Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Reverse (-)

57630880 .. 57633481

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCATGGGCATCCAACCAAGCTCTACGCAACTCTCTTGGTCTCTCATCTCCTCCTTCCTCAATCCGGATTTCTATTCATTGTCGCCCTCGTCGGGGGGCGGGAGGGATCATTGGAAAACAACCACAAGGCTAGCAATCTCTACATAGTACCACCAAACCATCTCACGAGGCCGTTCATTCCTCCTCCAATTGGTTCGATCTGGGCTTTGAGGTCGCCTTCAGTTCGTCGTCCTCTTGAATTAGGGGCTGTTGGTGACTGGCAAGTTTGGGATCCAGGGATCCTGACGGCATCTTGTCTTCCAGTATGTCTCAAACTACCAGTGGCGCTGGTAGATTTGGTGAGATTGTGGTGTTTGTGCTTGGAGAAGAGGTCATTTTTCGGGTCCGGTCAGACTTTGCTTAACTCCCTTGGTAGGCAAGATTCGACGCCGGGAAGATGCAGAAAGGTAGATGGTGGGTTGCCGGTCTGTGGGTCAGCTTTGATAGGAGCCATCGTCGCCGGGGCTGGTTCGATCGTGGTTGGTGTCAGGCTTAGGAGTCGGTTTTCAATCTGGCCTTCCAGGGCGCTGAAGAGAAGATGGATGCGGTGCCTGGGCGACATATGTACTGCGATCAGTATTGGCATTGGTGGCGGCGGGTGTTGTCGGGTTGATGGGGCCGAGAAGTTCTTTCTCAAACGTAGGGTGGTGGAGCGGTGGTCGAACCCGAGGTCAGAGACAGTCTGGGTGCCAAGAGTACTTTTGGGAGCCAAAAGGTGGGTTTGGGCCTATGTTTTGTTGGACTGCTCAAATAGGGCATTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

29.32

Weight (kDa)

