Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003066

Physical Location & Seq

Genomic Coordinates Reverse (-)

45893773 .. 45896635

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003230

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAAGAGAAGCAAGCTCACCCATCTCACGGCTACGTGCTCGATTTTCCGATCTGGAGACATTGCCACCGTGAATGCCAAGAAGTGTTTTACGATGACAATGGTTTCTTCCCCAATATTGAGTTTGGGAGTGTGATCGTGGTTAATAACATTCTCATTGTGAAGGCAGAGATGGCCCAGGAGCTTGAAAACGAGATACCAGTGTGGTGTTTAGTGAAGTTGCATGGTGTTATTAAAGAAGATGGGTTTTCGATGCCTGTGAATTGGGGCACCCAAGAAACCTTGGATCATTGTTTCATAGAGTTTAATTCTCCTCAGATAGAAGGCGCACTTGCTAGGAGCAAGAGAGATGGATACAAGTTTGAAAATGGAAGTTTTGCTAGGATATTCAACACTATGTTCAAGAGTCTAGAAAAATTCCTGGACATCCTCAATGAAAGCGATGAAATTGAATTTCGTCAAACACTTAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF2A

Protein Analysis

159

Amino Acids

18.46

Weight (kDa)

5.11

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003066)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21160 FvH4_5g21160
malus_domestica	MD06G1040600.v1.1
prunus_persica	Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1
pyrus_communis	pycom06g03380
rosa_chinensis	RchiOBHm_Chr1g0379241 RchiOBHm_Chr7g0208291 RchiOBHm_Chr7g0235341
rosa_laevigata	RLG00000003230 RLG00000003232
rosa_multiflora	Rmu_co7962606.1_g000001 Rmu_sc0040203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101090 Rroxscaffold_2G00122260 Rroxscaffold_3G00250610 Rroxscaffold_5G00350460 Rroxscaffold_5G00361300
rosa_rugosa	Rorug02G0101400 Rorug02G0101500 Rorug02G0101600 Rorug07G0102700.1 Rorug07G0103000
rosa_samantha	Rh4DG103100 Rh5DG324000 Rh7AG237100 Rh7AG237300 Rh7AG445100 Rh7BG232600 Rh7BG232800 Rh7DG243100 Rh7DG243300
rosa_wichuraiana	Rw7G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	416, 452
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	5 cut(s)	188, 365, 391, 403, 452
AjnI	CCWGG	2 cut(s)	177, 420
AluBI	AGCT	2 cut(s)	17, 184
AluI	AGCT	2 cut(s)	17, 184
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	2 cut(s)	416, 452
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	188, 221
BanI	GGYRCC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	4 cut(s)	31, 166, 236, 344
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	179, 422
BciVI	GTATCC	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	3 cut(s)	336, 381, 410
BfuI	GTATCC	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	179, 422
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	179, 422
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	177, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	179, 422
BseDI	CCNNGG	2 cut(s)	177, 282
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	42, 272
Bsp143I	GATC	3 cut(s)	51, 135, 286
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	177, 282
BssMI	GATC	3 cut(s)	51, 135, 286
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	179, 422
Bst4CI	ACNGT	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	3 cut(s)	54, 138, 289
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	3 cut(s)	51, 135, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	179, 422
BstSCI	CCNGG	2 cut(s)	177, 420
BstSLI	GKGCMC	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	175
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	4 cut(s)	17, 33, 176, 184
CviKI_1	RGCY	4 cut(s)	17, 33, 176, 184
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	53, 137, 288
DpnII	GATC	3 cut(s)	51, 135, 286
Eco130I	CCWWGG	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	177, 420
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	227
FaiI	YATR	3 cut(s)	225, 299, 398
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	1 cut(s)	223
FokI	GGATG	1 cut(s)	413
FspBI	CTAG	3 cut(s)	336, 381, 410
GlaI	GCGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	1 cut(s)	406
HphI	GGTGA	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	51, 318
Hpy188III	TCNNGA	3 cut(s)	55, 403, 410
HpyAV	CCTTC	2 cut(s)	157, 317
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	51, 135, 286
LmnI	GCTCC	2 cut(s)	181, 339
LpnPI	CCDG	7 cut(s)	40, 164, 191, 213, 270, 407, 434
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	3 cut(s)	336, 381, 410
MaeII	ACGT	1 cut(s)	36
MalI	GATC	3 cut(s)	53, 137, 288
MboI	GATC	3 cut(s)	51, 135, 286
MboII	GAAGA	2 cut(s)	100, 251
MhlI	GDGCHC	2 cut(s)	42, 272
MluCI	AATT	5 cut(s)	262, 307, 416, 447, 452
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	2 cut(s)	324, 440
MseI	TTAA	4 cut(s)	144, 234, 306, 468
MspR9I	CCNGG	2 cut(s)	179, 422
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	2 cut(s)	179, 422
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	3 cut(s)	51, 135, 286
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	271
PctI	GAATGC	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	420
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	177, 420
PspGI	CCWGG	2 cut(s)	177, 420
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	175
SaqAI	TTAA	4 cut(s)	144, 234, 306, 468
Sau3AI	GATC	3 cut(s)	51, 135, 286
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	179, 422
SduI	GDGCHC	2 cut(s)	42, 272
SetI	ASST	4 cut(s)	19, 39, 186, 284
SfaNI	GCATC	1 cut(s)	243
Sse9I	AATT	5 cut(s)	262, 307, 416, 447, 452
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	3 cut(s)	336, 381, 410
StyD4I	CCNGG	2 cut(s)	177, 420
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	42, 251
TasI	AATT	5 cut(s)	262, 307, 416, 447, 452
Tru1I	TTAA	4 cut(s)	144, 234, 306, 468
Tru9I	TTAA	4 cut(s)	144, 234, 306, 468
TscAI	CASTG	1 cut(s)	207
TspDTI	ATGAA	4 cut(s)	17, 286, 450, 459
TspRI	CASTG	1 cut(s)	207
XapI	RAATTY	2 cut(s)	416, 452
XbaI	TCTAGA	1 cut(s)	409
XspI	CTAG	3 cut(s)	336, 381, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.