Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Forward (+)

17621420 .. 17622307

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGCAAATTTCCGGCACTTCCCCTAGTGTCGCAGCCTTTGAGCATGGTCTAGGCCGTCTCGTCCTTTTACCCGTTACTCTCCAAGACGTCGAGGTTGGTTCGATCTGGGTCTTAAGGTTGCCTTCGGTTCGTCATCCATTTGGATTGGGGGCTGTTGGTGACTGGAAAATCTGGGATCCAGGGCGTAGTCGGTGTTCGATCCGTCCTTCCGGGGAGCTGAAGAGGCGTTGGGAGCGGTGCAGGGATCGGGTCCTGGGCAACATCTATACTGCGGTGCTAGGTCATCTCCGTCCAAGAAGGGCACGGCTGAAACTGGATATAAACGGTGTTGGGTCTAGTGTTGATGGCACTTGGTGCGTCCCAGATCTAGGCAGAATGGGTTCGAATTGCTTCCAGCGAATGATGGACTCGCGGTTGTTAGACGGTGATGGCGGCGCATTATTCAGTCTGTTCTCGGTGACAAGGCAAATCGGCGTGGAGGGCAGCGTTTGGTGTCAATCAGATGGTGTCGGGATGGTCCGGTTCCGACGAAGGGTGGTGCAGCAGTGGTCGGGGCCGAGGTCAGGGAGGCGAAGATCTGAATGGAGCAGCGTTTGGGCTTTGGGCTGGAACTGCGATACATCTGGTGGAGACGGCTGGAGTCGGGGTGGTGGGACCGGACTACGCTTTCTCCTGCGACGGGCAGTGGTGCAGCTGTCGGGGCCGATAGACTTTGGGCTGGGCCTTCCTTCTTGGGGTTGTGCAGCGGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.68

Weight (kDa)

