Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Reverse (-)

45134355 .. 45136287

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACGGGGATGCTGGATGGATGGTGGAATGGCCAGCACTTGCCTGGAGCGGCGAGCACGCCAACGGTGATTAGGAGAGGTGGTGATGCTCGTCGAAAACTGGATCTGCCATCAGGGAGGAGGAAAAGAAGGCCGAAGAGCAGAGAGGAGGAAGAGGAAGAAGAGCCTTCGAGCATGGTCCAGGCCATCTCGTCCTTTTACCCGTTACTCTCCAAGACGTCGAGGTCTTCGATGCGTGTTGAAGTGACGTCATTCATCCTTCCTCAGGTTGGTTCGATCTGGGTCTTGAGGTCGCCTTCGGTTCGTCATCCATTTGGATTGGGGGCTGTTGGTGACTGGAAAATCTGGGATCCAGGGCGTAGTCGGTGTTCGATCCGTCCTTCCGGGGCGCTGAAGAGGAGTTGGGAGCGGTGTAGGGATCGGGTCCTGGGCAACATCTGTACTGCGGTGCTGGGTTATCTCCGTCCAAGAAGGGCACGGCTGAAACTGGATATAAACGGTGCTGGGTCTGGTGTTGATGGCGCTTGGTGCATCCCATATCTAGGCAGAATGGGTTCGGATTGCTTCCGGCGAATGATAGAGGCGCAGCTGTTAGACGGTGATGGCGGCGCATTATTCAGTTTGTTCTCGGTGACAAGGCAAATCTGCATGGAGGGCAGCGTTTGGTGTCAATCAGATGGTGTCGAGATGGTCCGGTTCCGACGAAGGGTGGTGCAGCAGTGGTTGGGGCCGAGGTCAGGGAGGCGAAGATCTGAATGGAGCAGCGTTTGGGCTGGAACTGCGATACATCTGGTGGAGGCGGCTGGAGTCGGGGTGGTGGGACCGGATTGTGCTTTCTCTGGCGACGGGCAGTGGTTCAGCTGTCGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.24

Weight (kDa)

10.18

Isoelectric Point (pI)

67.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AatII	GACGTC	2 cut(s)	221, 251
AccBSI	CCGCTC	2 cut(s)	50, 409
AciI	CCGC	5 cut(s)	50, 409, 446, 606, 800
AclWI	GGATC	5 cut(s)	111, 344, 357, 367, 426
AcoI	YGGCCR	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	2 cut(s)	218, 248
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	5 cut(s)	265, 269, 542, 706, 737
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	4 cut(s)	43, 180, 352, 426
AluBI	AGCT	2 cut(s)	589, 861
AluI	AGCT	2 cut(s)	589, 861
Alw21I	GWGCWC	1 cut(s)	59
AlwI	GGATC	5 cut(s)	111, 344, 357, 367, 426
AoxI	GGCC	4 cut(s)	31, 131, 183, 728
ApeKI	GCWGC	4 cut(s)	586, 657, 715, 762
Asp700I	GAANNNNTTC	1 cut(s)	553
AspLEI	GCGC	4 cut(s)	391, 524, 586, 611
AspS9I	GGNCC	5 cut(s)	178, 424, 691, 728, 821
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	5 cut(s)	79, 95, 344, 611, 643
AvaII	GGWCC	4 cut(s)	178, 424, 691, 821
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	4 cut(s)	598, 669, 727, 774
BccI	CCATC	8 cut(s)	11, 15, 118, 194, 512, 596, 671, 682
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	4 cut(s)	45, 182, 354, 428
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	1 cut(s)	542
BfoI	RGCGCY	2 cut(s)	392, 525
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	7 cut(s)	51, 587, 607, 658, 716, 763, 801
BlsI	GCNGC	7 cut(s)	52, 588, 608, 659, 717, 764, 802
Bme1390I	CCNGG	5 cut(s)	45, 182, 354, 385, 428
Bme18I	GGWCC	4 cut(s)	178, 424, 691, 821
BmgT120I	GGNCC	5 cut(s)	178, 424, 691, 728, 821
