Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Reverse (-)

17146180 .. 17146774

Gene Structure 595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCGGGTTGAAGCGACGCCGTTCATTTCTCCTCAGATTGGTTCGATCTGGGTCTTGAGGTTGTCTTCGGTTCGTCTTCCATTTGGATTGGGGACTGTTGGTGACTGGAAAATCTGGGATCCAGGGCGTAGTCGGTGTTCGATAAGTCCTTCCGGGGCACTGGAAAGGCTTTGGGCGCGGTGCAGGGATCGAGTCCTGGGCAGCATCTGTACTGCGGCCAGTGGCATGGGTGGCGGCGGGTGTTGTCGGGTTGATAGGGTCGAGAGGAGCCGACGTCTTGAGTCGTGCGAACAACTCTGGGATGGGGTTCCTCCGGCGAGGCCTGGCGGCTCAGCGACTGGGGGTGAGGACAAGGCAGGTCTGGGTGCCCAGAGAGATTTTGGGTGTCCAACAATGGACCTGGGCCCTTTGCTCACGATGGGCTCTATTGGATTGCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

15.63

Weight (kDa)

9.05

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	365
AccII	CGCG	1 cut(s)	178
AciI	CCGC	6 cut(s)	4, 178, 215, 234, 237, 327
AclWI	GGATC	3 cut(s)	113, 126, 195
AcoI	YGGCCR	1 cut(s)	216
AcyI	GRCGYC	2 cut(s)	17, 274
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	11
AjnI	CCWGG	4 cut(s)	121, 195, 322, 399
AlwI	GGATC	3 cut(s)	113, 126, 195
AlwNI	CAGNNNCTG	2 cut(s)	207, 338
AoxI	GGCC	3 cut(s)	216, 320, 403
ApaI	GGGCCC	1 cut(s)	407
ApeKI	GCWGC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	3 cut(s)	397, 403, 404
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	113, 356
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	3 cut(s)	160, 370, 407
BamHI	GGATCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	2 cut(s)	407, 425
BbsI	GAAGAC	2 cut(s)	57, 68
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	296, 412
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	4 cut(s)	123, 197, 324, 401
BcnI	CCSGG	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	4 cut(s)	202, 216, 235, 328
BlpI	GCTNAGC	1 cut(s)	331
BlsI	GCNGC	4 cut(s)	203, 217, 236, 329
Bme1390I	CCNGG	5 cut(s)	123, 154, 197, 324, 401
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	397, 403, 404
BmiI	GGNNCC	5 cut(s)	120, 269, 309, 367, 405
BmrFI	CCNGG	5 cut(s)	123, 154, 197, 324, 401
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	2 cut(s)	57, 68
Bpu1102I	GCTNAGC	1 cut(s)	331
BpuEI	CTTGAG	3 cut(s)	76, 299, 422
BpuMI	CCSGG	1 cut(s)	154
BsaHI	GRCGYC	2 cut(s)	17, 274
BsaJI	CCNNGG	4 cut(s)	122, 153, 196, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	4 cut(s)	110, 165, 219, 343
BseBI	CCWGG	4 cut(s)	123, 197, 324, 401
BseDI	CCNNGG	4 cut(s)	122, 153, 196, 400
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	47, 345
BseNI	ACTGG	4 cut(s)	110, 165, 219, 343
BseRI	GAGGAG	2 cut(s)	21, 280
BseSI	GKGCMC	3 cut(s)	160, 370, 407
BseXI	GCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	218, 322, 405
BshNI	GGYRCC	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	153, 314
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	218, 322, 405
Bsp120I	GGGCCC	1 cut(s)	403
Bsp1286I	GDGCHC	4 cut(s)	160, 370, 407, 425
Bsp143I	GATC	3 cut(s)	45, 118, 187
Bsp1720I	GCTNAGC	1 cut(s)	331
BspACI	CCGC	6 cut(s)	4, 178, 215, 234, 237, 327
BspANI	GGCC	3 cut(s)	218, 322, 405
BspCNI	CTCAG	2 cut(s)	46, 344
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	5 cut(s)	120, 269, 309, 367, 405
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	3 cut(s)	113, 126, 195
BspT107I	GGYRCC	1 cut(s)	365
BsrI	ACTGG	4 cut(s)	110, 165, 219, 343
BssECI	CCNNGG	4 cut(s)	122, 153, 196, 400
BssMI	GATC	3 cut(s)	45, 118, 187
BssNI	GRCGYC	2 cut(s)	17, 274
Bst2UI	CCWGG	4 cut(s)	123, 197, 324, 401
Bst4CI	ACNGT	1 cut(s)	97
BstACI	GRCGYC	2 cut(s)	17, 274
BstDEI	CTNAG	2 cut(s)	33, 331
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	3 cut(s)	48, 121, 190
BstMBI	GATC	3 cut(s)	45, 118, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 231
BstNI	CCWGG	4 cut(s)	123, 197, 324, 401
BstSCI	CCNGG	5 cut(s)	121, 152, 195, 322, 399
BstSLI	GKGCMC	3 cut(s)	160, 370, 407
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	213
BstV2I	GAAGAC	2 cut(s)	57, 68
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	218, 322, 405
