Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Reverse (-)

63672312 .. 63674449

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCGCTCTGCAACTTCCTCCATCTCCGATGGAGCAAAATTCCGGCACTTCCCCTGGTGCTGCAGCTATCGAGCACGGTCCAGGCCGTCTCTCCCTTTTATCTGTTCTTCTCCAAGAAGTCGAGGTCCTCGACCTGTGTTGAAGCGAGGCTGTTCATTCCTCCTCAGATTGGTTCGATCCGGGCTTTGAGGTCGCCTTCAGTTCGTCATCCCCTTGGATTAGGGGCTGTTGGTGACTGGCAAGTTTGGGATCTAGGGATCCTGAAGGCATCTTGTCTTCCAGTATGTCTCAAACTACCAGTGGCGCAGGTAGATTTGGTGAGATTATGGTGTTTGTGCTTGGAGAAGAGGTCATTTTTCCAGTCCAGTCAGACTCTGCTTAACTCCCTTGGAGGGCAAGATTCGAAGCCGGGAAGATGCAGAAAGGTAGATGGTGGGCTACCGGTCTGTGGGTCAGCTTTGATAGGAGCCATCGTTGTCGGGGCTGGTTCGATCGTGGTTGGTGTTAGGCTTAGGAGTCGGTTTTCGATCCGGCCTTCCAGGGCGCTGAAGAGGCAATGGAAGCGGTGCCTGGGCGACATTTGTACTGCGATCAGTATTGGCATTGGTGGCGGCGGGTGTTGTCGGGTTGATGGGGCCGAGAGGTTCTTTCTCAGACGAAGGGCGGTGGAGCGGTGGTCGAACCCGAGATGCTCTCGTCTTTTGCCTGAATTGAACTCAAGGGGAAGGAATCCAATAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.12

Weight (kDa)

