Rh7BG232600

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003066
Physical Location & Seq
Forward (+)
20324157 .. 20327019
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG232600.1

Sequence Viewer

Length: 666 bp
ATGACAGTAGACAGCGCCACCATGGAAGACATGGAAGCCAAGGCCGAGCAGCTCGGTATCCAATTCTCCTCCATAGACTTGAACTCTGCACACCCACCTCACTTTAATTTCAGTGAATGCCAAGAAGTGTTTTACGATGACAATGGTTTCATCCCCAATATTGAGTTTGGGGGTGTGATCGTGGTCAATAACCTTCCCATTGTTGAGGCAGAGATGGCCCAGGAGCTTGAAAACGAGATTCGAGTGGTGTTTAGTGAAGTTGGTGTTATTAAAGAAGATGGGTTCTCGATGCCTGTGAATCCCAGCACCCAAGAAACCTTGGGTCATTGTTTCATAGAGTTTAATTCTCGTCAGGAAGCCACACTTGCTAGGAGCAAGAGAGATGGATACAAGTTTGGTAACTGCAAGTTGTCAGTAAGCCTCTATGATGCCTTTGGCAGTGAAGTTGCTACCCCTGACATGGGGACTTATTTAGAGACTAATGCATCCTTTTGTGGGTCCTCAAGGTATCCAGGGTCGCCTTCCTTGCTTAGTCCTGTAACAGAGGAAGACGAAGAACCCGTTCATAGTGATGAAACTAGTGCAGATGACCACGATGACATAATGCAGTGCAGTGAGCAAGACAATTATATGAGCAGTGAGGAATTTAGGGAAGTCATTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
RRM_1 eIF2A

Protein Analysis

221

Amino Acids

24.58

Weight (kDa)