BmiI	GGNNCC	5 cut(s)	351, 425, 698, 729, 822
BmrFI	CCNGG	5 cut(s)	45, 182, 354, 385, 428
BmsI	GCATC	3 cut(s)	76, 222, 540
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	2 cut(s)	66, 825
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	218, 248
BsaJI	CCNNGG	4 cut(s)	353, 384, 427, 731
BsaWI	WCCGGW	2 cut(s)	693, 823
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 798, 828
Bsc4I	CCNNNNNNNGG	5 cut(s)	265, 269, 542, 706, 737
Bse1I	ACTGG	3 cut(s)	105, 341, 492
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	4 cut(s)	45, 182, 354, 428
BseDI	CCNNGG	4 cut(s)	353, 384, 427, 731
BseGI	GGATG	6 cut(s)	15, 22, 26, 255, 307, 531
BseLI	CCNNNNNNNGG	5 cut(s)	265, 269, 542, 706, 737
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	105, 341, 492
BseRI	GAGGAG	3 cut(s)	133, 161, 412
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	4 cut(s)	598, 669, 727, 774
BseYI	CCCAGC	2 cut(s)	451, 503
BsgI	GTGCAG	1 cut(s)	734
BshFI	GGCC	4 cut(s)	33, 133, 185, 730
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	4 cut(s)	384, 568, 694, 824
BslFI	GGGAC	1 cut(s)	834
BslI	CCNNNNNNNGG	5 cut(s)	265, 269, 542, 706, 737
BsmFI	GGGAC	1 cut(s)	834
BsnI	GGCC	4 cut(s)	33, 133, 185, 730
Bsp1286I	GDGCHC	2 cut(s)	59, 478
Bsp143I	GATC	6 cut(s)	103, 276, 349, 372, 418, 749
BspACI	CCGC	5 cut(s)	50, 409, 446, 606, 800
BspANI	GGCC	4 cut(s)	33, 133, 185, 730
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	5 cut(s)	351, 425, 698, 729, 822
BspPI	GGATC	5 cut(s)	111, 344, 357, 367, 426
BspQI	GCTCTTC	2 cut(s)	131, 156
BsrBI	CCGCTC	2 cut(s)	50, 409
BsrI	ACTGG	3 cut(s)	105, 341, 492
BssECI	CCNNGG	4 cut(s)	353, 384, 427, 731
BssMI	GATC	6 cut(s)	103, 276, 349, 372, 418, 749
BssNI	GRCGYC	2 cut(s)	218, 248
Bst2UI	CCWGG	4 cut(s)	45, 182, 354, 428
Bst4CI	ACNGT	3 cut(s)	67, 500, 599
Bst6I	CTCTTC	4 cut(s)	131, 147, 156, 389
BstACI	GRCGYC	2 cut(s)	218, 248
BstC8I	GCNNGC	3 cut(s)	35, 55, 59
BstDEI	CTNAG	1 cut(s)	264
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	6 cut(s)	15, 22, 26, 255, 307, 531
BstH2I	RGCGCY	2 cut(s)	392, 525
BstHHI	GCGC	4 cut(s)	391, 524, 586, 611
BstKTI	GATC	6 cut(s)	106, 279, 352, 375, 421, 752
BstMBI	GATC	6 cut(s)	103, 276, 349, 372, 418, 749
BstMWI	GCNNNNNNNGC	4 cut(s)	528, 654, 779, 867
BstNI	CCWGG	4 cut(s)	45, 182, 354, 428
BstSCI	CCNGG	5 cut(s)	43, 180, 352, 383, 426
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	4 cut(s)	598, 669, 727, 774
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	3 cut(s)	103, 349, 749
BstYI	RGATCY	3 cut(s)	103, 349, 749
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	33, 133, 185, 730
BtsCI	GGATG	6 cut(s)	15, 22, 26, 255, 307, 531
