RchiOBHm_Chr7g0208591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008181
Physical Location & Seq
Forward (+)
26002874 .. 26004607
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18669

Sequence Viewer

Length: 366 bp
ATGGGCCGTGGTTTTTACGGGTGGTGGGACGATGCCAAATGGGTGGCCGGAATCGGGGATTGGGTTTGGCGGTCGTTGCCTCACAGGGACCAGAAGGGGTTGGGGCTGGCGGAGACACATCCGGGTTCAAGTGGGATCCGCCCCAAGACTGACGGTGTAGGTGGTGGAGTCTTGATTCGAGTGGCCGGGTTCTCCCCGGCGAGGGATGGCAGAGCGGTGGCTGGGGTCGAGGTGAGGGATGGAATGGGTGCCCAGAGTGTTTTTGGGTGCCCAACTGCGGATCTGGGCTTAGCCACTCAAGTTGGGCCTTGGTTTGGGCCTTTTGTTCTGTCTGGATACGTATTTGGGATCCAGGAGATCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.79

Weight (kDa)

6.71

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 364
AccB1I GGYRCC 2 cut(s) 248, 267
AccBSI CCGCTC 1 cut(s) 215
AciI CCGC 5 cut(s) 70, 110, 139, 215, 278
AclWI GGATC 5 cut(s) 130, 143, 288, 343, 356
AcoI YGGCCR 2 cut(s) 45, 183
AfiI CCNNNNNNNGG 5 cut(s) 54, 201, 202, 277, 314
AgsI TTSAA 1 cut(s) 129
AjnI CCWGG 1 cut(s) 351
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 5 cut(s) 130, 143, 288, 343, 356
AoxI GGCC 5 cut(s) 4, 45, 183, 305, 317
AspS9I GGNCC 4 cut(s) 4, 88, 305, 317
AsuC2I CCSGG 3 cut(s) 123, 187, 197
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 88
BaeGI GKGCMC 2 cut(s) 253, 272
BamHI GGATCC 2 cut(s) 135, 348
BanI GGYRCC 2 cut(s) 248, 267
BccI CCATC 2 cut(s) 200, 233
BciT130I CCWGG 1 cut(s) 353
BciVI GTATCC 1 cut(s) 329
BcnI CCSGG 3 cut(s) 123, 187, 197
BcoDI GTCTC 1 cut(s) 107
BfuI GTATCC 1 cut(s) 329
BglII AGATCT 1 cut(s) 357
BlpI GCTNAGC 1 cut(s) 289
Bme1390I CCNGG 4 cut(s) 123, 187, 197, 353
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 4 cut(s) 4, 88, 305, 317
BmiI GGNNCC 5 cut(s) 89, 137, 250, 269, 350
BmrFI CCNGG 4 cut(s) 123, 187, 197, 353
BmsI GCATC 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 3 cut(s) 123, 187, 197
BsaAI YACGTR 1 cut(s) 340
BsaJI CCNNGG 3 cut(s) 7, 195, 308
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 201, 202, 277, 314
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 7, 195, 308
BseGI GGATG 3 cut(s) 118, 211, 244
BseLI CCNNNNNNNGG 5 cut(s) 54, 201, 202, 277, 314
BseSI GKGCMC 2 cut(s) 253, 272
BseYI CCCAGC 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 5 cut(s) 6, 47, 185, 307, 319
BshNI GGYRCC 2 cut(s) 248, 267
BsiEI CGRYCG 1 cut(s) 74
BsiSI CCGG 4 cut(s) 48, 122, 186, 197
BslFI GGGAC 2 cut(s) 41, 101
BslI CCNNNNNNNGG 5 cut(s) 54, 201, 202, 277, 314
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 41, 101
BsnI GGCC 5 cut(s) 6, 47, 185, 307, 319
Bsp1286I GDGCHC 2 cut(s) 253, 272
Bsp143I GATC 4 cut(s) 135, 280, 348, 357
Bsp1720I GCTNAGC 1 cut(s) 289
BspACI CCGC 5 cut(s) 70, 110, 139, 215, 278
BspANI GGCC 5 cut(s) 6, 47, 185, 307, 319
BspLI GGNNCC 5 cut(s) 89, 137, 250, 269, 350
BspPI GGATC 5 cut(s) 130, 143, 288, 343, 356
BspT107I GGYRCC 2 cut(s) 248, 267
BsrBI CCGCTC 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 7, 195, 308
BssMI GATC 4 cut(s) 135, 280, 348, 357
