Rmu_sc0007205.1_g000015

transposition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007205.1
OG0008181
Physical Location & Seq
Reverse (-)
73635 .. 76369
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007205.1_g000015.1.cds

Sequence Viewer

Length: 876 bp
atgcttgctagcatgacggggatgatggatggacgatggaatggtcagcacttgattggagcggcgggcacgccaacggggattaggagagggggggatgctcgccgaaaactggagctgagatcagggaggaggaaaagaaggccgaagagcagagaggagggagaggaagaagagtctccggtgcctttggatcttcaatttcaactaagtttgttctttctccttgtttcgttttcgtctctgacttcgattgttgatttagaggctgcacttcacattcgaagctatggttttgctcatgagatgtggtctaatcttcgtctcaagtttgctgctccaaataggcaaaacatattgcagcttaaatccactcttcaaggccttaagaaagggtcagacaatatagagacttacttggacaagatcaaggctgttagagatgcccttgagactgtgggtgtgtttcttgatgatgaagatattgtggttactctcttgagggctgctgaagtgcacattgagaatgagtctcagcctgttactcttactgctatggttgcacaatcatccaccactcccaccactcttttaacaccaaccactcccatttccacaccatctgtttctcctacagtacctactatacctcctggcttcaatcctcttgcttcacctcctaccagcactattccatctcccatatcacaactcacttatgttcccatccctgctgtcccctatgggtattctccattcactgctttcctcatgcatgactctacacttgggatgaccagcttctatgctggtagaggcaggggagacttggtggacctgatcgaggccctcacactgttggtagaggctttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HTH_21 rve

Protein Analysis

291

Amino Acids

31.76

Weight (kDa)

5.99

Isoelectric Point (pI)