BtsI	GCAGTG	2 cut(s)	725, 857
BtsIMutI	CAGTG	2 cut(s)	725, 857
Cac8I	GCNNGC	3 cut(s)	35, 55, 59
CfoI	GCGC	4 cut(s)	391, 524, 586, 611
Cfr13I	GGNCC	5 cut(s)	178, 424, 691, 728, 821
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	2 cut(s)	175, 649
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	6 cut(s)	105, 278, 351, 374, 420, 751
DpnII	GATC	6 cut(s)	103, 276, 349, 372, 418, 749
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	4 cut(s)	131, 147, 156, 389
EarI	CTCTTC	4 cut(s)	131, 147, 156, 389
Eco47I	GGWCC	4 cut(s)	178, 424, 691, 821
Eco57I	CTGAAG	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	264
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	4 cut(s)	43, 180, 352, 426
FaeI	CATG	2 cut(s)	178, 652
FaiI	YATR	4 cut(s)	176, 494, 538, 650
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	2 cut(s)	174, 648
Fnu4HI	GCNGC	7 cut(s)	51, 587, 607, 658, 716, 763, 801
FokI	GGATG	6 cut(s)	22, 29, 33, 242, 294, 518
Fsp4HI	GCNGC	7 cut(s)	51, 587, 607, 658, 716, 763, 801
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	4 cut(s)	390, 523, 585, 610
GluI	GCNGC	7 cut(s)	51, 587, 607, 658, 716, 763, 801
GsaI	CCCAGC	2 cut(s)	455, 507
GsuI	CTGGAG	2 cut(s)	66, 825
HaeII	RGCGCY	2 cut(s)	392, 525
HaeIII	GGCC	4 cut(s)	33, 133, 185, 730
HapII	CCGG	4 cut(s)	384, 568, 694, 824
HhaI	GCGC	4 cut(s)	391, 524, 586, 611
Hin1I	GRCGYC	2 cut(s)	218, 248
Hin1II	CATG	2 cut(s)	178, 652
Hin6I	GCGC	4 cut(s)	389, 522, 584, 609
HinP1I	GCGC	4 cut(s)	389, 522, 584, 609
HinfI	GANTC	1 cut(s)	807
HpaII	CCGG	4 cut(s)	384, 568, 694, 824
HphI	GGTGA	5 cut(s)	79, 95, 344, 611, 643
Hpy188I	TCNGA	4 cut(s)	559, 676, 701, 754
Hpy188III	TCNNGA	2 cut(s)	286, 685
Hpy99I	CGWCG	4 cut(s)	96, 223, 705, 848
HpyAV	CCTTC	7 cut(s)	123, 177, 269, 306, 390, 465, 699
HpyCH4III	ACNGT	3 cut(s)	67, 500, 599
HpyCH4IV	ACGT	2 cut(s)	218, 248
HpyCH4V	TGCA	3 cut(s)	531, 648, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	528, 654, 779, 867
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	2 cut(s)	218, 248
Hsp92I	GRCGYC	2 cut(s)	218, 248
Hsp92II	CATG	2 cut(s)	178, 652
HspAI	GCGC	4 cut(s)	389, 522, 584, 609
Kzo9I	GATC	6 cut(s)	103, 276, 349, 372, 418, 749
LguI	GCTCTTC	2 cut(s)	131, 156
LmnI	GCTCC	3 cut(s)	47, 406, 759
Lsp1109I	GCAGC	4 cut(s)	598, 669, 727, 774
LweI	GCATC	3 cut(s)	76, 222, 540
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	2 cut(s)	218, 248
MaeIII	GTNAC	4 cut(s)	204, 244, 332, 631
MalI	GATC	6 cut(s)	105, 278, 351, 374, 420, 751
MbiI	CCGCTC	2 cut(s)	50, 409
MboI	GATC	6 cut(s)	103, 276, 349, 372, 418, 749
MboII	GAAGA	7 cut(s)	148, 164, 170, 173, 219, 406, 759