10.82

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	567
AccBSI	CCGCTC	2 cut(s)	7, 673
AciI	CCGC	6 cut(s)	5, 565, 612, 615, 665, 673
AclWI	GGATC	5 cut(s)	172, 253, 258, 266, 523
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	3 cut(s)	183, 284, 569
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	3 cut(s)	170, 393, 449
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	2 cut(s)	143, 715
AjnI	CCWGG	4 cut(s)	54, 81, 539, 570
AluBI	AGCT	2 cut(s)	67, 458
AluI	AGCT	2 cut(s)	67, 458
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	94, 293
AlwI	GGATC	5 cut(s)	172, 253, 258, 266, 523
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	685
AoxI	GGCC	3 cut(s)	84, 533, 636
ApeKI	GCWGC	2 cut(s)	61, 64
ApoI	RAATTY	1 cut(s)	39
AsiGI	ACCGGT	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	307, 547
AspS9I	GGNCC	3 cut(s)	79, 126, 636
AsuC2I	CCSGG	2 cut(s)	182, 411
AsuHPI	GGTGA	2 cut(s)	245, 331
AsuII	TTCGAA	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	2 cut(s)	79, 126
BamHI	GGATCC	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	48, 76
BccI	CCATC	5 cut(s)	24, 30, 425, 479, 626
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	4 cut(s)	56, 83, 541, 572
BcnI	CCSGG	2 cut(s)	182, 411
BcoDI	GTCTC	2 cut(s)	94, 293
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	5, 62, 65, 613
BlsI	GCNGC	4 cut(s)	6, 63, 66, 614
Bme1390I	CCNGG	6 cut(s)	56, 83, 182, 411, 541, 572
Bme18I	GGWCC	2 cut(s)	79, 126
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	3 cut(s)	79, 126, 636
BmiI	GGNNCC	4 cut(s)	260, 469, 569, 637
BmrFI	CCNGG	6 cut(s)	56, 83, 182, 411, 541, 572
BmsI	GCATC	3 cut(s)	278, 407, 680
BpiI	GAAGAC	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	679, 711
Bpu10I	CCTNAGC	1 cut(s)	512
Bpu14I	TTCGAA	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	2 cut(s)	182, 411
BsaJI	CCNNGG	5 cut(s)	54, 214, 388, 540, 571
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	6 cut(s)	335, 365, 459, 489, 662, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 393, 449
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	5 cut(s)	242, 281, 299, 361, 366
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	4 cut(s)	56, 83, 541, 572
BseDI	CCNNGG	5 cut(s)	54, 214, 388, 540, 571
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	3 cut(s)	170, 393, 449
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	179, 667
BseNI	ACTGG	5 cut(s)	242, 281, 299, 361, 366
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	48, 76
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	3 cut(s)	86, 535, 638
BshNI	GGYRCC	1 cut(s)	567
BshTI	ACCGGT	1 cut(s)	442
BsiEI	CGRYCG	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	5 cut(s)	44, 181, 410, 443, 532
BslI	CCNNNNNNNGG	3 cut(s)	170, 393, 449
BsmAI	GTCTC	2 cut(s)	94, 293
BsmBI	CGTCTC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	86, 535, 638
BsoBI	CYCGRG	1 cut(s)	685
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	6 cut(s)	177, 250, 258, 492, 528, 591
BspACI	CCGC	6 cut(s)	5, 565, 612, 615, 665, 673
BspANI	GGCC	3 cut(s)	86, 535, 638
BspCNI	CTCAG	2 cut(s)	178, 666
BspLI	GGNNCC	4 cut(s)	260, 469, 569, 637
BspMAI	CTGCAG	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	5 cut(s)	172, 253, 258, 266, 523
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	567
BsrBI	CCGCTC	2 cut(s)	7, 673
BsrDI	GCAATG	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	442
BsrI	ACTGG	5 cut(s)	242, 281, 299, 361, 366
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	5 cut(s)	54, 214, 388, 540, 571
BssMI	GATC	6 cut(s)	177, 250, 258, 492, 528, 591
BssT1I	CCWWGG	2 cut(s)	214, 388
Bst2UI	CCWGG	4 cut(s)	56, 83, 541, 572
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	2 cut(s)	341, 545
BstBI	TTCGAA	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	165, 512, 653
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	2 cut(s)	307, 547
BstKTI	GATC	6 cut(s)	180, 253, 261, 495, 531, 594
BstMAI	GTCTC	2 cut(s)	94, 293
BstMBI	GATC	6 cut(s)	177, 250, 258, 492, 528, 591
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	3 cut(s)	553, 562, 609
BstNI	CCWGG	4 cut(s)	56, 83, 541, 572
BstSCI	CCNGG	6 cut(s)	54, 81, 180, 409, 539, 570
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	48, 76