65.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 2 cut(s) 62, 65
AclWI GGATC 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 1 cut(s) 639
AfiI CCNNNNNNNGG 2 cut(s) 112, 844
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 4 cut(s) 200, 206, 380, 661
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 4 cut(s) 118, 288, 364, 801
AluI AGCT 4 cut(s) 118, 288, 364, 801
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 7 cut(s) 183, 246, 329, 404, 446, 537, 819
Alw44I GTGCAC 1 cut(s) 515
AlwI GGATC 1 cut(s) 201
AoxI GGCC 3 cut(s) 143, 382, 846
ApaLI GTGCAC 1 cut(s) 515
ApeKI GCWGC 4 cut(s) 269, 335, 361, 506
AspS9I GGNCC 2 cut(s) 835, 847
AsuHPI GGTGA 1 cut(s) 666
AsuII TTCGAA 1 cut(s) 283
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 835
BaeGI GKGCMC 2 cut(s) 71, 519
BanI GGYRCC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 4 cut(s) 256, 322, 373, 493
BccI CCATC 6 cut(s) 19, 23, 30, 628, 703, 734
BciT130I CCWGG 1 cut(s) 654
BcoDI GTCTC 7 cut(s) 183, 246, 329, 404, 446, 537, 819
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 633
BfrI CTTAAG 1 cut(s) 386
BisI GCNGC 5 cut(s) 63, 270, 336, 362, 507
BlsI GCNGC 5 cut(s) 64, 271, 337, 363, 508
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 835
BmgT120I GGNCC 2 cut(s) 835, 847
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 2 cut(s) 88, 433
BmtI GCTAGC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 283
BpuEI CTTGAG 3 cut(s) 311, 470, 520
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 4 cut(s) 634, 664, 816, 846
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 844
Bse1I ACTGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 654
BseGI GGATG 6 cut(s) 27, 34, 103, 569, 726, 798
BseLI CCNNNNNNNGG 2 cut(s) 112, 844
BseMII CTCAG 2 cut(s) 110, 548
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 2 cut(s) 145, 173
BseSI GKGCMC 2 cut(s) 71, 519
BseXI GCAGC 4 cut(s) 256, 322, 373, 493
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 3 cut(s) 145, 384, 848
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 2 cut(s) 112, 844
BsmAI GTCTC 7 cut(s) 183, 246, 329, 404, 446, 537, 819
BsmBI CGTCTC 2 cut(s) 246, 329
BsmFI GGGAC 1 cut(s) 722
BsnI GGCC 3 cut(s) 145, 384, 848
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 71, 519
Bsp143I GATC 4 cut(s) 122, 193, 426, 840
BspACI CCGC 2 cut(s) 62, 65
BspANI GGCC 3 cut(s) 145, 384, 848
BspCNI CTCAG 2 cut(s) 111, 547
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 186
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 201
BspQI GCTCTTC 1 cut(s) 143
BspT104I TTCGAA 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 184
BspTI CTTAAG 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 117
BssMI GATC 4 cut(s) 122, 193, 426, 840
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 3 cut(s) 457, 637, 858
Bst6I CTCTTC 3 cut(s) 143, 168, 381
BstAFI CTTAAG 1 cut(s) 386
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 5 cut(s) 6, 10, 67, 71, 103
BstDEI CTNAG 3 cut(s) 119, 209, 534
BstENI CCTNNNNNAGG 1 cut(s) 842
BstF5I GGATG 6 cut(s) 27, 34, 103, 569, 726, 798
BstKTI GATC 4 cut(s) 125, 196, 429, 843
BstMAI GTCTC 7 cut(s) 183, 246, 329, 404, 446, 537, 819
BstMBI GATC 4 cut(s) 122, 193, 426, 840
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 2 cut(s) 71, 519
BstV1I GCAGC 4 cut(s) 256, 322, 373, 493
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 3 cut(s) 145, 384, 848
BtsCI GGATG 6 cut(s) 27, 34, 103, 569, 726, 798
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 2 cut(s) 759, 854
Cac8I GCNNGC 5 cut(s) 6, 10, 67, 71, 103
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 835, 847
Csp6I GTAC 1 cut(s) 638
CviAII CATG 4 cut(s) 13, 302, 772, 776
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 3 cut(s) 119, 209, 534
DpnI GATC 4 cut(s) 124, 195, 428, 842
DpnII GATC 4 cut(s) 122, 193, 426, 840
Eam1104I CTCTTC 3 cut(s) 143, 168, 381
EarI CTCTTC 3 cut(s) 143, 168, 381
Eco147I AGGCCT 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 842
EcoO109I RGGNCCY 1 cut(s) 847
EcoRII CCWGG 1 cut(s) 652
EcoT22I ATGCAT 1 cut(s) 777
Esp3I CGTCTC 2 cut(s) 246, 329
FaeI CATG 4 cut(s) 16, 305, 775, 779
FaqI GGGAC 1 cut(s) 722
FatI CATG 4 cut(s) 12, 301, 771, 775
FauI CCCGC 1 cut(s) 58
Fnu4HI GCNGC 5 cut(s) 63, 270, 336, 362, 507
FokI GGATG 6 cut(s) 34, 41, 110, 556, 713, 805
Fsp4HI GCNGC 5 cut(s) 63, 270, 336, 362, 507
FspBI CTAG 1 cut(s) 9
GluI GCNGC 5 cut(s) 63, 270, 336, 362, 507
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 3 cut(s) 145, 384, 848
HapII CCGG 1 cut(s) 182
Hin1II CATG 4 cut(s) 16, 305, 775, 779
HinfI GANTC 3 cut(s) 176, 530, 779
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 666
Hpy166II GTNNAC 2 cut(s) 517, 835
Hpy188I TCNGA 2 cut(s) 246, 400
Hpy188III TCNNGA 3 cut(s) 302, 470, 499
Hpy8I GTNNAC 2 cut(s) 517, 835
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 3 cut(s) 457, 637, 858
HpyCH4V TGCA 5 cut(s) 272, 361, 517, 563, 775
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 3 cut(s) 119, 209, 534
Hsp92II CATG 4 cut(s) 16, 305, 775, 779
Kzo9I GATC 4 cut(s) 122, 193, 426, 840
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 3 cut(s) 59, 115, 343
Lsp1109I GCAGC 4 cut(s) 256, 322, 373, 493
LweI GCATC 2 cut(s) 88, 433
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 490, 541
MalI GATC 4 cut(s) 124, 195, 428, 842
MbiI CCGCTC 1 cut(s) 62
MboI GATC 4 cut(s) 122, 193, 426, 840
MboII GAAGA 7 cut(s) 160, 182, 185, 188, 311, 368, 491
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 71, 519
MluCI AATT 1 cut(s) 200
MlyI GAGTC 3 cut(s) 185, 539, 773
Mph1103I ATGCAT 1 cut(s) 777
MseI TTAA 3 cut(s) 366, 387, 593
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 560
NdeII GATC 4 cut(s) 122, 193, 426, 840
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 4 cut(s) 16, 305, 775, 779
NlaIV GGNNCC 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 777
NspV TTCGAA 1 cut(s) 283
PagI TCATGA 1 cut(s) 301
PceI AGGCCT 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 143
PkrI GCNGC 5 cut(s) 64, 271, 337, 363, 508
PleI GAGTC 3 cut(s) 184, 538, 773
PpsI GAGTC 3 cut(s) 184, 538, 773
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 2 cut(s) 835, 847
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 366, 387, 593
SatI GCNGC 5 cut(s) 63, 270, 336, 362, 507
Sau3AI GATC 4 cut(s) 122, 193, 426, 840
Sau96I GGNCC 2 cut(s) 835, 847
SchI GAGTC 3 cut(s) 185, 539, 773
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 2 cut(s) 71, 519
SetI ASST 8 cut(s) 120, 290, 366, 643, 652, 679, 803, 840
SfaNI GCATC 2 cut(s) 88, 433
SfcI CTRYAG 1 cut(s) 633
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 1 cut(s) 835
SmlI CTYRAG 4 cut(s) 326, 386, 449, 499
SmoI CTYRAG 4 cut(s) 326, 386, 449, 499
Sse9I AATT 1 cut(s) 200
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 2 cut(s) 62, 65
SspMI CTAG 1 cut(s) 9
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 652
TaaI ACNGT 3 cut(s) 457, 637, 858
TaqI TCGA 3 cut(s) 251, 283, 843
TasI AATT 1 cut(s) 200
TauI GCSGC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 366, 387, 593
Tru9I TTAA 3 cut(s) 366, 387, 593
TscAI CASTG 2 cut(s) 766, 861
TseI GCWGC 4 cut(s) 269, 335, 361, 506
TspDTI ATGAA 1 cut(s) 492
TspRI CASTG 2 cut(s) 766, 861
Vha464I CTTAAG 1 cut(s) 386
VneI GTGCAC 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 835
XagI CCTNNNNNAGG 1 cut(s) 842
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.