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	158, 226
BveI	ACCTGC	1 cut(s)	347
CaiI	CAGNNNCTG	2 cut(s)	207, 338
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	397, 403, 404
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	7 cut(s)	169, 218, 270, 322, 330, 405, 423
CviKI_1	RGCY	7 cut(s)	169, 218, 270, 322, 330, 405, 423
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	33, 331
DpnI	GATC	3 cut(s)	47, 120, 189
DpnII	GATC	3 cut(s)	45, 118, 187
EaeI	YGGCCR	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	322
Eco24I	GRGCYC	2 cut(s)	407, 425
Eco47I	GGWCC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	4 cut(s)	121, 195, 322, 399
EcoT38I	GRGCYC	2 cut(s)	407, 425
FaeI	CATG	1 cut(s)	229
FaiI	YATR	1 cut(s)	227
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	225
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	4 cut(s)	202, 216, 235, 328
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	407, 425
Fsp4HI	GCNGC	4 cut(s)	202, 216, 235, 328
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	4 cut(s)	202, 216, 235, 328
HaeIII	GGCC	3 cut(s)	218, 322, 405
HapII	CCGG	2 cut(s)	153, 314
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	2 cut(s)	17, 274
Hin1II	CATG	1 cut(s)	229
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	192, 281
HpaII	CCGG	2 cut(s)	153, 314
HphI	GGTGA	2 cut(s)	113, 356
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	4 cut(s)	55, 262, 278, 415
Hpy99I	CGWCG	2 cut(s)	19, 276
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 231
HpyF3I	CTNAG	2 cut(s)	33, 331
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	2 cut(s)	17, 274
Hsp92II	CATG	1 cut(s)	229
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	3 cut(s)	45, 118, 187
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	47, 120, 189
MboI	GATC	3 cut(s)	45, 118, 187
MboII	GAAGA	2 cut(s)	57, 68
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	4 cut(s)	160, 370, 407, 425
MlyI	GAGTC	2 cut(s)	201, 290
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	6 cut(s)	42, 51, 258, 312, 321, 340
MspI	CCGG	2 cut(s)	153, 314
MspR9I	CCNGG	5 cut(s)	123, 154, 197, 324, 401
MvaI	CCWGG	4 cut(s)	123, 197, 324, 401
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	175, 231
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	3 cut(s)	45, 118, 187
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	5 cut(s)	120, 269, 309, 367, 405
NmuCI	GTSAC	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	322
PkrI	GCNGC	4 cut(s)	203, 217, 236, 329
PleI	GAGTC	2 cut(s)	200, 289
PpsI	GAGTC	2 cut(s)	200, 289
Psp6I	CCWGG	4 cut(s)	121, 195, 322, 399
PspGI	CCWGG	4 cut(s)	121, 195, 322, 399
PspN4I	GGNNCC	5 cut(s)	120, 269, 309, 367, 405
PspOMI	GGGCCC	1 cut(s)	403
PspPI	GGNCC	3 cut(s)	397, 403, 404
PsrI	GAACNNNNNNTAC	2 cut(s)	121, 153
PstNI	CAGNNNCTG	2 cut(s)	207, 338
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SatI	GCNGC	4 cut(s)	202, 216, 235, 328
Sau3AI	GATC	3 cut(s)	45, 118, 187
Sau96I	GGNCC	3 cut(s)	397, 403, 404
SchI	GAGTC	2 cut(s)	201, 290
ScrFI	CCNGG	5 cut(s)	123, 154, 197, 324, 401
SduI	GDGCHC	4 cut(s)	160, 370, 407, 425
SetI	ASST	4 cut(s)	62, 277, 361, 402
SfaNI	GCATC	1 cut(s)	213
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	3 cut(s)	55, 278, 437
SmoI	CTYRAG	3 cut(s)	55, 278, 437
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	6 cut(s)	4, 178, 215, 234, 237, 327
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	5 cut(s)	121, 152, 195, 322, 399
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	4 cut(s)	44, 140, 190, 261
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	3 cut(s)	218, 237, 330
TscAI	CASTG	2 cut(s)	165, 226
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	165, 226
VpaK11BI	GGWCC	1 cut(s)	397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
ZraI	GACGTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.