Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003066

Physical Location & Seq

Genomic Coordinates Reverse (-)

23071522 .. 23084822

Gene Structure 13301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGCAACTACGTTGGATTTGAGACTCCAACAATAGTCCGCCACTTAATGCTCTTGCTAGGCGATCTCATTACCGCTAGATTTGCGGGTTGTCACTTTGATGAGACGGTCTTCCCGTCGTTAGGGGGAGATAAGAACACGGATGTTCAGCGAGAAACGACGAGGAATTGTCGTAGTCCGTCCCCACTATGTCTCATCTTGATCCCTATTAAAGTGACGAGATCACACAAATATGCCGCAAACATGCACGCAAGGAAGGACGTCCCTACGAGAGGACGTAGCGCCACCCTACACGGAGAGACGGCGCCACCATGGAAGACATGGAAGCCAAGGCCGAGCAGACTCGGTATCCAATTCTCCTCCATGGATTTGAACTCTGCACACCCACCTCACTTTAATTTCGGTGAATGCCAAGAAGTGTTTTACGACGAAAATGGTTTCATCCCCAATATTGAGTTTGGGAGTGTGATCGTGGTCAATAACCTTCCCATTGTTGAGGCGAGAGATGGCCGGGAGCTTGAAAACGAGATTCGAGTGGTGTTTAGTGAAGTTGGTGTTATTAAAGAAGATGGGTTTTCAATGCTCGTGAATCCCAGCACCCAAGAAACCTTGGGTCATTGTTTCATAGAGTTTAATTCTCGTCAGAAAGCTGCACTTGCTAGGAACAAGAGAGATGGATACAAGTTTGGTAAGCTGCAAGATGTCCAGCAGACCTACTTCTTTGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF2A

Protein Analysis

243

Amino Acids

27.48

Weight (kDa)