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	2 cut(s)	250, 258
BstYI	RGATCY	2 cut(s)	250, 258
BsuRI	GGCC	3 cut(s)	86, 535, 638
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	298
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	2 cut(s)	307, 547
Cfr10I	RCCGGY	1 cut(s)	442
Cfr13I	GGNCC	3 cut(s)	79, 126, 636
Csp6I	GTAC	1 cut(s)	585
CspAI	ACCGGT	1 cut(s)	442
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	3 cut(s)	165, 512, 653
DpnI	GATC	6 cut(s)	179, 252, 260, 494, 530, 593
DpnII	GATC	6 cut(s)	177, 250, 258, 492, 528, 591
Eam1104I	CTCTTC	2 cut(s)	341, 545
EarI	CTCTTC	2 cut(s)	341, 545
Eco130I	CCWWGG	2 cut(s)	214, 388
Eco47I	GGWCC	2 cut(s)	79, 126
Eco57I	CTGAAG	3 cut(s)	183, 284, 569
Eco88I	CYCGRG	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRII	CCWGG	4 cut(s)	54, 81, 539, 570
EcoT14I	CCWWGG	2 cut(s)	214, 388
ErhI	CCWWGG	2 cut(s)	214, 388
Esp3I	CGTCTC	1 cut(s)	94
FaiI	YATR	2 cut(s)	286, 328
FauI	CCCGC	1 cut(s)	608
Fnu4HI	GCNGC	4 cut(s)	5, 62, 65, 613
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	4 cut(s)	5, 62, 65, 613
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	2 cut(s)	306, 546
GluI	GCNGC	4 cut(s)	5, 62, 65, 613
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	3 cut(s)	86, 535, 638
HapII	CCGG	5 cut(s)	44, 181, 410, 443, 532
HhaI	GCGC	2 cut(s)	307, 547
Hin6I	GCGC	2 cut(s)	305, 545
HinP1I	GCGC	2 cut(s)	305, 545
HinfI	GANTC	4 cut(s)	373, 401, 517, 730
HpaII	CCGG	5 cut(s)	44, 181, 410, 443, 532
HphI	GGTGA	2 cut(s)	245, 331
Hpy188I	TCNGA	4 cut(s)	29, 168, 372, 656
Hpy188III	TCNNGA	1 cut(s)	262
HpyAV	CCTTC	5 cut(s)	207, 259, 546, 654, 720
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	12, 64, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	553, 562, 609
HpyF3I	CTNAG	3 cut(s)	165, 512, 653
HspAI	GCGC	2 cut(s)	305, 545
Kzo9I	GATC	6 cut(s)	177, 250, 258, 492, 528, 591
LmnI	GCTCC	3 cut(s)	33, 467, 670
Lsp1109I	GCAGC	2 cut(s)	48, 76
LweI	GCATC	3 cut(s)	278, 407, 680
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	6 cut(s)	179, 252, 260, 494, 530, 593
MbiI	CCGCTC	2 cut(s)	7, 673
MboI	GATC	6 cut(s)	177, 250, 258, 492, 528, 591
MboII	GAAGA	5 cut(s)	100, 269, 358, 426, 562
MflI	RGATCY	2 cut(s)	250, 258
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	2 cut(s)	39, 710
MlyI	GAGTC	2 cut(s)	367, 526
MseI	TTAA	1 cut(s)	381
MspI	CCGG	5 cut(s)	44, 181, 410, 443, 532
MspR9I	CCNGG	6 cut(s)	56, 83, 182, 411, 541, 572
MvaI	CCWGG	4 cut(s)	56, 83, 541, 572
MwoI	GCNNNNNNNGC	3 cut(s)	553, 562, 609
NciI	CCSGG	2 cut(s)	182, 411
NdeII	GATC	6 cut(s)	177, 250, 258, 492, 528, 591
NlaIV	GGNNCC	4 cut(s)	260, 469, 569, 637
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	401, 730
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	4 cut(s)	6, 63, 66, 614
Ple19I	CGATCG	1 cut(s)	495
PleI	GAGTC	2 cut(s)	367, 525
PpsI	GAGTC	2 cut(s)	367, 525
PpuMI	RGGWCCY	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	4 cut(s)	54, 81, 539, 570
PspGI	CCWGG	4 cut(s)	54, 81, 539, 570
PspN4I	GGNNCC	4 cut(s)	260, 469, 569, 637
PspPI	GGNCC	3 cut(s)	79, 126, 636
PspPPI	RGGWCCY	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	250, 258
PvuI	CGATCG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	4 cut(s)	5, 62, 65, 613
Sau3AI	GATC	6 cut(s)	177, 250, 258, 492, 528, 591
Sau96I	GGNCC	3 cut(s)	79, 126, 636
SchI	GAGTC	2 cut(s)	367, 526
ScrFI	CCNGG	6 cut(s)	56, 83, 182, 411, 541, 572
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	9 cut(s)	69, 128, 137, 194, 312, 353, 429, 460, 647
SfaNI	GCATC	3 cut(s)	278, 407, 680
SfcI	CTRYAG	1 cut(s)	62
SfuI	TTCGAA	1 cut(s)	404
SinI	GGWCC	2 cut(s)	79, 126
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
Sse9I	AATT	2 cut(s)	39, 710
SsiI	CCGC	6 cut(s)	5, 565, 612, 615, 665, 673
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	6 cut(s)	54, 81, 180, 409, 539, 570
StyI	CCWWGG	2 cut(s)	214, 388
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	8 cut(s)	71, 122, 131, 176, 404, 491, 527, 680
TasI	AATT	2 cut(s)	39, 710
TatI	WGTACW	1 cut(s)	584
TauI	GCSGC	2 cut(s)	7, 615
TfiI	GAWTC	2 cut(s)	401, 730
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	61, 64
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	2 cut(s)	79, 126
XapI	RAATTY	1 cut(s)	39
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.