303, 452
BbvI GCAGC 2 cut(s) 136, 393
BccI CCATC 4 cut(s) 59, 283, 347, 452
BciT130I CCWGG 2 cut(s) 296, 588
BciVI GTATCC 3 cut(s) 143, 455, 594
BcoDI GTCTC 3 cut(s) 44, 545, 597
BcuI ACTAGT 2 cut(s) 35, 653
BfaI CTAG 3 cut(s) 36, 444, 654
BfoI RGCGCY 1 cut(s) 93
BfuI GTATCC 3 cut(s) 143, 455, 594
BisI GCNGC 3 cut(s) 125, 382, 435
BlsI GCNGC 3 cut(s) 126, 383, 436
Bme1390I CCNGG 2 cut(s) 296, 588
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 292, 573
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 2 cut(s) 296, 588
BmsI GCATC 4 cut(s) 23, 354, 493, 569
BpiI GAAGAC 2 cut(s) 108, 630
BpuEI CTTGAG 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 5 cut(s) 96, 114, 294, 393, 587
Bsc4I CCNNNNNNNGG 3 cut(s) 535, 536, 570
BseBI CCWGG 2 cut(s) 296, 588
BseDI CCNNGG 5 cut(s) 96, 114, 294, 393, 587
BseGI GGATG 4 cut(s) 14, 51, 225, 560
BseLI CCNNNNNNNGG 3 cut(s) 535, 536, 570
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 136, 393
BseYI CCCAGC 1 cut(s) 377
BsgI GTGCAG 2 cut(s) 147, 678
BshFI GGCC 2 cut(s) 119, 293
BsiHKAI GWGCWC 2 cut(s) 303, 452
BslFI GGGAC 1 cut(s) 553
BslI CCNNNNNNNGG 3 cut(s) 535, 536, 570
BsmAI GTCTC 3 cut(s) 44, 545, 597
BsmFI GGGAC 1 cut(s) 553
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 2 cut(s) 119, 293
Bso31I GGTCTC 1 cut(s) 597
Bsp1286I GDGCHC 2 cut(s) 303, 452
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 1 cut(s) 435
BspANI GGCC 2 cut(s) 119, 293
BspLI GGNNCC 1 cut(s) 574
BspTNI GGTCTC 1 cut(s) 597
BssECI CCNNGG 5 cut(s) 96, 114, 294, 393, 587
BssMI GATC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 451
BssT1I CCWWGG 3 cut(s) 96, 114, 393
Bst2BI CACGAG 1 cut(s) 451
Bst2UI CCWGG 2 cut(s) 296, 588
Bst4CI ACNGT 2 cut(s) 82, 221
BstDEI CTNAG 1 cut(s) 605
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 4 cut(s) 14, 51, 225, 560
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 3 cut(s) 44, 545, 597
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 290, 440
BstNI CCWGG 2 cut(s) 296, 588
BstSCI CCNGG 2 cut(s) 294, 586
BstV1I GCAGC 2 cut(s) 136, 393
BstV2I GAAGAC 2 cut(s) 108, 630
BsuI GTATCC 3 cut(s) 143, 455, 594
BsuRI GGCC 2 cut(s) 119, 293
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 4 cut(s) 14, 51, 225, 560
BtsI GCAGTG 3 cut(s) 520, 689, 718
BtsIMutI CAGTG 4 cut(s) 193, 520, 689, 718
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 292, 573
CviAII CATG 4 cut(s) 76, 97, 106, 535
CviJI RGCY 8 cut(s) 113, 119, 127, 293, 301, 384, 434, 495
CviKI_1 RGCY 8 cut(s) 113, 119, 127, 293, 301, 384, 434, 495
DdeI CTNAG 1 cut(s) 605
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 3 cut(s) 96, 114, 393
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 573
EcoRII CCWGG 2 cut(s) 294, 586
EcoT14I CCWWGG 3 cut(s) 96, 114, 393
EcoT22I ATGCAT 1 cut(s) 562
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 3 cut(s) 96, 114, 393
FaeI CATG 4 cut(s) 79, 100, 109, 538
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 1 cut(s) 553
FatI CATG 4 cut(s) 75, 96, 105, 534
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 125, 382, 435
FokI GGATG 3 cut(s) 38, 212, 547
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 125, 382, 435
FspBI CTAG 3 cut(s) 36, 444, 654