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 3 cut(s) 118, 211, 244
BstKTI GATC 4 cut(s) 138, 283, 351, 360
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 4 cut(s) 135, 280, 348, 357
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 4 cut(s) 121, 185, 195, 351
BstSLI GKGCMC 2 cut(s) 253, 272
BstSNI TACGTA 1 cut(s) 340
BstX2I RGATCY 4 cut(s) 135, 280, 348, 357
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 4 cut(s) 135, 280, 348, 357
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 5 cut(s) 6, 47, 185, 307, 319
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 3 cut(s) 118, 211, 244
Cac8I GCNNGC 1 cut(s) 108
Cfr13I GGNCC 4 cut(s) 4, 88, 305, 317
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviJI RGCY 9 cut(s) 6, 47, 106, 185, 221, 288, 293, 307, 319
CviKI_1 RGCY 9 cut(s) 6, 47, 106, 185, 221, 288, 293, 307, 319
DdeI CTNAG 1 cut(s) 289
DpnI GATC 4 cut(s) 137, 282, 350, 359
DpnII GATC 4 cut(s) 135, 280, 348, 357
EaeI YGGCCR 2 cut(s) 45, 183
EciI GGCGGA 2 cut(s) 125, 128
Eco105I TACGTA 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaiI YATR 1 cut(s) 364
FaqI GGGAC 2 cut(s) 41, 101
FokI GGATG 3 cut(s) 105, 218, 251
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 5 cut(s) 6, 47, 185, 307, 319
HapII CCGG 4 cut(s) 48, 122, 186, 197
HinfI GANTC 3 cut(s) 51, 168, 175
HpaII CCGG 4 cut(s) 48, 122, 186, 197
HphI GGTGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 172, 333
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 289
HpySE526I ACGT 1 cut(s) 339
Kzo9I GATC 4 cut(s) 135, 280, 348, 357
LweI GCATC 1 cut(s) 22
MaeII ACGT 1 cut(s) 339
MalI GATC 4 cut(s) 137, 282, 350, 359
MbiI CCGCTC 1 cut(s) 215
MboI GATC 4 cut(s) 135, 280, 348, 357
MflI RGATCY 4 cut(s) 135, 280, 348, 357
MhlI GDGCHC 2 cut(s) 253, 272
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 4 cut(s) 90, 195, 223, 228
MspI CCGG 4 cut(s) 48, 122, 186, 197
MspR9I CCNGG 4 cut(s) 123, 187, 197, 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 3 cut(s) 123, 187, 197
NdeII GATC 4 cut(s) 135, 280, 348, 357
NlaIV GGNNCC 5 cut(s) 89, 137, 250, 269, 350
PfeI GAWTC 2 cut(s) 51, 175
PfoI TCCNGGA 1 cut(s) 351
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 340
PsiI TTATAA 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 5 cut(s) 89, 137, 250, 269, 350
PspPI GGNCC 4 cut(s) 4, 88, 305, 317
PsuI RGATCY 4 cut(s) 135, 280, 348, 357
Sau3AI GATC 4 cut(s) 135, 280, 348, 357
Sau96I GGNCC 4 cut(s) 4, 88, 305, 317
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 4 cut(s) 123, 187, 197, 353
SduI GDGCHC 2 cut(s) 253, 272
SetI ASST 3 cut(s) 163, 234, 342
SfaNI GCATC 1 cut(s) 22
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
SnaBI TACGTA 1 cut(s) 340
SsiI CCGC 5 cut(s) 70, 110, 139, 215, 278
StyD4I CCNGG 4 cut(s) 121, 185, 195, 351
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 178, 228
TfiI GAWTC 2 cut(s) 51, 175
VpaK11BI GGWCC 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.