10.19

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	588, 727
AccB7I	CCANNNNNTGG	1 cut(s)	756
AccBSI	CCGCTC	1 cut(s)	694
AccIII	TCCGGA	1 cut(s)	65
AciI	CCGC	5 cut(s)	100, 586, 633, 636, 694
AclWI	GGATC	5 cut(s)	115, 266, 274, 279, 287
AcuI	CTGAAG	2 cut(s)	204, 590
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	3 cut(s)	150, 607, 738
AfiI	CCNNNNNNNGG	7 cut(s)	65, 93, 94, 191, 414, 470, 756
AgsI	TTSAA	2 cut(s)	239, 549
AjnI	CCWGG	3 cut(s)	274, 560, 591
AluBI	AGCT	2 cut(s)	22, 479
AluI	AGCT	2 cut(s)	22, 479
Alw26I	GTCTC	3 cut(s)	46, 314, 710
AlwI	GGATC	5 cut(s)	115, 266, 274, 279, 287
Ama87I	CYCGRG	1 cut(s)	706
Aor13HI	TCCGGA	1 cut(s)	65
AoxI	GGCC	4 cut(s)	170, 554, 657, 765
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AspLEI	GCGC	2 cut(s)	328, 568
AspS9I	GGNCC	3 cut(s)	384, 657, 765
AsuC2I	CCSGG	2 cut(s)	432, 502
AsuHPI	GGTGA	2 cut(s)	266, 352
AsuNHI	GCTAGC	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	384
BamHI	GGATCC	2 cut(s)	271, 279
BanI	GGYRCC	2 cut(s)	588, 727
BauI	CACGAG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	290
BccI	CCATC	5 cut(s)	168, 446, 500, 573, 647
BceAI	ACGGC	2 cut(s)	157, 303
BciT130I	CCWGG	3 cut(s)	276, 562, 593
BcnI	CCSGG	2 cut(s)	432, 502
BcoDI	GTCTC	3 cut(s)	46, 314, 710
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	2 cut(s)	329, 569
BisI	GCNGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	635
BmcAI	AGTACT	1 cut(s)	738
Bme1390I	CCNGG	5 cut(s)	276, 432, 502, 562, 593
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	3 cut(s)	384, 657, 765
BmiI	GGNNCC	8 cut(s)	273, 281, 385, 490, 590, 658, 729, 748
BmrFI	CCNGG	5 cut(s)	276, 432, 502, 562, 593
BmsI	GCATC	4 cut(s)	19, 299, 428, 573
BmtI	GCTAGC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	533
BpuMI	CCSGG	2 cut(s)	432, 502
BsaHI	GRCGYC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	6 cut(s)	275, 409, 501, 561, 592, 707
BsaWI	WCCGGW	2 cut(s)	65, 386
BsaXI	ACNNNNNCTCC	6 cut(s)	356, 386, 480, 510, 683, 713
Bsc4I	CCNNNNNNNGG	7 cut(s)	65, 93, 94, 191, 414, 470, 756
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	3 cut(s)	263, 302, 320
BseAI	TCCGGA	1 cut(s)	65
BseBI	CCWGG	3 cut(s)	276, 562, 593
BseDI	CCNNGG	6 cut(s)	275, 409, 501, 561, 592, 707
BseGI	GGATG	2 cut(s)	10, 588
BseLI	CCNNNNNNNGG	7 cut(s)	65, 93, 94, 191, 414, 470, 756
BseNI	ACTGG	3 cut(s)	263, 302, 320
BseRI	GAGGAG	2 cut(s)	41, 174
Bsh1285I	CGRYCG	1 cut(s)	516
BshFI	GGCC	4 cut(s)	172, 556, 659, 767
BshNI	GGYRCC	2 cut(s)	588, 727
BsiEI	CGRYCG	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	5 cut(s)	66, 387, 431, 464, 501
BslI	CCNNNNNNNGG	7 cut(s)	65, 93, 94, 191, 414, 470, 756
BsmAI	GTCTC	3 cut(s)	46, 314, 710
BsnI	GGCC	4 cut(s)	172, 556, 659, 767
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	706
Bsp13I	TCCGGA	1 cut(s)	65
Bsp143I	GATC	6 cut(s)	107, 198, 271, 279, 513, 612
BspACI	CCGC	5 cut(s)	100, 586, 633, 636, 694
BspANI	GGCC	4 cut(s)	172, 556, 659, 767
BspEI	TCCGGA	1 cut(s)	65
BspLI	GGNNCC	8 cut(s)	273, 281, 385, 490, 590, 658, 729, 748
BspOI	GCTAGC	1 cut(s)	135
BspPI	GGATC	5 cut(s)	115, 266, 274, 279, 287
BspT107I	GGYRCC	2 cut(s)	588, 727
BspTNI	GGTCTC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	694
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	3 cut(s)	263, 302, 320
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	6 cut(s)	275, 409, 501, 561, 592, 707
BssMI	GATC	6 cut(s)	107, 198, 271, 279, 513, 612
BssNI	GRCGYC	1 cut(s)	428
BssSI	CACGAG	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	409
Bst2BI	CACGAG	1 cut(s)	166
Bst2UI	CCWGG	3 cut(s)	276, 562, 593
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	2 cut(s)	362, 566
BstACI	GRCGYC	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	10, 588
BstH2I	RGCGCY	2 cut(s)	329, 569
BstHHI	GCGC	2 cut(s)	328, 568
BstKTI	GATC	6 cut(s)	110, 201, 274, 282, 516, 615
BstMAI	GTCTC	3 cut(s)	46, 314, 710
BstMBI	GATC	6 cut(s)	107, 198, 271, 279, 513, 612
BstMCI	CGRYCG	1 cut(s)	516
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 630
BstNI	CCWGG	3 cut(s)	276, 562, 593
BstSCI	CCNGG	5 cut(s)	274, 430, 500, 560, 591
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	271, 279
BstYI	RGATCY	2 cut(s)	271, 279
BsuRI	GGCC	4 cut(s)	172, 556, 659, 767
BtsCI	GGATG	2 cut(s)	10, 588