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 125, 382, 435
GsaI CCCAGC 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 119, 293
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 79, 100, 109, 538
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 2 cut(s) 313, 373
Hpy166II GTNNAC 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 278, 606
HpyCH4III ACNGT 2 cut(s) 82, 221
HpyCH4V TGCA 5 cut(s) 164, 480, 560, 659, 682
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 440
HpyF3I CTNAG 1 cut(s) 605
Hsp92II CATG 4 cut(s) 79, 100, 109, 538
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 298, 447
Lsp1109I GCAGC 2 cut(s) 136, 393
LweI GCATC 4 cut(s) 23, 354, 493, 569
MaeI CTAG 3 cut(s) 36, 444, 654
MaeIII GTNAC 2 cut(s) 473, 613
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 4 cut(s) 113, 362, 635, 641
MhlI GDGCHC 2 cut(s) 303, 452
MluCI AATT 6 cut(s) 6, 137, 181, 418, 700, 719
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 7 cut(s) 154, 183, 274, 506, 586, 613, 709
Mph1103I ATGCAT 1 cut(s) 562
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 4 cut(s) 180, 261, 345, 417
MslI CAYNNNNRTG 2 cut(s) 74, 645
MspR9I CCNGG 2 cut(s) 296, 588
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 2 cut(s) 296, 588
MwoI GCNNNNNNNGC 2 cut(s) 290, 440
NcoI CCATGG 1 cut(s) 96
NdeII GATC 1 cut(s) 252
NlaIII CATG 4 cut(s) 79, 100, 109, 538
NlaIV GGNNCC 1 cut(s) 574
NmeAIII GCCGAG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 633
PctI GAATGC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 2 cut(s) 313, 373
PkrI GCNGC 3 cut(s) 126, 383, 436
PpuMI RGGWCCY 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 573
Psp6I CCWGG 2 cut(s) 294, 586
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 2 cut(s) 294, 586
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 2 cut(s) 292, 573
PspPPI RGGWCCY 1 cut(s) 573
RseI CAYNNNNRTG 2 cut(s) 74, 645
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 4 cut(s) 180, 261, 345, 417
SatI GCNGC 3 cut(s) 125, 382, 435
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 292, 573
ScrFI CCNGG 2 cut(s) 296, 588
SduI GDGCHC 2 cut(s) 303, 452
SetI ASST 6 cut(s) 129, 175, 270, 303, 395, 584
SfaNI GCATC 4 cut(s) 23, 354, 493, 569
SinI GGWCC 1 cut(s) 573
SmiMI CAYNNNNRTG 2 cut(s) 74, 645
SmlI CTYRAG 1 cut(s) 577
SmoI CTYRAG 1 cut(s) 577
SpeI ACTAGT 2 cut(s) 35, 653
Sse9I AATT 6 cut(s) 6, 137, 181, 418, 700, 719
SsiI CCGC 1 cut(s) 435
SspI AATATT 1 cut(s) 235
SspMI CTAG 3 cut(s) 36, 444, 654
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 294, 586
StyI CCWWGG 3 cut(s) 96, 114, 393
TaaI ACNGT 2 cut(s) 82, 221
TaqI TCGA 2 cut(s) 303, 362
TasI AATT 6 cut(s) 6, 137, 181, 418, 700, 719
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 2 cut(s) 313, 373
Tru1I TTAA 4 cut(s) 180, 261, 345, 417
Tru9I TTAA 4 cut(s) 180, 261, 345, 417
TscAI CASTG 4 cut(s) 193, 520, 689, 718
TseI GCWGC 2 cut(s) 124, 381
TspDTI ATGAA 4 cut(s) 214, 397, 629, 663
TspRI CASTG 4 cut(s) 193, 520, 689, 718
VpaK11BI GGWCC 1 cut(s) 573
XapI RAATTY 2 cut(s) 6, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 3 cut(s) 36, 444, 654
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.