RLG00000015297

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008181
Physical Location & Seq
Forward (+)
64182166 .. 64182778
613 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015297

Sequence Viewer

Length: 492 bp
ATGGTCCAAGCCGTCTCCCCCTTTTATCTGTTATTCTCCAAGACGTCGAGGTCCTCGACCCGTGTTGAAGTGACTTCGTTCATTCCTCCTCAGATTGGTTCGATATGGGCCTTGAGGTCGCTTTCGGTTCATCGTCCATTTGGATTGGGGATTGTTGGTGACTGGAAAATCTCATGCAGGACAGATCCGAGAGTCGGACGTCTTCGGCCATCTCGGGCACGGCTCAAGTCGACAGTGTTCGGATCTGGACTGGGGGCGAGTGAAGGGCTCGTGATGGGCTTGTTGTCGATCCAGTTGTGCATTGGAGTGGTGATCGGAGTGGAGCAGTGCCTGGGCTTTCGGCTGGACCCGCGCTACATCAGGTGGAGCTTTGATCAGAGAGGGTTGGGTCGGGCTAAGAAACAACCTTCCTATGGTTCATCGTGCGAACCGCCCCAAGGCTGGTGGGGTAGGCGGCGGCGCATTGAATCGAGCGACCGGAACTGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.27

Weight (kDa)

11.16

Isoelectric Point (pI)

