Rroxscaffold_5G00350460

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003066
Physical Location & Seq
Reverse (-)
24440703 .. 24445249
4547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350460.1

Sequence Viewer

Length: 279 bp
ATGGCCTGTGAGCTTGAAAACGAGATTCGAGTGGTGTTTAGTGAAGTTGGTGTTATTAAAGAAGATGGGTTTTCGATGCTCGTGAATCCCAGCACCCAAGAAACCTTGGGTCATTGTTTCATAGAGTTTAATTCTCGTCGTAAAGCTGCACTTGCTAGGAACAAGAGAGATGGATACAAGTACCTTGGAGCAAATGGAGAAGAAATGATCTTAAAGGCACATGAGAAGCAAGGGAACGTTGGAAGCAAGGCACGAGGGCTCGCCGTAATGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
RRM_1 eIF2A

Protein Analysis

92

Amino Acids

10.25

Weight (kDa)

9.0

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 6 - 63 3.7e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 237
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 2 cut(s) 13, 146
AluI AGCT 2 cut(s) 13, 146
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 261
BauI CACGAG 2 cut(s) 80, 252
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 59, 164
BceAI ACGGC 1 cut(s) 248
BciVI GTATCC 1 cut(s) 167
BfaI CTAG 1 cut(s) 156
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmsI GCATC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 105, 184
BseDI CCNNGG 2 cut(s) 105, 184
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 1 cut(s) 207
BspANI GGCC 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 105, 184
BssMI GATC 1 cut(s) 207
BssSI CACGAG 2 cut(s) 80, 252
BssT1I CCWWGG 2 cut(s) 105, 184
Bst2BI CACGAG 2 cut(s) 80, 252
BstC8I GCNNGC 1 cut(s) 261
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 133
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 221
CviJI RGCY 4 cut(s) 5, 13, 146, 259
CviKI_1 RGCY 4 cut(s) 5, 13, 146, 259
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 105, 184
Eco24I GRGCYC 1 cut(s) 261
EcoT14I CCWWGG 2 cut(s) 105, 184
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 105, 184
FaeI CATG 1 cut(s) 224
FaiI YATR 2 cut(s) 122, 222
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 147
GsaI CCCAGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 224
HinfI GANTC 2 cut(s) 25, 85
Hpy188III TCNNGA 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 2 cut(s) 19, 103
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 237
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 2 cut(s) 74, 212
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 1 cut(s) 248
MseI TTAA 3 cut(s) 57, 129, 212
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 224
PfeI GAWTC 2 cut(s) 25, 85
PkrI GCNGC 1 cut(s) 148
Psp1406I AACGTT 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 89
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 3 cut(s) 57, 129, 212
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 207
SduI GDGCHC 1 cut(s) 261
SetI ASST 5 cut(s) 15, 107, 148, 186, 240
SfaNI GCATC 1 cut(s) 66
Sse9I AATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 156
StyI CCWWGG 2 cut(s) 105, 184
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 28, 74
TasI AATT 1 cut(s) 130
TfiI GAWTC 2 cut(s) 25, 85
Tru1I TTAA 3 cut(s) 57, 129, 212
Tru9I TTAA 3 cut(s) 57, 129, 212
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 109
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.