Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003066

Physical Location & Seq

Genomic Coordinates Reverse (-)

8607125 .. 8608663

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0101500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTTTTCCGGTGATTGATCTGAATCAGTTTCCAGATCCTGAAGGGTACAAGAGGCTGAGGGAAGCATCAGAGCAATGGGGTTGCTTCAGGCTAGTCAACCACAAGATCCCATTGTCTCTCATGTCAGAGATGAAGAAGGTGGTCAGATCTCTTCTTGATCTGCCCACGGAGATCAAGAAGAACAACACTGATGTCATATATGGCAGTGGCTACGTCGCACCCAGCAAGGTCAACCCTCTCAATGAGGGTTTGGGTCTCTGTTACTTGGGATCATCTGAGACTGTGCACACCTTTTGCTCTCAGTTGGGTGCTTCTTCCTACCAGAGAGAGGTAATAGAGAAGTATGCAGAAGCAGTTTATGAGCAGATGATGGATTTAGGGGATAAGTTGGCACAGAGTTTTGGGCTGCAGAGTGATTTTCTGAAGGAATGGCTGTGCCAGTTTAGGTTTAACAAGTACAACTTCACTTCCGAATCCGTGGGATCTCCCGGACTTGAGCTACACACCGATTCGGGATTTCTGACCATTCTTCAAGATGATGAAAGTGTTGGTGGTCTGGAAGTGATGGACAGGCAGTCTGGTGCTTTGGTACCAGTTGATCCTTGTCCAGGCACTTTCGTTGTCAATGTTGGAGACACTGCTAAGGCATGGAGCAATGGAAGGCTGTGCAATGGGAGGCACAGAGTGCAATGCAAGGAGGGCAGCGTTCGAGTCTCCATTGCTTTTCTTCTGTTGGGACCAAAGGAGGAAGCAGTGGAAGCCCCTCTGGAATTTGTTGATTCGGAGCACCCACGTCTCTATGTCCCTTTCACTTATGAAGAATTCAGAAAGATCAGGCTCTCCAAACATTTGCGAGATGGTGATGCTCTTGAACTTGTGCGCATCAAGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF2A

Protein Analysis

298

Amino Acids

33.46

Weight (kDa)