4.08

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 77 - 137 2.7e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 644
AfiI CCNNNNNNNGG 3 cut(s) 460, 461, 495
AgsI TTSAA 3 cut(s) 82, 230, 662
AhlI ACTAGT 1 cut(s) 578
AjnI CCWGG 2 cut(s) 219, 511
AluBI AGCT 2 cut(s) 52, 226
AluI AGCT 2 cut(s) 52, 226
Alw26I GTCTC 1 cut(s) 470
AoxI GGCC 2 cut(s) 42, 216
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 644
Asp700I GAANNNNTTC 1 cut(s) 561
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 217, 498
AvaII GGWCC 1 cut(s) 498
BbsI GAAGAC 2 cut(s) 33, 555
BbvI GCAGC 1 cut(s) 61
BccI CCATC 3 cut(s) 208, 272, 377
BciT130I CCWGG 2 cut(s) 221, 513
BciVI GTATCC 3 cut(s) 68, 380, 519
BcoDI GTCTC 1 cut(s) 470
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 2 cut(s) 369, 579
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 3 cut(s) 68, 380, 519
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 2 cut(s) 221, 513
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 217, 498
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 2 cut(s) 221, 513
BmsI GCATC 3 cut(s) 279, 418, 494
BpiI GAAGAC 2 cut(s) 33, 555
BpuEI CTTGAG 1 cut(s) 487
BsaJI CCNNGG 5 cut(s) 21, 39, 219, 318, 512
Bsc4I CCNNNNNNNGG 3 cut(s) 460, 461, 495
BseBI CCWGG 2 cut(s) 221, 513
BseDI CCNNGG 5 cut(s) 21, 39, 219, 318, 512
BseGI GGATG 2 cut(s) 150, 485
BseLI CCNNNNNNNGG 3 cut(s) 460, 461, 495
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 3 cut(s) 72, 603, 631
BshFI GGCC 2 cut(s) 44, 218
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 3 cut(s) 460, 461, 495
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 478
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 2 cut(s) 44, 218
Bsp143I GATC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 21
BspANI GGCC 2 cut(s) 44, 218
BspLI GGNNCC 1 cut(s) 499
BssECI CCNNGG 5 cut(s) 21, 39, 219, 318, 512
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 3 cut(s) 21, 39, 318
Bst2UI CCWGG 2 cut(s) 221, 513
Bst4CI ACNGT 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 530
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 150, 485
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 215, 365, 526
BstNI CCWGG 2 cut(s) 221, 513
BstSCI CCNGG 2 cut(s) 219, 511
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 2 cut(s) 33, 555
BsuI GTATCC 3 cut(s) 68, 380, 519
BsuRI GGCC 2 cut(s) 44, 218
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 150, 485
BtsI GCAGTG 4 cut(s) 445, 614, 619, 643
BtsIMutI CAGTG 5 cut(s) 118, 445, 614, 619, 643
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 217, 498
CviAII CATG 3 cut(s) 22, 31, 460
CviJI RGCY 7 cut(s) 38, 44, 52, 218, 226, 359, 420
CviKI_1 RGCY 7 cut(s) 38, 44, 52, 218, 226, 359, 420
DdeI CTNAG 1 cut(s) 530
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco130I CCWWGG 3 cut(s) 21, 39, 318
Eco47I GGWCC 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 219, 511
EcoT14I CCWWGG 3 cut(s) 21, 39, 318
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 3 cut(s) 21, 39, 318
FaeI CATG 3 cut(s) 25, 34, 463
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 1 cut(s) 478
FatI CATG 3 cut(s) 21, 30, 459
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 2 cut(s) 137, 472
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 369, 579
GlaI GCGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 44, 218
HhaI GCGC 1 cut(s) 17
Hin1II CATG 3 cut(s) 25, 34, 463
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 2 cut(s) 238, 298
Hpy166II GTNNAC 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 286, 353
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 203, 531
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 6 cut(s) 89, 405, 485, 584, 607, 612
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 365, 526
HpyF3I CTNAG 1 cut(s) 530
Hsp92II CATG 3 cut(s) 25, 34, 463
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 223, 372
LpnPI CCDG 9 cut(s) 206, 233, 306, 316, 338, 468, 498, 525, 549
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 3 cut(s) 279, 418, 494
MaeI CTAG 2 cut(s) 369, 579
MaeIII GTNAC 2 cut(s) 398, 538
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 4 cut(s) 38, 287, 560, 566
MluCI AATT 5 cut(s) 62, 106, 343, 625, 644
MnlI CCTC 7 cut(s) 79, 108, 199, 431, 511, 538, 634
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 3 cut(s) 105, 270, 342
MslI CAYNNNNRTG 1 cut(s) 570
MspR9I CCNGG 2 cut(s) 221, 513
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 2 cut(s) 221, 513
MwoI GCNNNNNNNGC 3 cut(s) 215, 365, 526
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 177
NlaIII CATG 3 cut(s) 25, 34, 463
NlaIV GGNNCC 1 cut(s) 499
NmeAIII GCCGAG 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PctI GAATGC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 238, 298
PkrI GCNGC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 219, 511
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 219, 511
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 2 cut(s) 217, 498
PspPPI RGGWCCY 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 3 cut(s) 105, 270, 342
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 217, 498
ScrFI CCNGG 2 cut(s) 221, 513
SetI ASST 6 cut(s) 54, 100, 195, 228, 320, 509
SfaNI GCATC 3 cut(s) 279, 418, 494
SinI GGWCC 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
SpeI ACTAGT 1 cut(s) 578
Sse9I AATT 5 cut(s) 62, 106, 343, 625, 644
SspI AATATT 1 cut(s) 160
SspMI CTAG 2 cut(s) 369, 579
StyD4I CCNGG 2 cut(s) 219, 511
StyI CCWWGG 3 cut(s) 21, 39, 318
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 2 cut(s) 241, 287
TasI AATT 5 cut(s) 62, 106, 343, 625, 644
TfiI GAWTC 2 cut(s) 238, 298
Tru1I TTAA 3 cut(s) 105, 270, 342
Tru9I TTAA 3 cut(s) 105, 270, 342
TscAI CASTG 5 cut(s) 118, 445, 614, 619, 643
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 139, 322, 554, 588
TspRI CASTG 5 cut(s) 118, 445, 614, 619, 643
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 1 cut(s) 644
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 2 cut(s) 369, 579
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.