10.55

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	238
AccII	CGCG	1 cut(s)	415
AciI	CCGC	5 cut(s)	238, 275, 415, 435, 749
AclWI	GGATC	4 cut(s)	173, 186, 196, 255
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	357
AfiI	CCNNNNNNNGG	5 cut(s)	371, 535, 566, 682, 737
AflII	CTTAAG	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	181, 255
AluBI	AGCT	2 cut(s)	220, 697
AluI	AGCT	2 cut(s)	220, 697
Alw26I	GTCTC	2 cut(s)	65, 627
AlwI	GGATC	4 cut(s)	173, 186, 196, 255
AoxI	GGCC	4 cut(s)	55, 557, 704, 724
ApeKI	GCWGC	6 cut(s)	35, 486, 544, 591, 694, 746
ApoI	RAATTY	1 cut(s)	9
Asp700I	GAANNNNTTC	2 cut(s)	382, 392
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	6 cut(s)	253, 520, 557, 657, 704, 724
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	3 cut(s)	173, 440, 472
AsuII	TTCGAA	1 cut(s)	386
AvaII	GGWCC	3 cut(s)	253, 520, 657
BaeGI	GKGCMC	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	178
BbvI	GCAGC	5 cut(s)	47, 498, 556, 603, 706
BccI	CCATC	5 cut(s)	341, 400, 425, 500, 511
BceAI	ACGGC	3 cut(s)	42, 323, 652
BciT130I	CCWGG	2 cut(s)	183, 257
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	65, 627
BfaI	CTAG	5 cut(s)	27, 53, 281, 339, 371
BfrI	CTTAAG	1 cut(s)	115
BglII	AGATCT	2 cut(s)	367, 578
BisI	GCNGC	7 cut(s)	36, 436, 487, 545, 592, 695, 747
BlsI	GCNGC	7 cut(s)	37, 437, 488, 546, 593, 696, 748
Bme1390I	CCNGG	3 cut(s)	183, 214, 257
Bme18I	GGWCC	3 cut(s)	253, 520, 657
BmgT120I	GGNCC	6 cut(s)	253, 520, 557, 657, 704, 724
BmiI	GGNNCC	6 cut(s)	180, 254, 527, 558, 658, 705
BmrFI	CCNGG	3 cut(s)	183, 214, 257
BpmI	CTGGAG	1 cut(s)	661
Bpu14I	TTCGAA	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	182, 213, 256, 560
BsaWI	WCCGGW	2 cut(s)	522, 659
BsaXI	ACNNNNNCTCC	4 cut(s)	634, 657, 664, 687
Bsc4I	CCNNNNNNNGG	5 cut(s)	371, 535, 566, 682, 737
Bse1I	ACTGG	2 cut(s)	170, 321
BseBI	CCWGG	2 cut(s)	183, 257
BseDI	CCNNGG	4 cut(s)	182, 213, 256, 560
BseGI	GGATG	2 cut(s)	136, 522
BseLI	CCNNNNNNNGG	5 cut(s)	371, 535, 566, 682, 737
BseNI	ACTGG	2 cut(s)	170, 321
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	5 cut(s)	47, 498, 556, 603, 706
BseYI	CCCAGC	1 cut(s)	721
BsgI	GTGCAG	3 cut(s)	262, 563, 713
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	4 cut(s)	57, 559, 706, 726
BsiSI	CCGG	4 cut(s)	15, 213, 523, 660
BslFI	GGGAC	2 cut(s)	347, 670
BslI	CCNNNNNNNGG	5 cut(s)	371, 535, 566, 682, 737
BsmAI	GTCTC	2 cut(s)	65, 627
BsmBI	CGTCTC	2 cut(s)	65, 627
BsmFI	GGGAC	2 cut(s)	347, 670
BsnI	GGCC	4 cut(s)	57, 559, 706, 726
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	6 cut(s)	105, 178, 201, 247, 367, 578
BspACI	CCGC	5 cut(s)	238, 275, 415, 435, 749
BspANI	GGCC	4 cut(s)	57, 559, 706, 726
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	6 cut(s)	180, 254, 527, 558, 658, 705
BspPI	GGATC	4 cut(s)	173, 186, 196, 255
BspT104I	TTCGAA	1 cut(s)	386
BspTI	CTTAAG	1 cut(s)	115
BsrBI	CCGCTC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	170, 321
BssECI	CCNNGG	4 cut(s)	182, 213, 256, 560
BssMI	GATC	6 cut(s)	105, 178, 201, 247, 367, 578
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	183, 257
Bst4CI	ACNGT	2 cut(s)	329, 428
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	136, 522
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	6 cut(s)	108, 181, 204, 250, 370, 581
BstMAI	GTCTC	2 cut(s)	65, 627
BstMBI	GATC	6 cut(s)	105, 178, 201, 247, 367, 578
BstMWI	GCNNNNNNNGC	6 cut(s)	226, 235, 357, 483, 615, 703
BstNI	CCWGG	2 cut(s)	183, 257
BstSCI	CCNGG	3 cut(s)	181, 212, 255
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	5 cut(s)	47, 498, 556, 603, 706
BstX2I	RGATCY	3 cut(s)	178, 367, 578
BstYI	RGATCY	3 cut(s)	178, 367, 578
BsuRI	GGCC	4 cut(s)	57, 559, 706, 726
BtsCI	GGATG	2 cut(s)	136, 522
BtsI	GCAGTG	2 cut(s)	554, 693
BtsIMutI	CAGTG	2 cut(s)	554, 693
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	6 cut(s)	253, 520, 557, 657, 704, 724
CseI	GACGC	1 cut(s)	349
CviAII	CATG	1 cut(s)	47
DpnI	GATC	6 cut(s)	107, 180, 203, 249, 369, 580
DpnII	GATC	6 cut(s)	105, 178, 201, 247, 367, 578
DraIII	CACNNNGTG	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco47I	GGWCC	3 cut(s)	253, 520, 657