5.39

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	4 - 65	3.1e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	148 - 244	1.3e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003066)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21160 FvH4_5g21160
malus_domestica	MD06G1040600.v1.1
prunus_persica	Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1
pyrus_communis	pycom06g03380
rosa_chinensis	RchiOBHm_Chr1g0379241 RchiOBHm_Chr7g0208291 RchiOBHm_Chr7g0235341
rosa_laevigata	RLG00000003230 RLG00000003232
rosa_multiflora	Rmu_co7962606.1_g000001 Rmu_sc0040203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101090 Rroxscaffold_2G00122260 Rroxscaffold_3G00250610 Rroxscaffold_5G00350460 Rroxscaffold_5G00361300
rosa_rugosa	Rorug02G0101400 Rorug02G0101500 Rorug02G0101600 Rorug07G0102700.1 Rorug07G0103000
rosa_samantha	Rh4DG103100 Rh5DG324000 Rh7AG237100 Rh7AG237300 Rh7AG445100 Rh7BG232600 Rh7BG232800 Rh7DG243100 Rh7DG243300
rosa_wichuraiana	Rw7G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	884
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AclWI	GGATC	5 cut(s)	32, 103, 280, 493, 596
AcsI	RAATTY	2 cut(s)	773, 824
AcuI	CTGAAG	3 cut(s)	63, 73, 446
AdeI	CACNNNGTG	1 cut(s)	688
AfaI	GTAC	3 cut(s)	50, 461, 594
AfiI	CCNNNNNNNGG	2 cut(s)	331, 611
AgsI	TTSAA	2 cut(s)	536, 875
AhdI	GACNNNNNGTC	1 cut(s)	577
AjiI	CACGTC	1 cut(s)	797
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
Alw21I	GWGCWC	2 cut(s)	291, 792
Alw26I	GTCTC	6 cut(s)	123, 263, 275, 630, 721, 803
Alw44I	GTGCAC	1 cut(s)	287
AlwI	GGATC	5 cut(s)	32, 103, 280, 493, 596
AlwNI	CAGNNNCTG	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	409, 705
ApoI	RAATTY	2 cut(s)	773, 824
Asp718I	GGTACC	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	885
AspS9I	GGNCC	1 cut(s)	740
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	25, 875
AvaII	GGWCC	1 cut(s)	740
BaeGI	GKGCMC	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	592
Bbv12I	GWGCWC	2 cut(s)	291, 792
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	396, 717
BccI	CCATC	3 cut(s)	367, 562, 854
BciT130I	CCWGG	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	6 cut(s)	123, 263, 275, 630, 721, 803
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	410
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	2 cut(s)	410, 706
BlsI	GCNGC	2 cut(s)	411, 707
Bme1390I	CCNGG	2 cut(s)	492, 612
Bme18I	GGWCC	1 cut(s)	740
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmgBI	CACGTC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	2 cut(s)	594, 741
BmrFI	CCNGG	2 cut(s)	492, 612
BmsI	GCATC	2 cut(s)	77, 856
Bpu10I	CCTNAGC	2 cut(s)	59, 645
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	492
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	168, 480
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 611
Bse1I	ACTGG	2 cut(s)	442, 596
Bse3DI	GCAATG	5 cut(s)	83, 664, 679, 698, 720
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	168, 480
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	331, 611
BseMI	GCAATG	5 cut(s)	83, 664, 679, 698, 720
BseMII	CTCAG	3 cut(s)	50, 270, 317
BseNI	ACTGG	2 cut(s)	442, 596
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	396, 717
BseYI	CCCAGC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	2 cut(s)	291, 792
BsiSI	CCGG	2 cut(s)	11, 492
BslFI	GGGAC	2 cut(s)	753, 791
BslI	CCNNNNNNNGG	2 cut(s)	331, 611
BsmAI	GTCTC	6 cut(s)	123, 263, 275, 630, 721, 803
BsmBI	CGTCTC	1 cut(s)	803
BsmFI	GGGAC	2 cut(s)	753, 791
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	291, 792
BspCNI	CTCAG	3 cut(s)	51, 271, 316
BspLI	GGNNCC	2 cut(s)	594, 741
BspMAI	CTGCAG	1 cut(s)	414
BspPI	GGATC	5 cut(s)	32, 103, 280, 493, 596
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	5 cut(s)	83, 664, 679, 698, 720
BsrI	ACTGG	2 cut(s)	442, 596
BssECI	CCNNGG	2 cut(s)	168, 480
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	688
BstDEI	CTNAG	4 cut(s)	59, 279, 303, 645
BstDSI	CCRYGG	2 cut(s)	168, 480
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	885
BstMAI	GTCTC	6 cut(s)	123, 263, 275, 630, 721, 803
BstMWI	GCNNNNNNNGC	3 cut(s)	688, 702, 761
