Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001626.1

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Reverse (-)

187025 .. 188165

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001626.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgcttgctggcatgacggggatgatggatggatggtggaatggccagcacttgcttggagcagcgggcacgccgacggtgattaggagaggtggtgatgctcgccgaaaactgaagctgcgatcagggaggaggaaaagaagtctgaagagcagagaggaggaagaggaagaagagtctttgaggtacaaggcaaaagaagcggtggaagaagaaataggaatgacgtttatcattgagaaaaagaaaggcacaggaatgaccgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

10.1

Weight (kDa)

9.62

Isoelectric Point (pI)

81.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 203
AcoI	YGGCCR	1 cut(s)	43
AcuI	CTGAAG	2 cut(s)	134, 167
AfaI	GTAC	1 cut(s)	188
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	62, 118
AsuHPI	GGTGA	2 cut(s)	91, 107
BaeGI	GKGCMC	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	74, 105
BccI	CCATC	3 cut(s)	19, 23, 27
BisI	GCNGC	2 cut(s)	63, 119
BlsI	GCNGC	2 cut(s)	64, 120
BmsI	GCATC	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
BseGI	GGATG	3 cut(s)	27, 34, 38
BseRI	GAGGAG	2 cut(s)	145, 173
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	74, 105
BshFI	GGCC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	2 cut(s)	65, 203
BspANI	GGCC	1 cut(s)	45
BspQI	GCTCTTC	1 cut(s)	143
BssMI	GATC	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	3 cut(s)	143, 159, 168
BstC8I	GCNNGC	6 cut(s)	6, 10, 47, 67, 71, 103
BstF5I	GGATG	3 cut(s)	27, 34, 38
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	74, 105
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	27, 34, 38
Cac8I	GCNNGC	6 cut(s)	6, 10, 47, 67, 71, 103
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	2 cut(s)	45, 118
CviKI_1	RGCY	2 cut(s)	45, 118
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	143, 159, 168
EarI	CTCTTC	3 cut(s)	143, 159, 168
Eco57I	CTGAAG	2 cut(s)	134, 167
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FatI	CATG	1 cut(s)	12
FauI	CCCGC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	63, 119
FokI	GGATG	3 cut(s)	34, 41, 45
Fsp4HI	GCNGC	2 cut(s)	63, 119
GluI	GCNGC	2 cut(s)	63, 119
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	2 cut(s)	91, 107
Hpy188I	TCNGA	1 cut(s)	147
Hpy99I	CGWCG	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	122
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	59, 111, 240
Lsp1109I	GCAGC	2 cut(s)	74, 105
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	227
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	6 cut(s)	160, 176, 182, 185, 221, 224
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	7 cut(s)	83, 123, 126, 151, 154, 160, 177
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	64, 120
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	143
SatI	GCNGC	2 cut(s)	63, 119
Sau3AI	GATC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	4 cut(s)	94, 120, 188, 230
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	257
SsiI	CCGC	2 cut(s)	65, 203
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	230
TseI	GCWGC	2 cut(s)	62, 118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.