61.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
AatII GACGTC 2 cut(s) 47, 202
AccI GTMKAC 1 cut(s) 230
AccII CGCG 1 cut(s) 352
AciI CCGC 4 cut(s) 350, 431, 454, 457
AclWI GGATC 3 cut(s) 179, 250, 283
AcoI YGGCCR 1 cut(s) 206
AcyI GRCGYC 2 cut(s) 44, 199
AfiI CCNNNNNNNGG 6 cut(s) 95, 194, 413, 437, 441, 484
AgsI TTSAA 2 cut(s) 68, 467
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 1 cut(s) 369
AluI AGCT 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 3 cut(s) 179, 250, 283
AlwNI CAGNNNCTG 1 cut(s) 331
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 2 cut(s) 108, 206
AspLEI GCGC 2 cut(s) 354, 462
AspS9I GGNCC 4 cut(s) 4, 51, 108, 346
AsuHPI GGTGA 2 cut(s) 170, 322
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 3 cut(s) 4, 51, 346
BaeGI GKGCMC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 270
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 194
BccI CCATC 2 cut(s) 217, 268
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 332
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 490
BisI GCNGC 2 cut(s) 455, 458
BlsI GCNGC 2 cut(s) 456, 459
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 3 cut(s) 4, 51, 346
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 4 cut(s) 4, 51, 108, 346
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 332
BmrI ACTGGG 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 194
BpuEI CTTGAG 2 cut(s) 133, 209
BsaHI GRCGYC 2 cut(s) 44, 199
BsaJI CCNNGG 2 cut(s) 331, 436
BsaWI WCCGGW 1 cut(s) 477
Bsc4I CCNNNNNNNGG 6 cut(s) 95, 194, 413, 437, 441, 484
Bse1I ACTGG 4 cut(s) 167, 255, 292, 488
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 331, 436
BseLI CCNNNNNNNGG 6 cut(s) 95, 194, 413, 437, 441, 484
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 4 cut(s) 167, 255, 292, 488
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 478
BshFI GGCC 2 cut(s) 110, 208
BsiEI CGRYCG 1 cut(s) 478
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 6 cut(s) 95, 194, 413, 437, 441, 484
BsmAI GTCTC 1 cut(s) 19
BsmBI CGTCTC 1 cut(s) 19
BsnI GGCC 2 cut(s) 110, 208
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 220, 270
Bsp143I GATC 5 cut(s) 184, 242, 288, 312, 373
BspACI CCGC 4 cut(s) 350, 431, 454, 457
BspANI GGCC 2 cut(s) 110, 208
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 3 cut(s) 179, 250, 283
BsrI ACTGG 4 cut(s) 167, 255, 292, 488
BssECI CCNNGG 2 cut(s) 331, 436
BssMI GATC 5 cut(s) 184, 242, 288, 312, 373
BssNI GRCGYC 2 cut(s) 44, 199
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 436
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 235
BstACI GRCGYC 2 cut(s) 44, 199
BstDEI CTNAG 2 cut(s) 90, 396
BstFNI CGCG 1 cut(s) 352
BstHHI GCGC 2 cut(s) 354, 462
BstKTI GATC 5 cut(s) 187, 245, 291, 315, 376
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 5 cut(s) 184, 242, 288, 312, 373
BstMCI CGRYCG 1 cut(s) 478
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 1 cut(s) 352
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 2 cut(s) 184, 242
BstYI RGATCY 2 cut(s) 184, 242
BsuRI GGCC 2 cut(s) 110, 208
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 2 cut(s) 240, 332
CaiI CAGNNNCTG 1 cut(s) 331
CfoI GCGC 2 cut(s) 354, 462
Cfr13I GGNCC 4 cut(s) 4, 51, 108, 346
CspCI CAANNNNNGTGG 2 cut(s) 425, 460
CviAII CATG 1 cut(s) 174
DdeI CTNAG 2 cut(s) 90, 396
DpnI GATC 5 cut(s) 186, 244, 290, 314, 375
DpnII GATC 5 cut(s) 184, 242, 288, 312, 373
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 3 cut(s) 4, 51, 346
Eco88I CYCGRG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 1 cut(s) 177
FaiI YATR 3 cut(s) 106, 175, 414
FatI CATG 1 cut(s) 173
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 1 cut(s) 373
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 455, 458
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 455, 458
FspBI CTAG 1 cut(s) 490
GlaI GCGC 2 cut(s) 353, 461
GluI GCNGC 2 cut(s) 455, 458
HaeIII GGCC 2 cut(s) 110, 208
HapII CCGG 1 cut(s) 478
HhaI GCGC 2 cut(s) 354, 462
Hin1I GRCGYC 2 cut(s) 44, 199
Hin1II CATG 1 cut(s) 177
Hin6I GCGC 2 cut(s) 352, 460
HinP1I GCGC 2 cut(s) 352, 460
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 2 cut(s) 192, 467
HpaII CCGG 1 cut(s) 478
HphI GGTGA 2 cut(s) 170, 322
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 6 cut(s) 93, 189, 197, 242, 317, 378
Hpy188III TCNNGA 2 cut(s) 246, 271
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 257, 417
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 44, 199
HpyCH4V TGCA 2 cut(s) 177, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 2 cut(s) 90, 396
HpySE526I ACGT 2 cut(s) 44, 199
Hsp92I GRCGYC 2 cut(s) 44, 199
Hsp92II CATG 1 cut(s) 177
HspAI GCGC 2 cut(s) 352, 460
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 5 cut(s) 184, 242, 288, 312, 373
LmnI GCTCC 2 cut(s) 322, 366
MaeI CTAG 1 cut(s) 490
MaeII ACGT 2 cut(s) 44, 199
MaeIII GTNAC 2 cut(s) 70, 158
MalI GATC 5 cut(s) 186, 244, 290, 314, 375
MboI GATC 5 cut(s) 184, 242, 288, 312, 373
MboII GAAGA 1 cut(s) 194
MflI RGATCY 2 cut(s) 184, 242
MhlI GDGCHC 2 cut(s) 220, 270
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 6 cut(s) 42, 64, 96, 99, 108, 374
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 5 cut(s) 184, 242, 288, 312, 373
NlaIII CATG 1 cut(s) 177
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 70, 158
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PfeI GAWTC 1 cut(s) 467
PkrI GCNGC 2 cut(s) 456, 459
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 4 cut(s) 4, 51, 108, 346
PspPPI RGGWCCY 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 2 cut(s) 184, 242
RseI CAYNNNNRTG 1 cut(s) 305
SalI GTCGAC 1 cut(s) 229
SatI GCNGC 2 cut(s) 455, 458
Sau3AI GATC 5 cut(s) 184, 242, 288, 312, 373
Sau96I GGNCC 4 cut(s) 4, 51, 108, 346
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 2 cut(s) 220, 270
SetI ASST 7 cut(s) 47, 53, 119, 202, 365, 371, 409
SinI GGWCC 3 cut(s) 4, 51, 346
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 112, 224
SmoI CTYRAG 2 cut(s) 112, 224
SsiI CCGC 4 cut(s) 350, 431, 454, 457
SspMI CTAG 1 cut(s) 490
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 2 cut(s) 47, 202
TaqI TCGA 6 cut(s) 47, 56, 101, 230, 287, 470
TauI GCSGC 2 cut(s) 457, 460
TfiI GAWTC 1 cut(s) 467
TscAI CASTG 2 cut(s) 240, 332
TseFI GTSAC 2 cut(s) 70, 158
Tsp45I GTSAC 2 cut(s) 70, 158
TspDTI ATGAA 3 cut(s) 70, 119, 408
TspRI CASTG 2 cut(s) 240, 332
VpaK11BI GGWCC 3 cut(s) 4, 51, 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 1 cut(s) 490
ZraI GACGTC 2 cut(s) 45, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.