Rroxscaffold_2G00122260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003066
Physical Location & Seq
Forward (+)
55257993 .. 55259612
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122260.1

Sequence Viewer

Length: 282 bp
ATGAAACCTTTCTTCTATCTAGACGCTGCACAATCTCTCTCCCTCTCATCACAGACTCCGCATCACACACACCCTCCCTCTGACGCTGCCTCAGCCTCTCATCACGATTTCGGGTTGGAAATCGAAGCCTCAATCAAGGCTGCTTGGAAATTTGATTCAGAGAGAAACGGGTATGGAACTGGTGTTGGAAGCAGTGATGGGATAAAGAGCTTTGACTTTAAAATTCCGGAGGAGAGGATCCATGGAGGACCTCTCATGTCACTGTTTGGTGGTAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.01

Weight (kDa)

5.77

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 1 cut(s) 59
AclWI GGATC 2 cut(s) 232, 245
AcsI RAATTY 2 cut(s) 149, 222
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
AlwI GGATC 2 cut(s) 232, 245
Aor13HI TCCGGA 1 cut(s) 226
ApeKI GCWGC 3 cut(s) 26, 86, 140
ApoI RAATTY 2 cut(s) 149, 222
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 248
BamHI GGATCC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 13, 73, 127
BccI CCATC 1 cut(s) 191
BfaI CTAG 1 cut(s) 20
BisI GCNGC 3 cut(s) 27, 87, 141
BlsI GCNGC 3 cut(s) 28, 88, 142
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 239
BmsI GCATC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 237, 269
Bpu10I CCTNAGC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bse1I ACTGG 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 3 cut(s) 13, 73, 127
BsgI GTGCAG 1 cut(s) 12
BsiSI CCGG 1 cut(s) 227
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 104
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 2 cut(s) 232, 245
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 91
BstDSI CCRYGG 1 cut(s) 241
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 13, 73, 127
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 199, 260
Cfr13I GGNCC 1 cut(s) 248
CseI GACGC 2 cut(s) 32, 92
CviAII CATG 2 cut(s) 242, 256
CviJI RGCY 4 cut(s) 95, 128, 140, 210
CviKI_1 RGCY 4 cut(s) 95, 128, 140, 210
DdeI CTNAG 1 cut(s) 91
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
DraI TTTAAA 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 2 cut(s) 245, 259
FaiI YATR 4 cut(s) 174, 243, 257, 280
FatI CATG 2 cut(s) 241, 255
Fnu4HI GCNGC 3 cut(s) 27, 87, 141
Fsp4HI GCNGC 3 cut(s) 27, 87, 141
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 27, 87, 141
HapII CCGG 1 cut(s) 227
HgaI GACGC 2 cut(s) 32, 92
Hin1II CATG 2 cut(s) 245, 259
HinfI GANTC 2 cut(s) 55, 155
HpaII CCGG 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 82, 160
Hpy188III TCNNGA 3 cut(s) 20, 104, 227
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 91
Hsp92II CATG 2 cut(s) 245, 259
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 237
LpnPI CCDG 2 cut(s) 165, 240
Lsp1109I GCAGC 3 cut(s) 13, 73, 127
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 258
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 1 cut(s) 4
MflI RGATCY 1 cut(s) 237
MluCI AATT 3 cut(s) 149, 222, 274
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 2 cut(s) 96, 166
MroI TCCGGA 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 219
MspI CCGG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 241
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 245, 259
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 28, 88, 142
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
PsuI RGATCY 1 cut(s) 237
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 3 cut(s) 27, 87, 141
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 49
SetI ASST 3 cut(s) 10, 212, 253
SfaNI GCATC 1 cut(s) 70
SinI GGWCC 1 cut(s) 248
Sse9I AATT 3 cut(s) 149, 222, 274
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 123
TasI AATT 3 cut(s) 149, 222, 274
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 199, 267
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 3 cut(s) 26, 86, 140
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 17, 267
TspRI CASTG 2 cut(s) 199, 267
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 2 cut(s) 149, 222
XbaI TCTAGA 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.