7.09

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003066)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21160 FvH4_5g21160
malus_domestica	MD06G1040600.v1.1
prunus_persica	Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1 Prupe.5G046800_v2.0.a1
pyrus_communis	pycom06g03380
rosa_chinensis	RchiOBHm_Chr1g0379241 RchiOBHm_Chr7g0208291 RchiOBHm_Chr7g0235341
rosa_laevigata	RLG00000003230 RLG00000003232
rosa_multiflora	Rmu_co7962606.1_g000001 Rmu_sc0040203.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101090 Rroxscaffold_2G00122260 Rroxscaffold_3G00250610 Rroxscaffold_5G00350460 Rroxscaffold_5G00361300
rosa_rugosa	Rorug02G0101400 Rorug02G0101500 Rorug02G0101600 Rorug07G0102700.1 Rorug07G0103000
rosa_samantha	Rh4DG103100 Rh5DG324000 Rh7AG237100 Rh7AG237300 Rh7AG445100 Rh7BG232600 Rh7BG232800 Rh7DG243100 Rh7DG243300
rosa_wichuraiana	Rw7G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	4 cut(s)	40, 75, 86, 237
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	508
AcyI	GRCGYC	2 cut(s)	261, 305
AfiI	CCNNNNNNNGG	2 cut(s)	122, 272
AgsI	TTSAA	4 cut(s)	373, 521, 579, 725
AluBI	AGCT	3 cut(s)	517, 650, 694
AluI	AGCT	3 cut(s)	517, 650, 694
Alw26I	GTCTC	4 cut(s)	17, 98, 197, 293
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	2 cut(s)	332, 508
ApeKI	GCWGC	2 cut(s)	650, 694
AspLEI	GCGC	2 cut(s)	284, 307
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	103, 323
BbvI	GCAGC	2 cut(s)	637, 681
BccI	CCATC	3 cut(s)	500, 563, 668
BceAI	ACGGC	1 cut(s)	318
BciVI	GTATCC	2 cut(s)	359, 671
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	4 cut(s)	17, 98, 197, 293
BfaI	CTAG	3 cut(s)	59, 78, 660
BfoI	RGCGCY	2 cut(s)	285, 308
BfuI	GTATCC	2 cut(s)	359, 671
BisI	GCNGC	3 cut(s)	237, 651, 695
BlsI	GCNGC	3 cut(s)	238, 652, 696
Bme1390I	CCNGG	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	512
BpiI	GAAGAC	2 cut(s)	103, 323
BpuMI	CCSGG	1 cut(s)	512
BsaHI	GRCGYC	2 cut(s)	261, 305
BsaJI	CCNNGG	4 cut(s)	311, 329, 363, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 272
BseDI	CCNNGG	4 cut(s)	311, 329, 363, 609
BseGI	GGATG	2 cut(s)	148, 441
BseLI	CCNNNNNNNGG	2 cut(s)	122, 272
BseRI	GAGGAG	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	637, 681
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	2 cut(s)	363, 636
BshFI	GGCC	2 cut(s)	334, 510
BshNI	GGYRCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	166, 248
BslI	CCNNNNNNNGG	2 cut(s)	122, 272
BsmAI	GTCTC	4 cut(s)	17, 98, 197, 293
BsmBI	CGTCTC	2 cut(s)	98, 293
BsmFI	GGGAC	2 cut(s)	166, 248
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	2 cut(s)	334, 510
Bsp143I	GATC	4 cut(s)	64, 201, 221, 468
Bsp19I	CCATGG	2 cut(s)	311, 363
BspACI	CCGC	4 cut(s)	40, 75, 86, 237
BspANI	GGCC	2 cut(s)	334, 510
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	304
BssECI	CCNNGG	4 cut(s)	311, 329, 363, 609
BssMI	GATC	4 cut(s)	64, 201, 221, 468
BssNI	GRCGYC	2 cut(s)	261, 305
BssSI	CACGAG	1 cut(s)	584
BssT1I	CCWWGG	4 cut(s)	311, 329, 363, 609
Bst2BI	CACGAG	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	2 cut(s)	261, 305
BstC8I	GCNNGC	1 cut(s)	249
BstDSI	CCRYGG	2 cut(s)	311, 363
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	148, 441
BstH2I	RGCGCY	2 cut(s)	285, 308
BstHHI	GCGC	2 cut(s)	284, 307
BstKTI	GATC	4 cut(s)	67, 204, 224, 471
BstMAI	GTCTC	4 cut(s)	17, 98, 197, 293
BstMBI	GATC	4 cut(s)	64, 201, 221, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 656
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	637, 681
BstV2I	GAAGAC	2 cut(s)	103, 323
BsuI	GTATCC	2 cut(s)	359, 671
BsuRI	GGCC	2 cut(s)	334, 510
BtgI	CCRYGG	2 cut(s)	311, 363
BtsCI	GGATG	2 cut(s)	148, 441
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	2 cut(s)	284, 307
CviAII	CATG	4 cut(s)	244, 312, 321, 364
CviJI	RGCY	6 cut(s)	328, 334, 510, 517, 650, 694
CviKI_1	RGCY	6 cut(s)	328, 334, 510, 517, 650, 694
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	4 cut(s)	66, 203, 223, 470
DpnII	GATC	4 cut(s)	64, 201, 221, 468