MflI	RGATCY	3 cut(s)	103, 349, 749
MhlI	GDGCHC	2 cut(s)	59, 478
MlsI	TGGCCA	1 cut(s)	33
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	816
MmeI	TCCRAC	1 cut(s)	724
Mox20I	TGGCCA	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	553
MscI	TGGCCA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	33
MspA1I	CMGCKG	2 cut(s)	589, 861
MspI	CCGG	4 cut(s)	384, 568, 694, 824
MspR9I	CCNGG	5 cut(s)	45, 182, 354, 385, 428
MvaI	CCWGG	4 cut(s)	45, 182, 354, 428
MwoI	GCNNNNNNNGC	4 cut(s)	528, 654, 779, 867
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	6 cut(s)	103, 276, 349, 372, 418, 749
NlaIII	CATG	2 cut(s)	178, 652
NlaIV	GGNNCC	5 cut(s)	351, 425, 698, 729, 822
NmeAIII	GCCGAG	1 cut(s)	756
NmuCI	GTSAC	3 cut(s)	244, 332, 631
PciSI	GCTCTTC	2 cut(s)	131, 156
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	553
PkrI	GCNGC	7 cut(s)	52, 588, 608, 659, 717, 764, 802
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PpuMI	RGGWCCY	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	4 cut(s)	43, 180, 352, 426
PspFI	CCCAGC	2 cut(s)	451, 503
PspGI	CCWGG	4 cut(s)	43, 180, 352, 426
PspN4I	GGNNCC	5 cut(s)	351, 425, 698, 729, 822
PspPI	GGNCC	5 cut(s)	178, 424, 691, 728, 821
PspPPI	RGGWCCY	1 cut(s)	424
PsrI	GAACNNNNNNTAC	2 cut(s)	352, 384
PsuI	RGATCY	3 cut(s)	103, 349, 749
PvuII	CAGCTG	2 cut(s)	589, 861
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SapI	GCTCTTC	2 cut(s)	131, 156
SatI	GCNGC	7 cut(s)	51, 587, 607, 658, 716, 763, 801
Sau3AI	GATC	6 cut(s)	103, 276, 349, 372, 418, 749
Sau96I	GGNCC	5 cut(s)	178, 424, 691, 728, 821
SchI	GAGTC	1 cut(s)	816
ScrFI	CCNGG	5 cut(s)	45, 182, 354, 385, 428
SduI	GDGCHC	2 cut(s)	59, 478
SetI	ASST	9 cut(s)	82, 221, 227, 251, 270, 293, 591, 737, 863
SfaNI	GCATC	3 cut(s)	76, 222, 540
SinI	GGWCC	4 cut(s)	178, 424, 691, 821
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
SsiI	CCGC	5 cut(s)	50, 409, 446, 606, 800
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	5 cut(s)	43, 180, 352, 383, 426
TaaI	ACNGT	3 cut(s)	67, 500, 599
TaiI	ACGT	2 cut(s)	221, 251
TaqI	TCGA	7 cut(s)	94, 170, 221, 230, 275, 371, 684
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	3 cut(s)	53, 609, 803
TscAI	CASTG	2 cut(s)	725, 857
TseFI	GTSAC	3 cut(s)	244, 332, 631
TseI	GCWGC	4 cut(s)	586, 657, 715, 762
Tsp45I	GTSAC	3 cut(s)	244, 332, 631
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	2 cut(s)	365, 452
TspRI	CASTG	2 cut(s)	725, 857
VpaK11BI	GGWCC	4 cut(s)	178, 424, 691, 821
XagI	CCTNNNNNAGG	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	553
XspI	CTAG	1 cut(s)	542
ZraI	GACGTC	2 cut(s)	219, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.