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	2 cut(s)	490, 610
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	396, 717
BstX2I	RGATCY	4 cut(s)	37, 108, 149, 485
BstYI	RGATCY	4 cut(s)	37, 108, 149, 485
BtgI	CCRYGG	2 cut(s)	168, 480
BtrI	CACGTC	1 cut(s)	797
BtsI	GCAGTG	3 cut(s)	214, 639, 762
BtsIMutI	CAGTG	4 cut(s)	189, 214, 639, 762
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	885
Cfr13I	GGNCC	1 cut(s)	740
Csp6I	GTAC	3 cut(s)	49, 460, 593
CviAII	CATG	2 cut(s)	124, 651
CviQI	GTAC	3 cut(s)	49, 460, 593
DdeI	CTNAG	4 cut(s)	59, 279, 303, 645
DraIII	CACNNNGTG	1 cut(s)	688
DriI	GACNNNNNGTC	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	3 cut(s)	63, 73, 446
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	610
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	2 cut(s)	127, 654
FaiI	YATR	9 cut(s)	125, 200, 202, 204, 348, 363, 652, 804, 819
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	753, 791
FatI	CATG	2 cut(s)	123, 650
Fnu4HI	GCNGC	2 cut(s)	410, 706
Fsp4HI	GCNGC	2 cut(s)	410, 706
FspAI	RTGCGCAY	1 cut(s)	884
FspBI	CTAG	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	884
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	2 cut(s)	410, 706
GsaI	CCCAGC	1 cut(s)	228
HapII	CCGG	2 cut(s)	11, 492
HhaI	GCGC	1 cut(s)	885
Hin1II	CATG	2 cut(s)	127, 654
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HincII	GTYRAC	2 cut(s)	100, 235
HindII	GTYRAC	2 cut(s)	100, 235
HinfI	GANTC	5 cut(s)	25, 476, 512, 714, 782
HpaII	CCGG	2 cut(s)	11, 492
HphI	GGTGA	2 cut(s)	25, 875
Hpy166II	GTNNAC	3 cut(s)	100, 235, 289
Hpy188III	TCNNGA	9 cut(s)	35, 41, 158, 178, 516, 536, 560, 770, 872
Hpy8I	GTNNAC	3 cut(s)	100, 235, 289
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	38, 133, 421, 657
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	2 cut(s)	216, 796
HpyCH4V	TGCA	6 cut(s)	289, 350, 412, 672, 691, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	688, 702, 761
HpyF3I	CTNAG	4 cut(s)	59, 279, 303, 645
HpySE526I	ACGT	2 cut(s)	216, 796
Hsp92II	CATG	2 cut(s)	127, 654
HspAI	GCGC	1 cut(s)	883
KpnI	GGTACC	1 cut(s)	596
LmnI	GCTCC	2 cut(s)	654, 787
Lsp1109I	GCAGC	2 cut(s)	396, 717
LweI	GCATC	2 cut(s)	77, 856
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	216, 796
MaeIII	GTNAC	1 cut(s)	263
MboII	GAAGA	7 cut(s)	146, 148, 193, 309, 524, 722, 833
MflI	RGATCY	4 cut(s)	37, 108, 149, 485
MhlI	GDGCHC	2 cut(s)	291, 792
MluCI	AATT	2 cut(s)	773, 824
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	9 cut(s)	48, 54, 241, 249, 325, 672, 694, 742, 777
MseI	TTAA	1 cut(s)	453
MspI	CCGG	2 cut(s)	11, 492
MspR9I	CCNGG	2 cut(s)	492, 612
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	3 cut(s)	688, 702, 761
NciI	CCSGG	1 cut(s)	492
NlaIII	CATG	2 cut(s)	127, 654
NlaIV	GGNNCC	2 cut(s)	594, 741
NsbI	TGCGCA	1 cut(s)	884
PfeI	GAWTC	4 cut(s)	25, 476, 512, 782
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	411, 707
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	594, 741
PspPI	GGNCC	1 cut(s)	740
PstI	CTGCAG	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	4 cut(s)	37, 108, 149, 485
RsaI	GTAC	3 cut(s)	50, 461, 594
RsaNI	GTAC	3 cut(s)	49, 460, 593
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	2 cut(s)	410, 706
Sau96I	GGNCC	1 cut(s)	740
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	2 cut(s)	492, 612
SduI	GDGCHC	2 cut(s)	291, 792
SetI	ASST	8 cut(s)	144, 219, 234, 296, 336, 452, 504, 799
SfaNI	GCATC	2 cut(s)	77, 856
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	773, 824
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	490, 610
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	2 cut(s)	219, 799
TaqI	TCGA	1 cut(s)	712
TasI	AATT	2 cut(s)	773, 824
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	4 cut(s)	25, 476, 512, 782
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	4 cut(s)	196, 214, 646, 762
TseI	GCWGC	2 cut(s)	409, 705
TspDTI	ATGAA	3 cut(s)	149, 558, 834
TspGWI	ACGGA	2 cut(s)	185, 469
TspRI	CASTG	4 cut(s)	196, 214, 646, 762
VneI	GTGCAC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	609
XapI	RAATTY	2 cut(s)	773, 824
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.