Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Reverse (-)

55555073 .. 55556689

Gene Structure 1617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACTAGTGGGGGTTGGGTGTGCTGTAGCCCTTCTTCGGTCCTCCTTGGGCACCGCCACAAGACTGATGAGGCAGGCGGCGACGTCTTGAGTCGTGCGAACAAATCTGGGACGGGGTTCCTCCGGCGAGGGTTTGCTGCTCAGCGATTGGGGGCGTGGACAAGGCAGATCTGGATGCCCAGAGAGATTTTAGGTGGCCAACCGTGGAACTGGGCCCTTTGCTCACGATGGGCCTTTGCTAGGGTTGGTTGGGCCTGTGTTATGTTGAATTGCTCAAGTAGGACTTTGGGCTGGGCCTTCCTTATTGGGGGTTTGCAGCTGGTGAATGAGCCTGAAGCTGTGAAGTTTTTGTCACATGTTGTCCTTTCTTCCCTTGAAGGGTTTGCTACCTGGTTGGATTACGATGGGGCTGTTAATCTTCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.62

Weight (kDa)

9.04

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	51
AciI	CCGC	2 cut(s)	55, 78
AcoI	YGGCCR	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	4 cut(s)	37, 240, 307, 378
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	268, 377
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	319, 338
AluI	AGCT	2 cut(s)	319, 338
AoxI	GGCC	5 cut(s)	196, 213, 231, 252, 294
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	137, 316
AspS9I	GGNCC	6 cut(s)	40, 213, 214, 231, 252, 294
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	2 cut(s)	54, 217
BalI	TGGCCA	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	217
BarI	GAAGNNNNNNTAC	2 cut(s)	19, 51
BbvI	GCAGC	2 cut(s)	124, 328
BccI	CCATC	2 cut(s)	222, 398
BciT130I	CCWGG	1 cut(s)	391
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 240
BfmI	CTRYAG	1 cut(s)	25
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	3 cut(s)	79, 138, 317
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	3 cut(s)	80, 139, 318
Bme1390I	CCNGG	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	6 cut(s)	40, 213, 214, 231, 252, 294
BmiI	GGNNCC	3 cut(s)	53, 119, 215
BmrFI	CCNGG	1 cut(s)	391
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	220
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	109, 259
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	46, 203
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 240, 307, 378
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	46, 203
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	4 cut(s)	37, 240, 307, 378
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	215
BseSI	GKGCMC	2 cut(s)	54, 217
BseXI	GCAGC	2 cut(s)	124, 328
BseYI	CCCAGC	1 cut(s)	291
BshFI	GGCC	5 cut(s)	198, 215, 233, 254, 296
BshNI	GGYRCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	4 cut(s)	37, 240, 307, 378
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	5 cut(s)	198, 215, 233, 254, 296
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	54, 217
Bsp143I	GATC	1 cut(s)	168
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	55, 78
BspANI	GGCC	5 cut(s)	198, 215, 233, 254, 296
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	53, 119, 215
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	46, 203
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	203
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	2 cut(s)	54, 217
BstV1I	GCAGC	2 cut(s)	124, 328
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	5 cut(s)	198, 215, 233, 254, 296
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	76
Cfr13I	GGNCC	6 cut(s)	40, 213, 214, 231, 252, 294
CsiI	ACCWGGT	1 cut(s)	389
CviAII	CATG	2 cut(s)	356, 422
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	2 cut(s)	359, 425
FaiI	YATR	3 cut(s)	263, 357, 423
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	355, 421
Fnu4HI	GCNGC	3 cut(s)	79, 138, 317
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	3 cut(s)	79, 138, 317
FspBI	CTAG	2 cut(s)	6, 240
GluI	GCNGC	3 cut(s)	79, 138, 317
GsaI	CCCAGC	1 cut(s)	295
HaeIII	GGCC	5 cut(s)	198, 215, 233, 254, 296
HapII	CCGG	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	359, 425
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188III	TCNNGA	3 cut(s)	88, 172, 225
Hpy8I	GTNNAC	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	42, 307, 371
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	359, 425
Kzo9I	GATC	1 cut(s)	168
Lsp1109I	GCAGC	2 cut(s)	124, 328
LweI	GCATC	1 cut(s)	165
MabI	ACCWGGT	1 cut(s)	389
MaeI	CTAG	2 cut(s)	6, 240
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	351
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	3 cut(s)	27, 360, 410
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	54, 217
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	1 cut(s)	268
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	4 cut(s)	53, 64, 122, 131
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	2 cut(s)	414, 427
Msp20I	TGGCCA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	2 cut(s)	359, 425
NlaIV	GGNNCC	3 cut(s)	53, 119, 215
NmuCI	GTSAC	1 cut(s)	351
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	80, 139, 318
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	53, 119, 215
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	6 cut(s)	40, 213, 214, 231, 252, 294
PsuI	RGATCY	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	319
SaqAI	TTAA	2 cut(s)	414, 427
SatI	GCNGC	3 cut(s)	79, 138, 317
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	6 cut(s)	40, 213, 214, 231, 252, 294
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	2 cut(s)	54, 217
SetI	ASST	5 cut(s)	87, 196, 321, 340, 392
SexAI	ACCWGGT	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	88, 274
SmoI	CTYRAG	2 cut(s)	88, 274
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	55, 78
SspMI	CTAG	2 cut(s)	6, 240
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	87
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	268
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	414, 427
Tru9I	TTAA	2 cut(s)	414, 427
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	2 cut(s)	137, 316
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	238
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	2 cut(s)	6, 240
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.