Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Reverse (-)

65488145 .. 65488623

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTGGCGGCTGGTGTTATCGGGTTGATGGGGCCAAGAGCAATTCTTCGGTCCTCCGCGGACATCTCTACAAGACTGATGGGGCAGGCGGCGACGTCTTGAGTAGTGCGAACAAATCTGGGACGGGGTTCCTCCGGCGAGGACTGGAGGCTCAGCAACTGGGGGTGAGGACAAGGCAGGTCTGGGTGCCTAGAGAGATTTTGGGTGTCCAACCATGGACCCGGGCCCTTTGCTTACGATGGGTCTTTGCTAGGGTTGGCTGGGCCTCTGCTTTGTTGGATTGCTTAAGTAGGACTTTGGGATGGGCCTTCCTTCTTGGGGTTTTGCAGGTGGTGAATGAGCCCGAAGCTGTGAGGGTTCGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.4

Weight (kDa)

10.47

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
AatII	GACGTC	1 cut(s)	99
Acc36I	ACCTGC	2 cut(s)	169, 319
AccB1I	GGYRCC	1 cut(s)	187
AccII	CGCG	1 cut(s)	60
AciI	CCGC	4 cut(s)	9, 58, 60, 90
AcyI	GRCGYC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflII	CTTAAG	1 cut(s)	286
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	4 cut(s)	33, 225, 264, 306
ApaI	GGGCCC	1 cut(s)	229
AspS9I	GGNCC	7 cut(s)	33, 52, 219, 225, 226, 264, 306
AsuC2I	CCSGG	2 cut(s)	223, 224
AsuHPI	GGTGA	2 cut(s)	178, 346
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	2 cut(s)	52, 219
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	229, 345
BccI	CCATC	4 cut(s)	23, 74, 234, 297
BcnI	CCSGG	2 cut(s)	223, 224
BfaI	CTAG	2 cut(s)	192, 252
BfrI	CTTAAG	1 cut(s)	286
BfuAI	ACCTGC	2 cut(s)	169, 319
BisI	GCNGC	2 cut(s)	10, 91
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	11, 92
Bme1390I	CCNGG	2 cut(s)	223, 224
Bme18I	GGWCC	2 cut(s)	52, 219
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	7 cut(s)	33, 52, 219, 225, 226, 264, 306
BmiI	GGNNCC	5 cut(s)	34, 131, 189, 221, 227
BmrFI	CCNGG	2 cut(s)	223, 224
BmrI	ACTGGG	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	223, 224
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	58, 215, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	2 cut(s)	150, 165
BseDI	CCNNGG	3 cut(s)	58, 215, 222
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	150, 165
BseSI	GKGCMC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	4 cut(s)	35, 227, 266, 308
BshNI	GGYRCC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	136, 223
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	4 cut(s)	35, 227, 266, 308
BsoBI	CYCGRG	1 cut(s)	222
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	229, 345
Bsp1720I	GCTNAGC	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	4 cut(s)	9, 58, 60, 90
BspANI	GGCC	4 cut(s)	35, 227, 266, 308
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	5 cut(s)	34, 131, 189, 221, 227
BspMI	ACCTGC	2 cut(s)	169, 319
BspT107I	GGYRCC	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	150, 165
BssECI	CCNNGG	3 cut(s)	58, 215, 222
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	2 cut(s)	58, 215
BstF5I	GGATG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	221, 222
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	35, 227, 266, 308
BtgI	CCRYGG	2 cut(s)	58, 215
BtsCI	GGATG	1 cut(s)	308
BveI	ACCTGC	2 cut(s)	169, 319
Cac8I	GCNNGC	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	160
Cfr13I	GGNCC	7 cut(s)	33, 52, 219, 225, 226, 264, 306
Cfr42I	CCGCGG	1 cut(s)	61
Cfr9I	CCCGGG	1 cut(s)	222
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	9 cut(s)	12, 35, 152, 227, 261, 266, 308, 343, 350
CviKI_1	RGCY	9 cut(s)	12, 35, 152, 227, 261, 266, 308, 343, 350
DdeI	CTNAG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	2 cut(s)	229, 345
Eco47I	GGWCC	2 cut(s)	52, 219
Eco88I	CYCGRG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	2 cut(s)	229, 345
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	1 cut(s)	219
FaiI	YATR	1 cut(s)	217
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	10, 91
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	2 cut(s)	229, 345
Fsp4HI	GCNGC	2 cut(s)	10, 91
FspBI	CTAG	2 cut(s)	192, 252
GluI	GCNGC	2 cut(s)	10, 91
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	4 cut(s)	35, 227, 266, 308
HapII	CCGG	2 cut(s)	136, 223
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	219
HpaII	CCGG	2 cut(s)	136, 223
HphI	GGTGA	2 cut(s)	178, 346
Hpy188III	TCNNGA	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	319, 323
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	328
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	219
KspI	CCGCGG	1 cut(s)	61
MaeI	CTAG	2 cut(s)	192, 252
MaeII	ACGT	1 cut(s)	96
MboII	GAAGA	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	229, 345
MluCI	AATT	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	235, 258
MnlI	CCTC	7 cut(s)	65, 134, 142, 143, 162, 277, 348
MseI	TTAA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	60
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	2 cut(s)	136, 223
MspR9I	CCNGG	2 cut(s)	223, 224
MvnI	CGCG	1 cut(s)	60
NciI	CCSGG	2 cut(s)	223, 224
NcoI	CCATGG	1 cut(s)	215
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	5 cut(s)	34, 131, 189, 221, 227
PaqCI	CACCTGC	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	11, 92
PspFI	CCCAGC	1 cut(s)	261
PspN4I	GGNNCC	5 cut(s)	34, 131, 189, 221, 227
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	7 cut(s)	33, 52, 219, 225, 226, 264, 306
PstNI	CAGNNNCTG	1 cut(s)	160
SacII	CCGCGG	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	2 cut(s)	10, 91
Sau96I	GGNCC	7 cut(s)	33, 52, 219, 225, 226, 264, 306
ScrFI	CCNGG	2 cut(s)	223, 224
SduI	GDGCHC	2 cut(s)	229, 345
SetI	ASST	4 cut(s)	99, 183, 333, 352
Sfr303I	CCGCGG	1 cut(s)	61
SgrBI	CCGCGG	1 cut(s)	61
SinI	GGWCC	2 cut(s)	52, 219
SmaI	CCCGGG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	100, 286
SmoI	CTYRAG	2 cut(s)	100, 286
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	4 cut(s)	9, 58, 60, 90
SspMI	CTAG	2 cut(s)	192, 252
StyD4I	CCNGG	2 cut(s)	221, 222
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	43
TauI	GCSGC	2 cut(s)	12, 93
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TspMI	CCCGGG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	52, 219
XmaI	CCCGGG	1 cut(s)	222
XspI	CTAG	2 cut(s)	192, 252
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.