EaeI	YGGCCR	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	4 cut(s)	311, 329, 363, 609
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoT14I	CCWWGG	4 cut(s)	311, 329, 363, 609
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
ErhI	CCWWGG	4 cut(s)	311, 329, 363, 609
Esp3I	CGTCTC	2 cut(s)	98, 293
FaeI	CATG	4 cut(s)	247, 315, 324, 367
FaiI	YATR	7 cut(s)	190, 234, 245, 313, 322, 365, 626
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	2 cut(s)	166, 248
FatI	CATG	4 cut(s)	243, 311, 320, 363
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	237, 651, 695
FokI	GGATG	2 cut(s)	155, 428
Fsp4HI	GCNGC	3 cut(s)	237, 651, 695
FspBI	CTAG	3 cut(s)	59, 78, 660
GlaI	GCGC	2 cut(s)	283, 306
GluI	GCNGC	3 cut(s)	237, 651, 695
GsaI	CCCAGC	1 cut(s)	597
HaeII	RGCGCY	2 cut(s)	285, 308
HaeIII	GGCC	2 cut(s)	334, 510
HapII	CCGG	1 cut(s)	511
HhaI	GCGC	2 cut(s)	284, 307
Hin1I	GRCGYC	2 cut(s)	261, 305
Hin1II	CATG	4 cut(s)	247, 315, 324, 367
Hin6I	GCGC	2 cut(s)	282, 305
HinP1I	GCGC	2 cut(s)	282, 305
HinfI	GANTC	5 cut(s)	25, 342, 529, 589, 725
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	1 cut(s)	645
Hpy188III	TCNNGA	3 cut(s)	199, 586, 729
Hpy99I	CGWCG	3 cut(s)	121, 163, 431
HpyAV	CCTTC	2 cut(s)	250, 494
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	3 cut(s)	12, 261, 277
HpyCH4V	TGCA	4 cut(s)	247, 380, 653, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 656
HpySE526I	ACGT	3 cut(s)	12, 261, 277
Hsp92I	GRCGYC	2 cut(s)	261, 305
Hsp92II	CATG	4 cut(s)	247, 315, 324, 367
HspAI	GCGC	2 cut(s)	282, 305
KasI	GGCGCC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	64, 201, 221, 468
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	3 cut(s)	524, 607, 719
Lsp1109I	GCAGC	2 cut(s)	637, 681
MaeI	CTAG	3 cut(s)	59, 78, 660
MaeII	ACGT	3 cut(s)	12, 261, 277
MaeIII	GTNAC	2 cut(s)	92, 214
MalI	GATC	4 cut(s)	66, 203, 223, 470
MboI	GATC	4 cut(s)	64, 201, 221, 468
MboII	GAAGA	3 cut(s)	103, 328, 578
MluCI	AATT	4 cut(s)	166, 353, 397, 634
Mly113I	GGCGCC	1 cut(s)	305
MlyI	GAGTC	2 cut(s)	19, 336
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	5 cut(s)	156, 266, 370, 399, 490
MseI	TTAA	5 cut(s)	47, 210, 396, 561, 633
MslI	CAYNNNNRTG	2 cut(s)	99, 231
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	83, 656
NarI	GGCGCC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	512
NcoI	CCATGG	2 cut(s)	311, 363
NdeII	GATC	4 cut(s)	64, 201, 221, 468
NlaIII	CATG	4 cut(s)	247, 315, 324, 367
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	92, 214
NspI	RCATGY	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PctI	GAATGC	1 cut(s)	413
PfeI	GAWTC	3 cut(s)	529, 589, 725
PkrI	GCNGC	3 cut(s)	238, 652, 696
PleI	GAGTC	2 cut(s)	19, 336
PluTI	GGCGCC	1 cut(s)	308
PpsI	GAGTC	2 cut(s)	19, 336
PspFI	CCCAGC	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	306
RseI	CAYNNNNRTG	2 cut(s)	99, 231
SaqAI	TTAA	5 cut(s)	47, 210, 396, 561, 633
SatI	GCNGC	3 cut(s)	237, 651, 695
Sau3AI	GATC	4 cut(s)	64, 201, 221, 468
SchI	GAGTC	2 cut(s)	19, 336
ScrFI	CCNGG	1 cut(s)	512
SfoI	GGCGCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	99, 231
Sse9I	AATT	4 cut(s)	166, 353, 397, 634
SsiI	CCGC	4 cut(s)	40, 75, 86, 237
SspDI	GGCGCC	1 cut(s)	304
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	3 cut(s)	59, 78, 660
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	4 cut(s)	311, 329, 363, 609
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	3 cut(s)	15, 264, 280
TaqI	TCGA	1 cut(s)	532
TasI	AATT	4 cut(s)	166, 353, 397, 634
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	3 cut(s)	529, 589, 725
Tru1I	TTAA	5 cut(s)	47, 210, 396, 561, 633
Tru9I	TTAA	5 cut(s)	47, 210, 396, 561, 633
TseFI	GTSAC	2 cut(s)	92, 214
TseI	GCWGC	2 cut(s)	650, 694
Tsp45I	GTSAC	2 cut(s)	92, 214
TspDTI	ATGAA	2 cut(s)	430, 613
TspGWI	ACGGA	3 cut(s)	155, 168, 309
XagI	CCTNNNNNAGG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XspI	CTAG	3 cut(s)	59, 78, 660
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.