Eco57I	CTGAAG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	181, 255
Esp3I	CGTCTC	2 cut(s)	65, 627
FaeI	CATG	1 cut(s)	50
FaiI	YATR	3 cut(s)	48, 270, 323
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	2 cut(s)	347, 670
FatI	CATG	1 cut(s)	46
FauI	CCCGC	1 cut(s)	742
Fnu4HI	GCNGC	7 cut(s)	36, 436, 487, 545, 592, 695, 747
FokI	GGATG	2 cut(s)	123, 529
Fsp4HI	GCNGC	7 cut(s)	36, 436, 487, 545, 592, 695, 747
FspBI	CTAG	5 cut(s)	27, 53, 281, 339, 371
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	7 cut(s)	36, 436, 487, 545, 592, 695, 747
GsaI	CCCAGC	1 cut(s)	725
GsuI	CTGGAG	1 cut(s)	661
HaeIII	GGCC	4 cut(s)	57, 559, 706, 726
HapII	CCGG	4 cut(s)	15, 213, 523, 660
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	2 cut(s)	410, 643
HpaII	CCGG	4 cut(s)	15, 213, 523, 660
HphI	GGTGA	3 cut(s)	173, 440, 472
Hpy188I	TCNGA	3 cut(s)	505, 530, 583
Hpy188III	TCNNGA	1 cut(s)	514
Hpy99I	CGWCG	3 cut(s)	95, 534, 684
HpyAV	CCTTC	6 cut(s)	135, 219, 294, 528, 737, 741
HpyCH4III	ACNGT	2 cut(s)	329, 428
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	243, 544, 694, 746
HpyF10VI	GCNNNNNNNGC	6 cut(s)	226, 235, 357, 483, 615, 703
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	1 cut(s)	438
Kzo9I	GATC	6 cut(s)	105, 178, 201, 247, 367, 578
LmnI	GCTCC	4 cut(s)	4, 217, 235, 588
Lsp1109I	GCAGC	5 cut(s)	47, 498, 556, 603, 706
MaeI	CTAG	5 cut(s)	27, 53, 281, 339, 371
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	76, 161, 460
MalI	GATC	6 cut(s)	107, 180, 203, 249, 369, 580
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	6 cut(s)	105, 178, 201, 247, 367, 578
MboII	GAAGA	2 cut(s)	235, 588
MflI	RGATCY	3 cut(s)	178, 367, 578
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	2 cut(s)	9, 388
MlyI	GAGTC	2 cut(s)	404, 652
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	5 cut(s)	88, 219, 475, 555, 564
MroXI	GAANNNNTTC	2 cut(s)	382, 392
MseI	TTAA	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	697, 749
MspCI	CTTAAG	1 cut(s)	115
MspI	CCGG	4 cut(s)	15, 213, 523, 660
MspR9I	CCNGG	3 cut(s)	183, 214, 257
MvaI	CCWGG	2 cut(s)	183, 257
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	6 cut(s)	226, 235, 357, 483, 615, 703
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	6 cut(s)	105, 178, 201, 247, 367, 578
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	6 cut(s)	180, 254, 527, 558, 658, 705
NmeAIII	GCCGAG	1 cut(s)	585
NmuCI	GTSAC	2 cut(s)	161, 460
NspV	TTCGAA	1 cut(s)	386
PdmI	GAANNNNTTC	2 cut(s)	382, 392
PkrI	GCNGC	7 cut(s)	37, 437, 488, 546, 593, 696, 748
PleI	GAGTC	2 cut(s)	404, 651
PpsI	GAGTC	2 cut(s)	404, 651
PpuMI	RGGWCCY	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	181, 255
PspFI	CCCAGC	1 cut(s)	721
PspGI	CCWGG	2 cut(s)	181, 255
PspN4I	GGNNCC	6 cut(s)	180, 254, 527, 558, 658, 705
PspPI	GGNCC	6 cut(s)	253, 520, 557, 657, 704, 724
PspPPI	RGGWCCY	1 cut(s)	253
PsrI	GAACNNNNNNTAC	2 cut(s)	181, 213
PsuI	RGATCY	3 cut(s)	178, 367, 578
PvuII	CAGCTG	1 cut(s)	697
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	7 cut(s)	36, 436, 487, 545, 592, 695, 747
Sau3AI	GATC	6 cut(s)	105, 178, 201, 247, 367, 578
Sau96I	GGNCC	6 cut(s)	253, 520, 557, 657, 704, 724
SchI	GAGTC	2 cut(s)	404, 652
ScrFI	CCNGG	3 cut(s)	183, 214, 257
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	7 cut(s)	93, 99, 122, 222, 286, 566, 699
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	3 cut(s)	253, 520, 657
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	2 cut(s)	9, 388
SsiI	CCGC	5 cut(s)	238, 275, 415, 435, 749
SspMI	CTAG	5 cut(s)	27, 53, 281, 339, 371
StyD4I	CCNGG	3 cut(s)	181, 212, 255
TaaI	ACNGT	2 cut(s)	329, 428
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	93, 104, 200, 386
TasI	AATT	2 cut(s)	9, 388
TauI	GCSGC	1 cut(s)	438
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	554, 693
TseFI	GTSAC	2 cut(s)	161, 460
TseI	GCWGC	6 cut(s)	35, 486, 544, 591, 694, 746
Tsp45I	GTSAC	2 cut(s)	161, 460
TspGWI	ACGGA	2 cut(s)	194, 281
TspRI	CASTG	2 cut(s)	554, 693
Vha464I	CTTAAG	1 cut(s)	115
VpaK11BI	GGWCC	3 cut(s)	253, 520, 657
XapI	RAATTY	1 cut(s)	9
XmnI	GAANNNNTTC	2 cut(s)	382, 392
XspI	CTAG	5 cut(s)	27, 53, 281, 339, 371
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.