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	328, 568
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	3 cut(s)	384, 657, 765
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	3 cut(s)	149, 606, 737
CviAII	CATG	1 cut(s)	5
CviQI	GTAC	3 cut(s)	149, 606, 737
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	6 cut(s)	109, 200, 273, 281, 515, 614
DpnII	GATC	6 cut(s)	107, 198, 271, 279, 513, 612
Eam1104I	CTCTTC	2 cut(s)	362, 566
EarI	CTCTTC	2 cut(s)	362, 566
Eco130I	CCWWGG	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	2 cut(s)	204, 590
Eco88I	CYCGRG	1 cut(s)	706
EcoRII	CCWGG	3 cut(s)	274, 560, 591
EcoT14I	CCWWGG	1 cut(s)	409
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	8
FaiI	YATR	6 cut(s)	6, 146, 307, 602, 604, 771
FatI	CATG	1 cut(s)	4
FauI	CCCGC	2 cut(s)	93, 629
FauNDI	CATATG	1 cut(s)	602
Fnu4HI	GCNGC	1 cut(s)	634
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	1 cut(s)	634
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	2 cut(s)	327, 567
GluI	GCNGC	1 cut(s)	634
HaeII	RGCGCY	2 cut(s)	329, 569
HaeIII	GGCC	4 cut(s)	172, 556, 659, 767
HapII	CCGG	5 cut(s)	66, 387, 431, 464, 501
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	2 cut(s)	328, 568
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	2 cut(s)	326, 566
HinP1I	GCGC	2 cut(s)	326, 566
HinfI	GANTC	2 cut(s)	422, 538
HpaII	CCGG	5 cut(s)	66, 387, 431, 464, 501
HphI	GGTGA	2 cut(s)	266, 352
Hpy188I	TCNGA	2 cut(s)	393, 715
Hpy188III	TCNNGA	4 cut(s)	66, 166, 236, 283
Hpy99I	CGWCG	4 cut(s)	95, 231, 430, 500
HpyAV	CCTTC	3 cut(s)	65, 228, 567
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	2 cut(s)	4, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 630
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	1 cut(s)	679
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	2 cut(s)	326, 566
Kpn2I	TCCGGA	1 cut(s)	65
Kzo9I	GATC	6 cut(s)	107, 198, 271, 279, 513, 612
LmnI	GCTCC	3 cut(s)	488, 691, 746
LweI	GCATC	4 cut(s)	19, 299, 428, 573
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	6 cut(s)	109, 200, 273, 281, 515, 614
MbiI	CCGCTC	1 cut(s)	694
MboI	GATC	6 cut(s)	107, 198, 271, 279, 513, 612
MboII	GAAGA	5 cut(s)	290, 379, 447, 583, 588
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	2 cut(s)	271, 279
MluCI	AATT	2 cut(s)	189, 239
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	2 cut(s)	38, 759
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	65
MseI	TTAA	1 cut(s)	402
MspI	CCGG	5 cut(s)	66, 387, 431, 464, 501
MspR9I	CCNGG	5 cut(s)	276, 432, 502, 562, 593
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	3 cut(s)	276, 562, 593
MwoI	GCNNNNNNNGC	2 cut(s)	497, 630
NciI	CCSGG	2 cut(s)	432, 502
NdeI	CATATG	1 cut(s)	602
NdeII	GATC	6 cut(s)	107, 198, 271, 279, 513, 612
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	8 cut(s)	273, 281, 385, 490, 590, 658, 729, 748
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	756
PkrI	GCNGC	1 cut(s)	635
Ple19I	CGATCG	1 cut(s)	516
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
Psp6I	CCWGG	3 cut(s)	274, 560, 591
PspGI	CCWGG	3 cut(s)	274, 560, 591
PspN4I	GGNNCC	8 cut(s)	273, 281, 385, 490, 590, 658, 729, 748
PspPI	GGNCC	3 cut(s)	384, 657, 765
PsuI	RGATCY	2 cut(s)	271, 279
PvuI	CGATCG	1 cut(s)	516
RsaI	GTAC	3 cut(s)	150, 607, 738
RsaNI	GTAC	3 cut(s)	149, 606, 737
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	6 cut(s)	107, 198, 271, 279, 513, 612
Sau96I	GGNCC	3 cut(s)	384, 657, 765
ScaI	AGTACT	1 cut(s)	738
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	5 cut(s)	276, 432, 502, 562, 593
SetI	ASST	8 cut(s)	24, 215, 374, 450, 481, 682, 713, 758
SfaNI	GCATC	4 cut(s)	19, 299, 428, 573
SinI	GGWCC	1 cut(s)	384
Sse9I	AATT	2 cut(s)	189, 239
SsiI	CCGC	5 cut(s)	100, 586, 633, 636, 694
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	5 cut(s)	274, 430, 500, 560, 591
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	4 cut(s)	197, 425, 512, 701
TasI	AATT	2 cut(s)	189, 239
TatI	WGTACW	2 cut(s)	605, 736
TauI	GCSGC	1 cut(s)	636
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	67, 166
TspRI	CASTG	1 cut(s)	327
Van91I	CCANNNNNTGG	1 cut(s)	756
VpaK11BI	GGWCC	1 cut(s)	384
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	738
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.